Opened 7 years ago
Closed 7 years ago
#1848 closed defect (not a bug)
Clipper not a supported wheel on this platform
| Reported by: | Owned by: | Conrad Huang | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Tool Shed | Version: | |
| Keywords: | Cc: | Tristan Croll | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-4.15.0-46-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.8 (2018-11-28)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
warning | Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/info.py", line 414, in initialize
api._api_caller.initialize(api, session, self)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 1198, in initialize
return cls._get_func(api, "initialize")(session, bi)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/__init__.py", line 41, in initialize
nag(session)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/nag.py", line 28, in nag
if not check_registration(logger=session.logger):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/nag.py", line 49, in check_registration
return _check_expiration(param, logger)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/registration/nag.py", line 131, in _check_expiration
expires = datetime.strptime(param["Expires"], TimeFormat)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py", line 565, in
_strptime_datetime
tt, fraction = _strptime(data_string, format)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/_strptime.py", line 362, in
_strptime
(data_string, format))
ValueError: time data 'Tue Apr 14 12:06:50 2020' does not match format '%a %b
%d %H:%M:%S %Y'
note | Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
UCSF ChimeraX version: 0.8 (2018-11-28)
How to cite UCSF ChimeraX
> toolshed show "Remote Control"
xmlrpc server running at 127.0.0.1 on port 42184
> open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.cif
5dae.cif title:
Kazal type inhibitor from salivary glands of Aedes aegypti mosquito [more
info...]
Chain information for 5dae.cif #1
---
Chain | Description
A B | AAEL006007-Pa
5dae.cif mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> style selAtoms stick
Changed 927 atom styles
> hide selAtoms ribbons
> style selAtoms stick
Changed 927 atom styles
> show selAtoms
> toolshed show "Volume Viewer"
> open /home/ricardo/tilipo33_publicação/dock_files/yasara/5dae.pdb
5dae.pdb title:
Kazal type inhibitor from salivary glands of aedes aegypti mosquito [more
info...]
Chain information for 5dae.pdb #2
---
Chain | Description
A B | kazal domain-containing peptide
> show selAtoms surfaces
> hide #!2.1 models
> hide #!2.2 models
> hide #!2 models
> show #!2 models
> hide #!1.2 models
> hide #!1.1 models
> show #!2.1 models
> show #!2.2 models
> hide #!2.2 models
> hide #!2.1 models
> hide #!2 models
> show #!1.1 models
> hide #!1.1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!1.1 models
> show #!1.2 models
> hide #1.2 target m
> hide #1.1 target m
> close #1.1
> close #1.2
> close #2.1
> close #2.2
> show #!2 models
> hide #!2 models
> show #!2 models
> select #1/A
473 atoms, 439 bonds selected
> ~select #2
473 atoms, 439 bonds selected
> select #1
927 atoms, 850 bonds selected
> select #2
927 atoms, 850 bonds selected
> ~select #1
927 atoms, 850 bonds selected
> select #1
927 atoms, 850 bonds selected
> select #2
927 atoms, 850 bonds selected
> close #2
> view cofr false
> view orient cofr false
> toolshed show "Cage Builder"
Downloading bundle ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl
unloading module chimerax.clipper
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/ui/widgets/htmlview.py", line 362, in download_finished
session=self.session)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 548, in install_bundle
results = self._pip_install(bundle, per_user=per_user, reinstall=reinstall)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 842, in _pip_install
results = self._run_pip(command)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 869, in _run_pip
raise RuntimeError(s)
RuntimeError: ERROR:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on
this platform.
You are using pip version 18.1, however version 19.0.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
RuntimeError: ERROR:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
ChimeraX_Clipper-0.4.0-cp37-cp37m-linux_x86_64.whl is not a supported wheel on
this platform.
You are using pip version 18.1, however version 19.0.3 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
File "/usr/lib/ucsf-chimerax-daily/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 869, in _run_pip
raise RuntimeError(s)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 384.130
OpenGL renderer: Quadro K4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 7 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Tool Shed |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Clipper not a supported wheel on this platform |
comment:2 by , 7 years ago
| Resolution: | → not a bug |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
This is just simple user error. The only people who have access to that wheel right now received the link as part of an email containing clear instructions to use the ChimeraX *daily build*. It’s probably someone attending the workshop I’m at now.