Attempt to open Chimera 1 session

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Darwin-15.3.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-02-21)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.9 (2019-02-21)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/jliu/Downloads/P22-ChimeraX/cover-chimerax-docking.cxs format
session

File not found: /Users/jliu/Downloads/P22-ChimeraX/cover-chimerax-docking.cxs  

File not found: /Users/jliu/Downloads/P22-ChimeraX/cover-chimerax-docking.cxs  

> open /Users/jliu/Documents/cover/cover-1.py

Traceback (most recent call last):  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 549, in _qt_safe  
run(session, "open " + quote_if_necessary(paths[0]))  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/run.py", line 31, in run  
results = command.run(text, log=log)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2617, in run  
result = ci.function(session, **kw_args)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 41, in open  
from_database=from_database, ignore_cache=ignore_cache, **kw))  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 117, in open  
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 62, in handle_unknown_kw  
return f(*args, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/models.py", line 601, in open  
session, filenames, format=format, name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py", line 467, in open_multiple_data  
models, status = open_data(session, fspec, format=format, name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py", line 421, in open_data  
models, status = open_func(*args, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 75, in open_python_script  
exec(code, sandbox.__dict__)  
File "cover-1.py", line 1, in <module>  
ModuleNotFoundError: No module named 'cPickle'  
  
ModuleNotFoundError: No module named 'cPickle'  
  
File "cover-1.py", line 1, in  
  
See log for complete Python traceback.  
  

> open /Users/jliu/Documents/cover/cover-new.py

Traceback (most recent call last):  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 549, in _qt_safe  
run(session, "open " + quote_if_necessary(paths[0]))  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/run.py", line 31, in run  
results = command.run(text, log=log)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2617, in run  
result = ci.function(session, **kw_args)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 41, in open  
from_database=from_database, ignore_cache=ignore_cache, **kw))  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 117, in open  
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 62, in handle_unknown_kw  
return f(*args, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/models.py", line 601, in open  
session, filenames, format=format, name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py", line 467, in open_multiple_data  
models, status = open_data(session, fspec, format=format, name=name, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/io.py", line 421, in open_data  
models, status = open_func(*args, **kw)  
File
"/Volumes/ChimeraXInstaller/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 75, in open_python_script  
exec(code, sandbox.__dict__)  
File "cover-new.py", line 1, in <module>  
ModuleNotFoundError: No module named 'cPickle'  
  
ModuleNotFoundError: No module named 'cPickle'  
  
File "cover-new.py", line 1, in  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-10.12.13
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.