Opened 7 years ago
Closed 7 years ago
#1848 closed defect (not a bug)
Clipper not a supported wheel on this platform
Reported by: | Owned by: | Conrad Huang | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Tool Shed | Version: | |
Keywords: | Cc: | Tristan Croll | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-4.15.0-46-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.8 (2018-11-28) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/info.py", line 414, in initialize api._api_caller.initialize(api, session, self) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 1198, in initialize return cls._get_func(api, "initialize")(session, bi) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/__init__.py", line 41, in initialize nag(session) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py", line 28, in nag if not check_registration(logger=session.logger): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py", line 49, in check_registration return _check_expiration(param, logger) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/registration/nag.py", line 131, in _check_expiration expires = datetime.strptime(param["Expires"], TimeFormat) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py", line 565, in _strptime_datetime tt, fraction = _strptime(data_string, format) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py", line 362, in _strptime (data_string, format)) ValueError: time data 'Tue Apr 14 12:06:50 2020' does not match format '%a %b %d %H:%M:%S %Y' note | Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 338, in __init__ self.init_available_from_cache(logger) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 445, in init_available_from_cache abc.load_from_cache() File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache b = _build_bundle(d) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-11-28) How to cite UCSF ChimeraX > toolshed show "Remote Control" xmlrpc server running at 127.0.0.1 on port 42184 > open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.cif 5dae.cif title: Kazal type inhibitor from salivary glands of Aedes aegypti mosquito [more info...] Chain information for 5dae.cif #1 --- Chain | Description A B | AAEL006007-Pa 5dae.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > style selAtoms stick Changed 927 atom styles > hide selAtoms ribbons > style selAtoms stick Changed 927 atom styles > show selAtoms > toolshed show "Volume Viewer" > open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.pdb 5dae.pdb title: Kazal type inhibitor from salivary glands of aedes aegypti mosquito [more info...] Chain information for 5dae.pdb #2 --- Chain | Description A B | kazal domain-containing peptide > show selAtoms surfaces > hide #!2.1 models > hide #!2.2 models > hide #!2 models > show #!2 models > hide #!1.2 models > hide #!1.1 models > show #!2.1 models > show #!2.2 models > hide #!2.2 models > hide #!2.1 models > hide #!2 models > show #!1.1 models > hide #!1.1 models > show #!1 models > hide #!1 models > show #!1 models > show #!1.1 models > show #!1.2 models > hide #1.2 target m > hide #1.1 target m > close #1.1 > close #1.2 > close #2.1 > close #2.2 > show #!2 models > hide #!2 models > show #!2 models > select #1/A 473 atoms, 439 bonds selected > ~select #2 473 atoms, 439 bonds selected > select #1 927 atoms, 850 bonds selected > select #2 927 atoms, 850 bonds selected > ~select #1 927 atoms, 850 bonds selected > select #1 927 atoms, 850 bonds selected > select #2 927 atoms, 850 bonds selected > close #2 > view cofr false > view orient cofr false > toolshed show "Cage Builder" Downloading bundle ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl unloading module chimerax.clipper Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/ui/widgets/htmlview.py", line 362, in download_finished session=self.session) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 548, in install_bundle results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 842, in _pip_install results = self._run_pip(command) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 869, in _run_pip raise RuntimeError(s) RuntimeError: ERROR: Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 338, in __init__ self.init_available_from_cache(logger) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 445, in init_available_from_cache abc.load_from_cache() File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache b = _build_bundle(d) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on this platform. You are using pip version 18.1, however version 19.0.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. RuntimeError: ERROR: Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 338, in __init__ self.init_available_from_cache(logger) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 445, in init_available_from_cache abc.load_from_cache() File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache b = _build_bundle(d) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on this platform. You are using pip version 18.1, however version 19.0.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py", line 869, in _run_pip raise RuntimeError(s) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
Cc: | added |
---|---|
Component: | Unassigned → Tool Shed |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Clipper not a supported wheel on this platform |
comment:2 by , 7 years ago
Resolution: | → not a bug |
---|---|
Status: | assigned → closed |
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This is just simple user error. The only people who have access to that wheel right now received the link as part of an email containing clear instructions to use the ChimeraX *daily build*. It’s probably someone attending the workshop I’m at now.