Opened 7 years ago

Closed 7 years ago

Last modified 7 years ago

#1864 closed defect (fixed)

BLAST results show parameter settings different from blast command used to get them

Reported by: Elaine Meng Owned by: Conrad Huang
Priority: moderate Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Probably doesn't matter which structure, but I had 2ahj open and used command:

blastprotein /A database pdb cutoff 1e-5 matrix BLOSUM62 max_hits 10 tool_id 25

but then the dialog came back filled in with the default settings for cutoff (1e-5) and # hits 100. Shouldn't it show the settings that were used in the command? It made it unclear as to what had been used, since I got 61 hits. Couldn't tell about the cutoff since the last hit was still way below that value.

Change History (3)

comment:1 by Conrad Huang, 7 years ago

Resolution: fixed
Status: assignedclosed

Fixed in 7ae130f8.

The BLAST search parameters are now displayed above the hits table. This way, there is no confusion as to what the BLAST results correspond to, even if the user changes parameter settings in the UI.

in reply to:  2 ; comment:2 by Elaine Meng, 7 years ago

Thanks, that helps!  However, a related bugette is that this information is no longer shown in the Blast Protein window if i save session, close session, and restore session.  

comment:3 by Conrad Huang, 7 years ago

Whoops. Forgot to save the parameters when the blast job returned. Fixed in 9b034fd69. Also hooked up help.

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