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Apr 14, 2025:

11:55 PM Ticket #17379 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:35 PM Ticket #17378 (Restore coloring on non-existent surface: bad error message) created by chimerax-bug-report@…: […]
7:14 PM Ticket #17365 (Crash saving OBJ) closed by Tom Goddard: can't reproduce: This ChimeraX crash was in the Qt window toolkit event loop. The last …
7:11 PM Ticket #17359 (volume onesmask: 'NoneType' object has no attribute 'size') closed by Tom Goddard: fixed: Fixed. Made the volume onesmask give a clear error message if no …
2:01 PM Ticket #17377 (Crash at exit) created by chimerax-bug-report@…: […]
1:34 PM Ticket #17376 (Crash at exit) created by chimerax-bug-report@…: […]
1:28 PM Ticket #17375 (Crash moving window between screens) created by chimerax-bug-report@…: […]
11:49 AM Ticket #17374 (Keystroke forwarding to dead tool) closed by Eric Pettersen: duplicate
11:48 AM Ticket #17373 (Keystroke forwarding to dead tool) closed by Eric Pettersen: duplicate
11:47 AM Ticket #17372 (Keystroke forwarding to dead tool) closed by Eric Pettersen: can't reproduce: The code has changed significantly since the 1.1 release being used here.
11:32 AM Ticket #17370 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:31 AM Ticket #17369 (Crash in garbage collection) closed by Eric Pettersen: duplicate
11:18 AM Ticket #17368 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:17 AM Ticket #17367 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Eric Pettersen: can't reproduce: Probable remote display issue
10:54 AM Ticket #17364 (Crash closing dock widget) closed by Eric Pettersen: can't reproduce
10:52 AM Ticket #17363 (Restore session: empty log) closed by Eric Pettersen: duplicate: Hi Kexin, Thanks for reporting this problem. It was fixed in October …
10:42 AM Ticket #17362 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:38 AM Ticket #17360 (MOLE JSON: atom radius must be positive) closed by Eric Pettersen: duplicate: Duplicate of #9745
10:29 AM Ticket #17358 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:27 AM Ticket #17356 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
9:55 AM Ticket #17374 (Keystroke forwarding to dead tool) created by chimerax-bug-report@…: […]
9:55 AM Ticket #17373 (Keystroke forwarding to dead tool) created by chimerax-bug-report@…: […]
9:55 AM Ticket #17372 (Keystroke forwarding to dead tool) created by chimerax-bug-report@…: […]
9:52 AM Ticket #17371 (Crash in ExtractMolecule::connect_residue_by_template) created by chimerax-bug-report@…: […] 0.cif
7:35 AM Ticket #17370 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
4:35 AM Ticket #17369 (Crash in garbage collection) created by chimerax-bug-report@…: […]
4:21 AM Ticket #17368 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:40 AM Ticket #17367 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…: […]
12:29 AM Ticket #17366 (ChimeraX1.9 problem) created by Witse.DeCleene@…: […]

Apr 13, 2025:

10:07 AM Ticket #17365 (Crash saving OBJ) created by nuclearjuicer@…: […]
3:01 AM Ticket #17364 (Crash closing dock widget) created by chimerax-bug-report@…: […]

Apr 12, 2025:

6:10 PM Ticket #17363 (Restore session: empty log) created by liukx23@…: […]
12:45 PM Ticket #17362 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 11, 2025:

8:53 AM Ticket #17361 (Crash creating HTML profile using remote display and XDG_SESSION_TYPE tty) created by chimerax-bug-report@…: […]
8:24 AM Ticket #17360 (MOLE JSON: atom radius must be positive) created by chimerax-bug-report@…: […]
7:13 AM Ticket #17359 (volume onesmask: 'NoneType' object has no attribute 'size') created by mai.nguyen@…: […]
2:47 AM Ticket #17358 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Apr 10, 2025:

8:51 PM Ticket #17348 (SAXParseException reading markers) closed by Tom Goddard: fixed: Fixed. Made writing a marker set file (.cmm) when no marker models …
8:34 PM Ticket #17355 (Crash in event loop closing a QDockWidget, probably an AlphaFold PAE plot) closed by Tom Goddard: can't reproduce
8:23 PM Ticket #17340 (Crash moving window between screens) closed by Tom Goddard: duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit used …
7:36 PM Training edited by Tom Goddard: (diff)
7:32 PM Training edited by Tom Goddard: Added Andrii Kyrylchuk VR demo. (diff)
7:28 PM Training edited by Tom Goddard: Added BAYS high school intern demo. (diff)
7:24 PM Training edited by Tom Goddard: (diff)
7:18 PM Training edited by Tom Goddard: Added Sandler cryoEM VR demo. (diff)
7:12 PM Training edited by Tom Goddard: (diff)
7:02 PM Training edited by Tom Goddard: (diff)
6:56 PM Training edited by Tom Goddard: Added biophysics student vr demo. (diff)
6:49 PM Training edited by Tom Goddard: (diff)
4:23 PM Ticket #9256 (saving NMR ensemble pdb with [NAME] only saves last structure) closed by Eric Pettersen: fixed: Fix: …
3:08 PM Ticket #17357 (pip install failure ("invalid requirement")) created by Eric Pettersen: Using the attached wheel, "toolshed install" works fine to install it …
2:57 PM Ticket #17356 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
2:15 PM Ticket #17354 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:09 PM Ticket #17353 (Crash destroying OpenGL context at exit) closed by Eric Pettersen: duplicate
2:06 PM Ticket #17352 (Crash destroying OpenGL context at exit) closed by Eric Pettersen: duplicate
2:03 PM Ticket #17351 (Crash in graphics driver rendering widget) closed by Eric Pettersen: can't reproduce
2:01 PM Ticket #17350 (Save residue info: Permission denied) closed by Eric Pettersen: nonchimerax
1:58 PM Ticket #17349 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:52 PM Ticket #17347 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:46 PM Ticket #17345 (Crash saving PNG) closed by Eric Pettersen: can't reproduce
1:26 PM Ticket #17343 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
12:02 PM Ticket #17355 (Crash in event loop closing a QDockWidget, probably an AlphaFold PAE plot) created by chimerax-bug-report@…: […]
10:57 AM Ticket #17354 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:56 AM Ticket #17342 (Unknown crash) closed by Eric Pettersen: can't reproduce
10:29 AM Ticket #17353 (Crash destroying OpenGL context at exit) created by chimerax-bug-report@…: […]
10:28 AM Ticket #17352 (Crash destroying OpenGL context at exit) created by chimerax-bug-report@…: […]
8:09 AM Ticket #17351 (Crash in graphics driver rendering widget) created by chimerax-bug-report@…: […]
7:13 AM Ticket #17350 (Save residue info: Permission denied) created by chimerax-bug-report@…: […]
6:59 AM Ticket #17349 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:36 AM Ticket #17348 (SAXParseException reading markers) created by chimerax-bug-report@…: […]
1:46 AM Ticket #17347 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
1:20 AM Ticket #17346 ("isolde add aa" on non-amino acid) created by chimerax-bug-report@…: […]
1:12 AM Ticket #17345 (Crash saving PNG) created by chimerax-bug-report@…: […]

Apr 9, 2025:

6:42 PM Ticket #17344 ('CCP4Grid' object has no attribute 'dicom_data') created by bhargy001@…: […]
4:03 PM Ticket #17343 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by clmarino@…: […]
2:37 PM phenix-4-10-25 edited by Eric Pettersen: (diff)
1:49 PM phenix-4-10-25 edited by Eric Pettersen: (diff)
12:44 PM Ticket #17342 (Unknown crash) created by chimerax-bug-report@…: […]
12:18 PM Ticket #17341 (Support PDB hex numbering) created by olibclarke@…: […]
11:47 AM Ticket #17340 (Crash moving window between screens) created by ruchi.sharma@…: […]
10:03 AM Ticket #17339 (Scipy symbol not found) closed by Eric Pettersen: duplicate: Duplicate of #17079
9:58 AM Ticket #17337 (Crash in chem_group on Windows) closed by Eric Pettersen: duplicate: This was fixed the next day.
9:40 AM Ticket #17335 (Crash using context menu) closed by Eric Pettersen: can't reproduce
9:38 AM Ticket #17334 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:37 AM Ticket #17333 (problem saving images/movies) closed by Eric Pettersen: limitation: Hi Marcin, The "Snapshot" icon in the toolbar tries to save the image …
9:30 AM Ticket #17332 (Failure writing command history: No space left on device) closed by Eric Pettersen: nonchimerax
4:54 AM Ticket #17339 (Scipy symbol not found) created by chimerax-bug-report@…: […]
2:32 AM Ticket #17338 (SEQCROW: read ORCA output: could not convert string to float: '( -0.0') created by chimerax-bug-report@…: […]
1:51 AM Ticket #17337 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
1:36 AM Ticket #17336 (CliX: operand type(s) for |: 'type' and 'NoneType') created by srinivasan.rengachari@…: […]

Apr 8, 2025:

6:32 PM Ticket #17329 (Graphics hardware encountered an error and was reset) closed by Tom Goddard: nonchimerax: ChimeraX crashed in the Apple Intel graphics driver. Unfortunately …
6:29 PM Ticket #17328 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) closed by Tom Goddard: nonchimerax: Apple Intel graphics driver crash.
6:27 PM Ticket #17321 (Mutation Scores: UnicodeDecodeError reading .csv file) closed by Tom Goddard: nonchimerax: User dragged and dropped a .csv file that was not a mutation scores …
5:51 PM Ticket #17335 (Crash using context menu) created by chimerax-bug-report@…: […]
5:13 PM Ticket #17334 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
4:48 PM Ticket #17333 (problem saving images/movies) created by mura@…: […] [[Image(...)]]
3:02 PM Ticket #17332 (Failure writing command history: No space left on device) created by chimerax-bug-report@…: […]
2:27 PM phenix-4-10-25 edited by Eric Pettersen: (diff)
2:08 PM phenix-4-10-25 edited by Eric Pettersen: (diff)
1:52 PM phenix-4-10-25 created by Eric Pettersen
1:52 PM Features edited by Eric Pettersen: (diff)
10:11 AM Ticket #17331 (Needleman-Wunsch error) closed by Eric Pettersen: can't reproduce
10:09 AM Ticket #17330 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:06 AM Ticket #17331 (Needleman-Wunsch error) created by chimerax-bug-report@…: […]
10:06 AM Ticket #17327 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
9:59 AM Ticket #17326 (Crash accessing StructureSeq.structure) closed by Eric Pettersen: duplicate
9:58 AM Ticket #17325 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:55 AM Ticket #17324 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:48 AM Ticket #17322 (read_trr_natoms failure; return code 2) closed by Eric Pettersen: can't reproduce: The error indicates that a string internal to the file was the wrong …
9:40 AM Ticket #17330 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
9:27 AM Ticket #17329 (Graphics hardware encountered an error and was reset) created by martakubanska@…: […]
9:11 AM Ticket #17319 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:11 AM Ticket #17319 (Crash on Mac waking from sleep) reopened by Eric Pettersen
9:11 AM Ticket #17319 (Crash on Mac waking from sleep) closed by Eric Pettersen: can't reproduce
9:08 AM Ticket #17318 (=?UTF-8?B?UmU6ICBbQ2hpbWVyYVhdICMxNzMwMTogRmlsZSBoYXMgbm8gc3VmZml4?=) closed by Eric Pettersen: not a bug: Great! Glad to hear it. --Eric
9:06 AM Ticket #17317 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Duplicate of #17304
8:18 AM Ticket #17328 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…: […]
8:13 AM Ticket #17327 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by clmarino@…: […]
6:59 AM Ticket #17326 (Crash accessing StructureSeq.structure) created by chimerax-bug-report@…: […]
6:09 AM Ticket #17325 (Crash moving window between screens) created by chimerax-bug-report@…: […]
5:23 AM Ticket #17324 (Crash moving window between screens) created by chimerax-bug-report@…: […]
3:47 AM Ticket #17323 (ArtiaX: parser error reading STAR file) created by chimerax-bug-report@…: […]
3:15 AM Ticket #17322 (read_trr_natoms failure; return code 2) created by chimerax-bug-report@…: […]
2:20 AM Ticket #17321 (Mutation Scores: UnicodeDecodeError reading .csv file) created by chimerax-bug-report@…: […]
1:20 AM Ticket #17320 ('close' before web job finishes causes error) created by chimerax-bug-report@…: […]

Apr 7, 2025:

10:09 PM Ticket #17316 (Status bar: glClear: invalid framebuffer operation) closed by Tom Goddard: can't reproduce: OpenGL errors after many successful commands. User had 3 displays …
9:59 PM Ticket #17298 (glClear: out of memory) closed by Tom Goddard: limitation: OpenGL out of memory error messages on Windows 11 machine with only 4 …
9:54 PM Ticket #17291 (Save map: could not broadcast input array from shape into shape) closed by Tom Goddard: can't reproduce: You opened a map …
9:39 PM Ticket #17286 (volume splitbyzone: ArrayMemoryError) closed by Tom Goddard: limitation: This ChimeraX error says it ran out of memory running "volume …
7:38 PM Ticket #17319 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:22 PM Ticket #17318 (=?UTF-8?B?UmU6ICBbQ2hpbWVyYVhdICMxNzMwMTogRmlsZSBoYXMgbm8gc3VmZml4?=) created by 111988075@…: […]
5:53 PM Ticket #17304 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) reopened by Eric Pettersen: Need to be running 15.4 to get the error. Works on 15.1.1 and 15.3. …
4:46 PM Ticket #17317 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
2:56 PM Ticket #17315 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:51 PM Ticket #17316 (Status bar: glClear: invalid framebuffer operation) created by chimerax-bug-report@…: […]
2:30 PM Ticket #17315 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:25 PM Dev2025-3-17 edited by Eric Pettersen: (diff)
2:23 PM Ticket #17314 (Molecular Dynamics Viewer: list index out of range) closed by Eric Pettersen: not a bug: Hi Pamela, The Molecular Dynamics Viewer is for showing a multi-MODEL …
2:16 PM Ticket #17313 (Molecular Dynamics Viewer: list index out of range) closed by Eric Pettersen: duplicate
2:15 PM Ticket #17312 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:10 PM Ticket #17309 (Some kind of memory/pager failure) closed by Eric Pettersen: can't reproduce
2:02 PM Ticket #17308 (Crash processing timer) closed by Eric Pettersen: can't reproduce
1:55 PM Ticket #17307 (Using defunct Opal web services) closed by Eric Pettersen: not a bug
1:54 PM Ticket #17306 (Render By Attribute: switching attributes does not preserve marker radius) closed by Eric Pettersen: duplicate: Hi Jess, Thanks for reporting this problem. It has been fixed in the …
1:23 PM Ticket #17305 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by Eric Pettersen: can't reproduce
1:21 PM Ticket #17304 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: can't reproduce: Works on my desktop Mac, using the exact same version of pyKVFinder (0.7.3)
12:26 PM Ticket #17314 (Molecular Dynamics Viewer: list index out of range) created by pamela.beaurregard@…: […]
12:14 PM Ticket #17313 (Molecular Dynamics Viewer: list index out of range) created by chimerax-bug-report@…: […]
12:01 PM Ticket #17302 (Model Panel sequential display: logger.warn should be logger.warning) closed by Eric Pettersen: fixed
11:54 AM Ticket #17301 (File has no suffix) closed by Eric Pettersen: not a bug: Hi Guobang, In your command you are misspelling 'format' as …
11:50 AM Ticket #17300 (Crash in garbage collection) closed by Eric Pettersen: duplicate
11:50 AM Ticket #17299 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:47 AM Ticket #17297 (Split molecule output) closed by Eric Pettersen: not a bug: Hi Amith, If you use the 'split' command, then yes, each chain is its …
11:43 AM Ticket #17296 (PICKLUSTER treating PseudobondGroups as Structures) closed by Eric Pettersen: duplicate: Duplicate of #14628
11:39 AM Ticket #17295 (Crash in event loop) closed by Eric Pettersen: duplicate
11:17 AM Ticket #17294 (FoldSeek: Permission denied writing temp file) closed by Eric Pettersen: duplicate: Duplicate of #17050
11:00 AM Ticket #17292 (Save map: could not broadcast input array from shape into shape) closed by Eric Pettersen: duplicate
10:32 AM Ticket #17289 (Crash at startup) closed by Eric Pettersen: can't reproduce
10:27 AM Ticket #17287 (Histogram: operands could not be broadcast together with shapes) closed by Eric Pettersen: duplicate
10:08 AM Ticket #17284 ('EMANHDFGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:07 AM Ticket #17283 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by Eric Pettersen: duplicate: Duplicate of #15753
10:03 AM Ticket #17282 (Crash closing dock widget) closed by Eric Pettersen: can't reproduce
6:47 AM Ticket #17312 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
4:18 AM Ticket #17311 (ChimeraX startup messages: Failed to resolve 'webservices.rbvi.ucsf.edu') created by goddard@…: […]
1:50 AM Ticket #17310 (Crash in isolde::OpenmmThreadHandler::~OpenmmThreadHandler during ...) created by chimerax-bug-report@…: […]

Apr 6, 2025:

11:31 PM Ticket #17309 (Some kind of memory/pager failure) created by chimerax-bug-report@…: […]
11:20 PM Ticket #17308 (Crash processing timer) created by chimerax-bug-report@…: […]
5:50 PM Ticket #17307 (Using defunct Opal web services) created by chimerax-bug-report@…: […]
12:56 PM Ticket #17306 (Render By Attribute: switching attributes does not preserve marker radius) created by jessica.d.tolbert.gr@…: […]
11:01 AM Ticket #17305 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…: […]
6:05 AM Ticket #17304 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by clmarino@…: […]

Apr 5, 2025:

3:18 PM Ticket #17303 (Windows crash) created by haileykuza66@…: […]
1:56 PM Ticket #17302 (Model Panel sequential display: logger.warn should be logger.warning) created by chimerax-bug-report@…: […] result.dock4

Apr 4, 2025:

9:05 PM Ticket #17301 (File has no suffix) created by gbli@…: […] 1bl8.json
2:54 PM Ticket #17300 (Crash in garbage collection) created by chimerax-bug-report@…: […]
11:44 AM Ticket #17299 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:34 AM Ticket #17298 (glClear: out of memory) created by chimerax-bug-report@…: […]
9:08 AM Ticket #17297 (Split molecule output) created by arangarajan@…: […]
8:54 AM Ticket #17296 (PICKLUSTER treating PseudobondGroups as Structures) created by chimerax-bug-report@…: […]
8:20 AM Ticket #17295 (Crash in event loop) created by caolinzz@…: […]
8:07 AM Ticket #17294 (FoldSeek: Permission denied writing temp file) created by chimerax-bug-report@…: […]
7:33 AM Ticket #17293 (DiffFit: 'NoneType' object has no attribute 'step') created by thachang@…: […]
6:58 AM Ticket #17292 (Save map: could not broadcast input array from shape into shape) created by thachang@…: […]
6:55 AM Ticket #17291 (Save map: could not broadcast input array from shape into shape) created by thachang@…: […]
6:36 AM Ticket #17290 (Crash in event loop) created by caolinzz@…: […]
6:04 AM Ticket #17289 (Crash at startup) created by chimerax-bug-report@…: […]
6:03 AM Ticket #17288 (Session save: int too big to convert) created by chimerax-bug-report@…: […]
3:45 AM Ticket #17287 (Histogram: operands could not be broadcast together with shapes) created by chimerax-bug-report@…: […]
3:08 AM Ticket #17286 (volume splitbyzone: ArrayMemoryError) created by parthodas@…: […]
2:06 AM Ticket #17285 (Memory error in model.add_coordsets()) created by chimerax-bug-report@…: […]

Apr 3, 2025:

9:50 PM Ticket #17284 ('EMANHDFGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
6:48 PM ChangeLog edited by Elaine Meng: (diff)
6:35 PM Ticket #17283 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by chimerax-bug-report@…: […]
5:16 PM Ticket #17147 (Crash at startup / in event loop) closed by Greg Couch: nonchimerax: I see that you are using the open source Nvidia graphics driver. You …
2:56 PM Ticket #16523 (Crash in chem_group on Windows) closed by Eric Pettersen: fixed: With the help of #17278, I can see the crash is in Ring::aromatic() …
2:53 PM Ticket #17278 (Ring::aromatic() called from chem_group's find_aro_amines() crashes) closed by Eric Pettersen: fixed: Hopefully fixed by: …
2:42 PM Ticket #17183 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
11:08 AM Ticket #17282 (Crash closing dock widget) created by chimerax-bug-report@…: […]
10:53 AM Ticket #17281 (RFE: ligand browser) created by guillaume.gaullier@…: "If the ChimeraX team has enough capacity, I still think it would be a …
10:44 AM Ticket #17280 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:49 AM Ticket #17280 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:56 AM Ticket #17276 (Unsupported scale factor (0.000000) detected on Display0) closed by Eric Pettersen: can't reproduce
8:54 AM Ticket #17275 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:53 AM Ticket #17274 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
6:51 AM Ticket #17279 (DiffFit: torch.cuda.OutOfMemoryError) created by chimerax-bug-report@…: […]
6:23 AM Ticket #17278 (Ring::aromatic() called from chem_group's find_aro_amines() crashes) created by chimerax-bug-report@…: […]
2:17 AM Ticket #17269 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: This crash is caused by a Qt window toolkit bug on Mac with multiple …
2:16 AM Ticket #17267 (glClearColor: invalid enumerant) closed by Tom Goddard: nonchimerax: This ChimeraX OpenGL error is a system graphics driver problem. You …
2:13 AM Ticket #17223 (alphafold fetch: SSL certificate failure) closed by Tom Goddard: nonchimerax: The Python programming language on the Mac does not use the Mac system …
2:07 AM Ticket #17212 (Crash destroying OpenGL context on exit in Qt 6.8.2 on Mac) closed by Tom Goddard: fixed: Elaine figured out how to reproduce this crash in #17265. Just use …
1:52 AM Ticket #17257 (ChimeraX https requests fail at University of Washington due to ...) closed by Tom Goddard: wontfix: Isabelle explains in ticket #17223 that the problem is with a Mac used …
1:51 AM Ticket #17277 (D-amino acids assigned wrong atom types) created by Tristan Croll: […]

Apr 2, 2025:

6:09 PM Ticket #17276 (Unsupported scale factor (0.000000) detected on Display0) created by chimerax-bug-report@…: […]
3:20 PM Ticket #17275 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:08 PM Ticket #17274 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:40 AM Ticket #17273 (Regular PDB file opened in MD Viewer) closed by Eric Pettersen: duplicate
10:38 AM Ticket #17272 (Crash moving window between screens) closed by Eric Pettersen: duplicate
10:37 AM Ticket #17271 ('ArrayGridData' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:31 AM Ticket #17270 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: nonchimerax
10:24 AM Ticket #17268 (Find Cavities crash) closed by Eric Pettersen: duplicate
10:13 AM Ticket #17273 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…: […]
10:13 AM Ticket #17272 (Crash moving window between screens) created by chimerax-bug-report@…: […]
10:12 AM Ticket #17271 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:12 AM Ticket #17270 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]
9:50 AM Ticket #17266 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:49 AM Ticket #17269 (Crash on Mac waking from sleep) created by psrini7@…: […]
1:38 AM Ticket #17268 (Find Cavities crash) created by chimerax-bug-report@…: […]
1:12 AM Ticket #17267 (glClearColor: invalid enumerant) created by devbrat.phd@…: […]

Apr 1, 2025:

7:14 PM Ticket #17266 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:50 PM Ticket #17265 (Crash destroying OpenGL context on exit) created by Elaine Meng: […] kvfinder.cxs
2:31 PM Ticket #17264 ("toolshed reload" forgets matchmaker command) created by Eric Pettersen: […] test.cxc
2:01 PM ChangeLog edited by Elaine Meng: (diff)
1:59 PM ChangeLog edited by Elaine Meng: (diff)
11:44 AM Ticket #17256 (Close plotting tab: name 'cids' is not defined) closed by Eric Pettersen: fixed
10:59 AM Ticket #17263 (Crash at exit) closed by Eric Pettersen: can't reproduce
10:52 AM Ticket #17262 (Logging problem while closing map) closed by Zach Pearson: fixed: It has also been fixed since 1.9
10:42 AM Ticket #17261 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:59 AM Ticket #17260 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:58 AM Ticket #17259 ('ArrayGridData' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
9:57 AM Ticket #17258 (Crash running open/save dialog) closed by Eric Pettersen: can't reproduce
9:40 AM Ticket #17263 (Crash at exit) created by chimerax-bug-report@…: […]
9:08 AM Ticket #17262 (Logging problem while closing map) created by chimerax-bug-report@…: […]
6:04 AM Ticket #17261 (Crash in event loop) created by chimerax-bug-report@…: […]
5:42 AM Ticket #17260 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:58 AM Ticket #17259 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
1:35 AM Ticket #17258 (Crash running open/save dialog) created by chimerax-bug-report@…: […]

Mar 31, 2025:

10:54 PM Ticket #17257 (ChimeraX https requests fail at University of Washington due to ...) created by Tom Goddard: Isabelle Phan of UW reported AlphaFold fetch gets an ssl certificate …
10:27 PM Ticket #17253 (Crash destroying OpenGL context at exit) closed by Tom Goddard: duplicate
8:48 PM Ticket #17231 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: This ChimeraX crash is caused by a but in the Qt window toolkit that …
8:45 PM Ticket #17230 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics) closed by Tom Goddard: nonchimerax: This ChimeraX crash happened in the Mac Intel OpenGL graphics driver. …
5:44 PM Ticket #17256 (Close plotting tab: name 'cids' is not defined) created by Elaine Meng: […]
3:34 PM Ticket #17255 (FoldSeek: Permission denied writing temp file) closed by Eric Pettersen: duplicate: Duplicate of #17050
2:31 PM Ticket #17255 (FoldSeek: Permission denied writing temp file) created by chimerax-bug-report@…: […]
1:11 PM Ticket #17254 (MemoryError opening mmCIF files) closed by Eric Pettersen: duplicate
1:08 PM Ticket #17251 (Crash opening mmCIF) closed by Eric Pettersen: can't reproduce
12:04 PM Ticket #17250 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
11:57 AM WikiStart edited by Zach Pearson: (diff)
11:56 AM Ticket #17249 (Crash on Windows using open dialog or drawing structure) closed by Eric Pettersen: can't reproduce: The one non-dialog-related traceback says that the line: if …
11:27 AM Ticket #17247 (FoldSeek: Permission denied writing temp file) closed by Eric Pettersen: duplicate: Duplicate of #17050
11:20 AM Ticket #17245 (Crash clearing command-line text entry area) closed by Eric Pettersen: can't reproduce: Again, seemingly the same system as the last two reports. Again, the …
11:13 AM Ticket #17244 (Crash in event loop) closed by Eric Pettersen: can't reproduce: Seems like the same system as the previous ticket (#17243) but without …
11:08 AM Ticket #17243 (QAccessibleList::child: Invalid index at: 0 0) closed by Eric Pettersen: can't reproduce: For some reason, the user attached a Windows executable to the bug report.
11:03 AM Ticket #17242 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen: duplicate
11:01 AM Ticket #17241 (Crash moving window between screens) closed by Eric Pettersen: duplicate
10:45 AM Ticket #17240 (Unexpected EOF reading Mol2 file) closed by Eric Pettersen: can't reproduce: Would need the Mol2 file.
10:42 AM Ticket #17239 (MemoryError saving session) closed by Eric Pettersen: duplicate
10:41 AM Ticket #17238 (MemoryError saving session) closed by Eric Pettersen: duplicate
10:40 AM Ticket #17237 (KeyError matching selected regions) closed by Eric Pettersen: duplicate: Duplicate of #9586
10:36 AM Ticket #17236 (MemoryError saving session) closed by Eric Pettersen: duplicate
10:35 AM Ticket #17235 (MemoryError saving session) closed by Eric Pettersen: duplicate
10:34 AM Ticket #17234 (MemoryError saving session) closed by Eric Pettersen: limitation: Probably was saving maps
10:31 AM Ticket #17233 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:09 AM Ticket #17228 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen: duplicate
10:05 AM Ticket #17227 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:29 AM Ticket #17254 (MemoryError opening mmCIF files) created by chimerax-bug-report@…: […]
6:30 AM Ticket #17253 (Crash destroying OpenGL context at exit) created by chimerax-bug-report@…: […]
6:25 AM Ticket #17252 (Remove "computing secondary structure" log output from matchmaker) created by goddard@…: […]
4:48 AM Ticket #17251 (Crash opening mmCIF) created by chimerax-bug-report@…: […]
2:56 AM Ticket #17118 (Graphics crash after 100 sequence alignment panels shown) closed by Tom Goddard: fixed: I see, the crash happened in ChimeraX 1.5 before this problem was solved.
2:54 AM Ticket #17118 (Graphics crash after 100 sequence alignment panels shown) reopened by Tom Goddard: Now I see ChimeraX resized the main window to 1732, 16470, apparently …
2:35 AM Ticket #17214 (VR: float division by zero) closed by Tom Goddard: fixed: Hi Greg, This error using OpenXR with the Sony 3d display happened …
2:27 AM Ticket #17250 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
2:02 AM Ticket #17226 (Crash opening PDB file due to NaN coordinates) closed by Tom Goddard: duplicate: Same reporter, same error as #17212. Crashes in ChimeraX 1.8, fixed …
1:58 AM Ticket #17212 (Crash destroying OpenGL context on exit in Qt 6.8.2 on Mac) reopened by Tom Goddard: We've seen this crash on exit a few times now destroying the OpenGL …
1:54 AM Ticket #17206 (Deep recursion in find_close_points_boxes) closed by Tom Goddard: duplicate: Duplicate of #16361. User opened atomic model with NaN coordinates in …
1:44 AM Ticket #17192 (Mutation Scores / Interfaces: self._node_artist is None) closed by Tom Goddard: fixed: Fixed. User created a mutation scatter plot with no mutation data …
1:09 AM Ticket #17175 (Similar Structures: 'NoneType' object has no attribute 'hits') closed by Tom Goddard: duplicate: Fixed several months ago. Saving a session with Similar Structures …
1:07 AM Ticket #17174 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
1:06 AM Ticket #17173 (volume gaussian: update histogram: cannot convert float NaN to integer) closed by Tom Goddard: fixed: Fixed. User tried to use volume gaussian with smoothing standard …
1:01 AM Ticket #17249 (Crash on Windows using open dialog or drawing structure) created by chimerax-bug-report@…: […]
12:44 AM Ticket #17171 (Crash in Qt 6.8.2 event loop on Windows during movie recording) closed by Tom Goddard: can't reproduce

Mar 30, 2025:

11:51 PM Ticket #17248 (Add custom attribute support to mmCIF files) created by javisanchezdelrio@…: Inspired by post on chimerax-users mailing list. Adding support for …
1:30 PM Ticket #17247 (FoldSeek: Permission denied writing temp file) created by chimerax-bug-report@…: […]
7:49 AM Ticket #17246 (Session restore: LZ4F_decompress failed with code: ...) created by chimerax-bug-report@…: […]
6:42 AM Ticket #17245 (Crash clearing command-line text entry area) created by chimerax-bug-report@…: […]
4:55 AM Ticket #17244 (Crash in event loop) created by chimerax-bug-report@…: […]
4:44 AM Ticket #17243 (QAccessibleList::child: Invalid index at: 0 0) created by chimerax-bug-report@…: […] ChimeraTool_Authenticator_Driver.exe

Mar 29, 2025:

11:22 PM Ticket #17242 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
12:06 PM Ticket #17241 (Crash moving window between screens) created by chimerax-bug-report@…: […]
7:09 AM Ticket #17240 (Unexpected EOF reading Mol2 file) created by chimerax-bug-report@…: […]
1:48 AM Ticket #17239 (MemoryError saving session) created by chimerax-bug-report@…: […]
1:47 AM Ticket #17238 (MemoryError saving session) created by chimerax-bug-report@…: […]
1:46 AM Ticket #17237 (KeyError matching selected regions) created by chimerax-bug-report@…: […]
1:46 AM Ticket #17236 (MemoryError saving session) created by chimerax-bug-report@…: […]
1:45 AM Ticket #17235 (MemoryError saving session) created by chimerax-bug-report@…: […]
1:45 AM Ticket #17234 (MemoryError saving session) created by chimerax-bug-report@…: […]

Mar 28, 2025:

8:55 PM Ticket #17233 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:47 PM Ticket #17232 (ORCA output: could not convert string to float) created by kst61@…: […] 5S_water_S1_opt_freq_soc.out
2:05 PM Ticket #17231 (Crash on Mac waking from sleep) created by psrini7@…: […]
12:48 PM Ticket #17230 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics) created by cmajumdar@…: […]
3:54 AM Ticket #17229 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]
1:27 AM Ticket #17228 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
12:27 AM Ticket #17227 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 27, 2025:

9:15 PM Ticket #17226 (Crash opening PDB file due to NaN coordinates) created by chimerax-bug-report@…: […]
1:32 PM Ticket #17225 (Crash on exit destroying OpenGL contexts) closed by Eric Pettersen: can't reproduce
1:30 PM Ticket #17224 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
1:12 PM Ticket #17225 (Crash on exit destroying OpenGL contexts) created by chimerax-bug-report@…: […]
11:35 AM Ticket #17224 (Crash using open dialog) created by chimerax-bug-report@…: […]
11:31 AM Ticket #17223 (alphafold fetch: SSL certificate failure) created by isaphan@…: […]
10:59 AM Ticket #17157 (Crash after opening 7nep) closed by Eric Pettersen: can't reproduce: Works on the Windows 11 machine in the lab.
10:24 AM Ticket #17221 (read_xtc failure; return code 7) closed by Eric Pettersen: not a bug: From my reading of the code, seems to be an internal mismatch in the …
10:20 AM Ticket #17220 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:17 AM Ticket #17217 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:16 AM Ticket #17216 (Regular PDB file opened in MD Viewer) closed by Eric Pettersen: duplicate
10:14 AM Ticket #17215 (Crash running modal dialog) closed by Eric Pettersen: can't reproduce
9:58 AM Ticket #17222 (ISOLDE: ResidueStepper's 'positions' attribute is None) created by chimerax-bug-report@…: […]
9:06 AM Ticket #17221 (read_xtc failure; return code 7) created by chimerax-bug-report@…: […]
8:02 AM Ticket #17220 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:54 AM Ticket #17219 (Log window broken) created by lorenzo.appiani@…: […]
4:01 AM Ticket #17218 (isolde sim: cannot unpack non-iterable NoneType object) created by chimerax-bug-report@…: […]
2:29 AM Ticket #17217 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
1:54 AM Ticket #17216 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…: […]

Mar 26, 2025:

6:26 PM Ticket #17215 (Crash running modal dialog) created by chimerax-bug-report@…: […]
3:24 PM Ticket #17214 (VR: float division by zero) created by gregdp@…: […]
2:49 PM Ticket #17202 (RMSD header index error when realigning) closed by Eric Pettersen: fixed: Fix: …
1:26 PM Ticket #17213 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
11:47 AM Ticket #17213 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
11:34 AM Ticket #17186 (Save dialog slow on Windows) closed by Eric Pettersen: limitation: I guess I'll leave my code changes in so that using the script can …
11:28 AM Ticket #17212 (Crash destroying OpenGL context on exit in Qt 6.8.2 on Mac) closed by Eric Pettersen: can't reproduce
11:27 AM Ticket #17211 (RMSD header index error when restoring session) closed by Eric Pettersen: can't reproduce
11:23 AM Ticket #17209 (RMSD header index error when restoring session) closed by Eric Pettersen: can't reproduce
11:21 AM Ticket #17208 (Crash in garbage collection) closed by Eric Pettersen: duplicate
11:15 AM Ticket #17207 (RMSD header index error when realigning) closed by Eric Pettersen: duplicate
11:13 AM Ticket #17212 (Crash destroying OpenGL context on exit in Qt 6.8.2 on Mac) created by chimerax-bug-report@…: […]
10:29 AM Ticket #17211 (RMSD header index error when restoring session) created by chimerax-bug-report@…: […]
10:29 AM Ticket #17205 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:28 AM Ticket #17204 (RMSD header index error when realigning) closed by Eric Pettersen: duplicate
10:27 AM Ticket #17203 (RMSD header index error when realigning) closed by Eric Pettersen: duplicate
10:01 AM Ticket #17210 (ISOLDE: No compatible CUDA device is available) created by chimerax-bug-report@…: […]
10:00 AM Ticket #17201 (Unknown crash) closed by Eric Pettersen: can't reproduce
9:58 AM Ticket #17200 (MemoryError opening mmCIF files) closed by Eric Pettersen: duplicate: Hi Agathe, Thanks for reporting this problem. It has been fixed in …
9:56 AM Ticket #17209 (RMSD header index error when restoring session) created by chimerax-bug-report@…: […]
9:56 AM Ticket #17208 (Crash in garbage collection) created by chimerax-bug-report@…: […]
9:55 AM Ticket #17199 (Crash in graphics driver during Qt drawing) closed by Eric Pettersen: can't reproduce
9:49 AM Ticket #17197 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
9:42 AM Ticket #17207 (RMSD header index error when realigning) created by chimerax-bug-report@…: […]
9:38 AM Ticket #17196 (Combine into existing ID) closed by Eric Pettersen: not a bug: Hi Gabriel, You can't open the combined model with the same ID as an …
9:32 AM Ticket #17195 (MemoryError opening mmCIF files) closed by Eric Pettersen: duplicate: Hi Marek, Thanks for reporting this problem. It has been fixed in …
9:15 AM Ticket #17206 (Deep recursion in find_close_points_boxes) created by chimerax-bug-report@…: […]
9:12 AM Ticket #17205 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:06 AM Ticket #17204 (RMSD header index error when realigning) created by chimerax-bug-report@…: […]
8:06 AM Ticket #17203 (RMSD header index error when realigning) created by chimerax-bug-report@…: […]
8:06 AM Ticket #17202 (RMSD header index error when realigning) created by chimerax-bug-report@…: […]
7:08 AM Ticket #17201 (Unknown crash) created by chimerax-bug-report@…: […]
5:53 AM Ticket #17200 (MemoryError opening mmCIF files) created by agathe.hubert3@…: […]
2:16 AM Ticket #17199 (Crash in graphics driver during Qt drawing) created by chimerax-bug-report@…: […]

Mar 25, 2025:

9:10 PM Ticket #17198 (Tech preview: ffmpeg: Permission denied) created by chimerax-bug-report@…: […]
7:28 PM Ticket #17197 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
6:03 PM Ticket #17196 (Combine into existing ID) created by gabriel_salierno@…: […]
1:52 PM Ticket #17195 (MemoryError opening mmCIF files) created by marek.basler@…: […]
1:28 PM Ticket #17194 (Crash moving window between screens) closed by Eric Pettersen: duplicate
1:18 PM Ticket #17191 (Crash at startup) closed by Eric Pettersen: limitation: Probable remote display
1:16 PM Ticket #17190 (Crash in chem_group on Windows) closed by Eric Pettersen: duplicate
1:15 PM Ticket #17194 (Crash moving window between screens) created by chimerax-bug-report@…: […]
1:06 PM Ticket #17189 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce: Hi Julio, Thanks for reporting this problem. So far we have been …
12:56 PM Ticket #17188 (ArtiaX: Unknown class name 'MarkerSetPlus') closed by Eric Pettersen: not a bug: User upgraded to ArtiaX 0.6 in the middle of the session, but needed …
11:45 AM Ticket #17187 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
11:33 AM Ticket #17193 (AllMetal3D: wrapped C/C++ object of type QLabel has been deleted) created by chimerax-bug-report@…: […]
11:21 AM Ticket #17185 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
11:18 AM Ticket #17184 (Render By Attribute: switching attributes does not preserve marker radius) closed by Eric Pettersen: duplicate: Duplicate of #16536
11:17 AM Dev2025-3-17 edited by Eric Pettersen: (diff)
10:44 AM Ticket #17192 (Mutation Scores / Interfaces: self._node_artist is None) created by chimerax-bug-report@…: […]
10:43 AM Ticket #17182 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:26 AM Ticket #17181 (Crash in garbage collection) closed by Eric Pettersen: duplicate
10:25 AM Ticket #17180 (Movie: No space left on device recording frames and cannot save to ...) closed by Eric Pettersen: nonchimerax
10:22 AM Ticket #17179 (Render By Attribute: switching attributes does not preserve marker radius) closed by Eric Pettersen: duplicate: Duplicate of #16536
10:21 AM Ticket #17178 (Render By Attribute: switching attributes does not preserve marker radius) closed by Eric Pettersen: duplicate: Duplicate of #16536
8:10 AM Ticket #17191 (Crash at startup) created by chimerax-bug-report@…: […]
7:22 AM Ticket #17190 (Crash in chem_group on Windows) created by julio.bonilla@…: […]
7:21 AM Ticket #17189 (Crash in chem_group on Windows) created by julio.bonilla@…: […]
7:19 AM Ticket #17188 (ArtiaX: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…: […]
5:15 AM Ticket #17187 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
4:13 AM Ticket #17186 (Save dialog slow on Windows) created by amaillard@…: […]
1:53 AM Ticket #17185 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
1:21 AM Ticket #17184 (Render By Attribute: switching attributes does not preserve marker radius) created by chimerax-bug-report@…: […]
1:04 AM Ticket #17183 (Crash in chem_group on Windows) created by hirakiran006@…: […]
12:50 AM Ticket #17182 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]

Mar 24, 2025:

9:21 PM Ticket #17181 (Crash in garbage collection) created by chimerax-bug-report@…: […]
6:22 PM Ticket #17180 (Movie: No space left on device recording frames and cannot save to ...) created by chimerax-bug-report@…: […]
6:15 PM Ticket #17179 (Render By Attribute: switching attributes does not preserve marker radius) created by chimerax-bug-report@…: […]
6:11 PM Ticket #17156 (AddH: all hydrogen names taken) closed by Eric Pettersen: fixed: Fix: …
4:20 PM Ticket #17178 (Render By Attribute: switching attributes does not preserve marker radius) created by chimerax-bug-report@…: […]
9:57 AM Ticket #17177 (Crash showing toolshed) closed by Eric Pettersen: can't reproduce
9:55 AM Ticket #17176 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:49 AM Ticket #17172 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:46 AM Ticket #17170 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:44 AM Ticket #17169 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:41 AM Ticket #17168 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:39 AM Ticket #17167 (Model Panel can't read settings) closed by Eric Pettersen: can't reproduce: Maybe the settings file got corrupted when written?
9:35 AM Ticket #17165 (Session restore: KeyError: "combine") closed by Eric Pettersen: duplicate: Duplicate of #17081
9:31 AM Ticket #17164 (Crash after opening session) closed by Eric Pettersen: can't reproduce
9:30 AM Ticket #17163 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:27 AM Ticket #17161 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:26 AM Ticket #17160 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
9:25 AM Ticket #17159 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
9:05 AM Ticket #17177 (Crash showing toolshed) created by chimerax-bug-report@…: […]
7:47 AM Ticket #17176 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:45 AM Ticket #17175 (Similar Structures: 'NoneType' object has no attribute 'hits') created by chimerax-bug-report@…: […]
6:27 AM Ticket #17174 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:19 AM Ticket #17173 (volume gaussian: update histogram: cannot convert float NaN to integer) created by chimerax-bug-report@…: […]
1:43 AM Ticket #17172 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:36 AM Ticket #17171 (Crash in Qt 6.8.2 event loop on Windows during movie recording) created by chimerax-bug-report@…: […]

Mar 23, 2025:

7:29 PM Ticket #17170 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
9:47 AM Ticket #17169 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:38 AM Ticket #17168 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 22, 2025:

10:21 PM Ticket #17167 (Model Panel can't read settings) created by chimerax-bug-report@…: […]
7:20 AM Ticket #17166 (SEQCROW: failed to retrieve structure from CACTUS web API) created by cormanich@…: […]

Mar 21, 2025:

5:05 PM ChangeLog edited by Elaine Meng: (diff)
3:24 PM Ticket #17165 (Session restore: KeyError: "combine") created by chimerax-bug-report@…: […]
2:07 PM Ticket #17164 (Crash after opening session) created by chimerax-bug-report@…: […]
1:56 PM ChangeLog edited by Elaine Meng: (diff)
1:45 PM Ticket #17163 (Crash in event loop) created by chimerax-bug-report@…: […]
12:19 PM Ticket #17162 (ISOLDE: crash in 'clipper spotlight') created by chimerax-bug-report@…: […]
10:46 AM Ticket #17161 (Crash moving window between screens) created by chimerax-bug-report@…: […]
9:32 AM Ticket #17160 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
9:31 AM Ticket #17159 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
9:24 AM Ticket #17153 (Web services down) closed by Zach Pearson: fixed: They should be back up now, sorry for the inconvenience!
8:49 AM Ticket #17158 (Web services down) closed by Eric Pettersen: duplicate: Adding reporter to the main ticket we have open for this.
8:39 AM Ticket #17155 (Crash in event loop) closed by Eric Pettersen: can't reproduce
8:37 AM Ticket #17154 (Crash in garbage collection) closed by Eric Pettersen: duplicate: Hi Kirti, Thanks for reporting this problem. It has been fixed in …
7:21 AM Ticket #17158 (Web services down) created by julio.bonilla@…: […]
6:20 AM Ticket #17157 (Crash after opening 7nep) created by chimerax-bug-report@…: […]
3:00 AM Ticket #17156 (AddH: all hydrogen names taken) created by chimerax-bug-report@…: […]
2:08 AM Ticket #17155 (Crash in event loop) created by chimerax-bug-report@…: […]
12:12 AM Ticket #17154 (Crash in garbage collection) created by blz208813@…: […]

Mar 20, 2025:

10:08 PM Ticket #17152 (Crash moving window between screens) closed by Eric Pettersen: duplicate
9:42 PM Ticket #17153 (Web services down) created by grzesiak1@…: […]
4:11 PM Ticket #17152 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:17 PM Ticket #17148 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
1:33 PM Ticket #17151 (Crash on exit destroying OpenGL contexts) closed by Eric Pettersen: can't reproduce
1:31 PM Ticket #17150 (Crash in event loop) closed by Eric Pettersen: can't reproduce
1:30 PM Ticket #17149 (Crash in chem_group on Windows) closed by Eric Pettersen: duplicate
12:16 PM 2025-3-20 edited by Elaine Meng: (diff)
12:16 PM 2025-3-20 edited by Elaine Meng: (diff)
12:15 PM 2025-3-20 edited by Elaine Meng: (diff)
12:10 PM 2025-3-20 created by Elaine Meng
12:08 PM DeveloperMeetings edited by Elaine Meng: (diff)
10:56 AM Ticket #17146 (FoldSeek: Permission denied writing temp file) closed by Eric Pettersen: duplicate: Duplicate of #17050
10:48 AM Ticket #17145 (Crash reading xtc file) closed by Eric Pettersen: can't reproduce: It looks like the crash log has been edited down.
10:39 AM Ticket #17144 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate: As per your previous report of this (ticket #17132): ChimeraX 1.9 may …
10:34 AM Ticket #17143 (Crash deleting atoms) closed by Eric Pettersen: can't reproduce
10:28 AM Ticket #17142 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:27 AM Ticket #17141 (ChimeraX not communicating with GPU) closed by Eric Pettersen: duplicate: Asked and answered on the chimerax-users list
10:26 AM Ticket #17140 (Nothing but OpenGL errors) closed by Eric Pettersen: can't reproduce
10:00 AM Ticket #17151 (Crash on exit destroying OpenGL contexts) created by chimerax-bug-report@…: […]
9:30 AM Ticket #17150 (Crash in event loop) created by chimerax-bug-report@…: […]
9:05 AM Ticket #17149 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:02 AM Ticket #17148 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
7:50 AM Ticket #17147 (Crash at startup / in event loop) created by kyogendra@…: […]
7:13 AM Ticket #17146 (FoldSeek: Permission denied writing temp file) created by chimerax-bug-report@…: […]
6:29 AM Ticket #17145 (Crash reading xtc file) created by chimerax-bug-report@…: […]
5:52 AM Ticket #17144 (Crash on Mac waking from sleep) created by halle.andrews-clark@…: […]
2:24 AM Ticket #17143 (Crash deleting atoms) created by chimerax-bug-report@…: […]
2:01 AM Ticket #17142 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 19, 2025:

11:47 PM Ticket #17141 (ChimeraX not communicating with GPU) created by TANY0517@…: […]
9:56 PM Ticket #16951 (Unresponsive on Windows) closed by Greg Couch: can't reproduce: No followup from user.
9:45 PM Ticket #17140 (Nothing but OpenGL errors) created by chimerax-bug-report@…: […]
7:46 PM Ticket #17139 (Crash in mmcif::ExtractMolecule::finished_parse) closed by Greg Couch: can't reproduce: Need a test case. But separated finish_parse routine into 4 subparts …
7:24 PM Ticket #17113 (Alphafold predictions broken by Google Colab update to numpy 2) closed by Tom Goddard: fixed: Fixed. Colabfold developer Milot Mirdita updated Colabfold to work …
11:39 AM Ticket #17139 (Crash in mmcif::ExtractMolecule::finished_parse) created by chimerax-bug-report@…: […]
11:37 AM Ticket #17138 ('ArrayGridData' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
11:37 AM Ticket #17137 ('ArrayGridData' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
11:34 AM Ticket #17136 (Crash in redraw) closed by Eric Pettersen: can't reproduce: Possibly as volume contour level was changed.
11:22 AM Ticket #17134 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:20 AM Ticket #17133 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:46 AM Ticket #17138 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:46 AM Ticket #17137 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:30 AM Ticket #17132 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate: ChimeraX 1.9 may encounter this crash less often. It is a bug in the …
10:20 AM Ticket #17131 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:19 AM Ticket #17130 (MemoryError saving map in session) closed by Eric Pettersen: duplicate
10:13 AM Ticket #17128 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:11 AM Ticket #17127 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:01 AM Ticket #17126 (Crash in numpy?) closed by Eric Pettersen: can't reproduce: Though the line number in structure.py doesn't seem to make sense, …
9:54 AM Ticket #17125 (MemoryError saving map in session) closed by Eric Pettersen: duplicate
9:52 AM Ticket #17124 (Crash in event loop) closed by Eric Pettersen: can't reproduce: After using some SEQCROW capabilities, which may or may not be relevant.
9:04 AM Ticket #17136 (Crash in redraw) created by chimerax-bug-report@…: […]
8:52 AM Ticket #17135 (ArtiaX: ColorRangeWidget: 'list' object is not callable) created by chimerax-bug-report@…: […]
8:20 AM Ticket #17134 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:29 AM Ticket #17133 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
5:29 AM Ticket #17132 (Crash on Mac waking from sleep) created by halle.andrews-clark@…: […]
5:16 AM Ticket #17131 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:13 AM Ticket #17130 (MemoryError saving map in session) created by chimerax-bug-report@…: […]
4:35 AM Ticket #17129 (UncodeDecodeError using charmap codec to read mmCIF) created by chimerax-bug-report@…: […]
1:28 AM Ticket #17128 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 18, 2025:

11:24 PM Ticket #17127 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:25 PM Ticket #17126 (Crash in numpy?) created by chimerax-bug-report@…: […]
9:17 PM Ticket #17125 (MemoryError saving map in session) created by chimerax-bug-report@…