![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#17215 closed defect (can't reproduce)
Crash running modal dialog
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 1000000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookAir10,1",
"coalitionID" : 105829,
"osVersion" : {
"train" : "macOS 15.3",
"build" : "24D60",
"releaseType" : "User"
},
"captureTime" : "2025-03-27 09:26:04.3701 +0800",
"codeSigningMonitor" : 1,
"incident" : "5A0355F2-8480-4F0C-B1EB-1A36B66AE33E",
"pid" : 16196,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-03-27 09:13:17.6540 +0800",
"procStartAbsTime" : 24107320411434,
"procExitAbsTime" : 24125721982647,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"E5AA5BE9-FE5E-5395-9EDD-C4B65938E3BF","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "D01310E2-EFFE-3418-970D-8CBCF139FECF",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"IAL4twgAQPkQzX2S8QMAqjFc7fIwGsHa8QMQqvFHwdofAhHrQAAAVA==","atPC":"QI441Ag+wHmIBPg24QMCquIDEKroQP8XwANf1ggIQJIp6DTwKYEHkQ=="},
"bootSessionUUID" : "44ADBD3A-8618-49C3-9BDD-311E234DA9C7",
"wakeTime" : 890,
"sleepWakeUUID" : "1878225C-521B-4C80-9BBC-AB0E86DBE8F8",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000001, 0x0000000185927490","rawCodes":[1,6535935120],"type":"EXC_BREAKPOINT","signal":"SIGTRAP"},
"termination" : {"flags":0,"code":5,"namespace":"SIGNAL","indicator":"Trace\/BPT trap: 5","byProc":"exc handler","byPid":16196},
"os_fault" : {"process":"ChimeraX"},
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/Li/Downloads/cryosparc_P19_J324_006_volume_map.mrc
Opened cryosparc_P19_J324_006_volume_map.mrc as #1, grid size 320,320,320,
pixel 0.86, shown at level 0.0182, step 2, values float32
> volume #1 step 1
> volume #1 level 0.05487
> open /Users/Li/Downloads/cryosparc_P19_J325_005_volume_map.mrc
Opened cryosparc_P19_J325_005_volume_map.mrc as #2, grid size 320,320,320,
pixel 0.86, shown at level 0.0315, step 2, values float32
> volume #2 step 1
> volume #2 level 0.1041
> open
> /Volumes/data-4T/Projects/校外合作/SunLitao/4-BrxC/cryosparc_P22_J197_006_volume_map_2.8A.mrc
Opened cryosparc_P22_J197_006_volume_map_2.8A.mrc as #3, grid size
360,360,360, pixel 0.86, shown at level 0.0195, step 2, values float32
> volume #3 step 1
> volume #3 level 0.1218
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,0.77495,0,1,0,8.0807,0,0,1,10.048
> view matrix models #2,1,0,0,1.6505,0,1,0,5.0178,0,0,1,15.851
> view matrix models #2,1,0,0,1.7193,0,1,0,21.674,0,0,1,23.996
> view matrix models #2,1,0,0,2.2683,0,1,0,17.215,0,0,1,26.48
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.74456,-0.51036,0.43032,257.57,0.66035,-0.65757,0.36268,105.67,0.097867,0.5542,0.82661,-40.403
> view matrix models
> #2,-0.97186,-0.23079,-0.04711,316.64,0.17471,-0.84042,0.513,178.19,-0.15799,0.49034,0.85709,0.035788
> view matrix models
> #2,-0.51322,0.51667,0.68532,46.63,-0.22689,-0.85176,0.47225,241.57,0.82773,0.08688,0.55436,-39.481
> view matrix models
> #2,-0.91241,-0.40826,0.028884,322.52,0.40504,-0.89059,0.20687,195.48,-0.05873,0.20045,0.97794,9.8036
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.91241,-0.40826,0.028884,321.38,0.40504,-0.89059,0.20687,210.94,-0.05873,0.20045,0.97794,7.4251
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.92223,0.20238,0.32944,195.89,-0.1075,-0.95268,0.28434,280.49,0.37139,0.22681,0.90035,-45.607
> view matrix models
> #2,-0.77224,-0.62115,0.13346,316.95,0.63507,-0.74867,0.19021,161.31,-0.018231,0.23165,0.97263,-1.8494
> view matrix models
> #2,-0.87087,-0.47625,-0.12155,345.93,0.45779,-0.87595,0.15213,209.13,-0.17892,0.076836,0.98086,41.057
> view matrix models
> #2,-0.86539,-0.48792,-0.11414,345.76,0.48627,-0.87271,0.043792,219.73,-0.12098,-0.017604,0.9925,44.508
> select subtract #2
Nothing selected
> fitmap #2 inMap #3
Fit map cryosparc_P19_J325_005_volume_map.mrc in map
cryosparc_P22_J197_006_volume_map_2.8A.mrc using 113838 points
correlation = 0.8731, correlation about mean = 0.533, overlap = 3074
steps = 148, shift = 15, angle = 19.4 degrees
Position of cryosparc_P19_J325_005_volume_map.mrc (#2) relative to
cryosparc_P22_J197_006_volume_map_2.8A.mrc (#3) coordinates:
Matrix rotation and translation
-0.72660305 -0.67512205 0.12750774 331.75652426
0.68202304 -0.73117434 0.01512144 169.95003582
0.08302157 0.09795050 0.99172230 -1.92606106
Axis 0.06088591 0.03270085 0.99760892
Axis point 132.65843654 149.98299331 0.00000000
Rotation angle (degrees) 137.14080805
Shift along axis 23.83535223
> volume #2 level 0.09101
> volume #2 level 0.01624
> ui mousemode right zoom
> volume #2 level 0.08052
> open "/Volumes/data-4T/Projects/校外合作/SunLitao/5-BCZ-complex/C550BZ complex
> 结构预测/AlphaFold3/fold_2025_02_06_16_38_model_0.cif"
Chain information for fold_2025_02_06_16_38_model_0.cif #4
---
Chain | Description
A | .
B | .
C | .
Computing secondary structure
> hide #!3 models
> hide #!2 models
> show #!2 models
> ui mousemode right "translate selected models"
> select add #4
13472 atoms, 13772 bonds, 1651 residues, 1 model selected
> view matrix models #4,1,0,0,183.3,0,1,0,134.92,0,0,1,150.41
> select subtract #4
Nothing selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> select add #4
13472 atoms, 13772 bonds, 1651 residues, 1 model selected
> view matrix models #4,1,0,0,146.97,0,1,0,116.29,0,0,1,132.7
> ui mousemode right "rotate selected models"
> view matrix models
> #4,-0.40748,0.80981,-0.4221,138.49,-0.82555,-0.52426,-0.20886,111.97,-0.39042,0.26336,0.88216,130.34
> view matrix models
> #4,-0.3514,0.89022,-0.28988,140,-0.78279,-0.44922,-0.43063,109.81,-0.51358,0.075593,0.85471,129.73
> view matrix models
> #4,-0.57818,0.78983,0.20465,144.44,-0.13277,0.1564,-0.97873,105.96,-0.80503,-0.59305,0.014444,120.34
> view matrix models
> #4,0.34021,0.85297,0.39585,149.03,-0.92816,0.23702,0.28696,116.67,0.15094,-0.46504,0.87233,131.88
> view matrix models
> #4,-0.40454,0.76818,0.49624,147.94,-0.90227,-0.42378,-0.079521,113.07,0.14921,-0.47991,0.86454,131.8
> ui mousemode right "translate selected models"
> view matrix models
> #4,-0.40454,0.76818,0.49624,177.23,-0.90227,-0.42378,-0.079521,128.09,0.14921,-0.47991,0.86454,146.32
> select subtract #4
Nothing selected
> fitmap #4 inMap #2
Fit molecule fold_2025_02_06_16_38_model_0.cif (#4) to map
cryosparc_P19_J325_005_volume_map.mrc (#2) using 13472 atoms
average map value = 0.02812, steps = 136
shifted from previous position = 10.7
rotated from previous position = 5.69 degrees
atoms outside contour = 11853, contour level = 0.080518
Position of fold_2025_02_06_16_38_model_0.cif (#4) relative to
cryosparc_P19_J325_005_volume_map.mrc (#2) coordinates:
Matrix rotation and translation
-0.30333288 -0.89731410 -0.32065021 104.86768529
0.95288411 -0.28600189 -0.10106826 146.21429275
-0.00101659 -0.33619982 0.94179013 131.88090072
Axis -0.12425899 -0.16891544 0.97776647
Axis point 1.74245447 126.96959315 0.00000000
Rotation angle (degrees) 108.89121298
Shift along axis 91.22011994
> fitmap #4 inMap #2
Fit molecule fold_2025_02_06_16_38_model_0.cif (#4) to map
cryosparc_P19_J325_005_volume_map.mrc (#2) using 13472 atoms
average map value = 0.02812, steps = 60
shifted from previous position = 0.0144
rotated from previous position = 0.00463 degrees
atoms outside contour = 11858, contour level = 0.080518
Position of fold_2025_02_06_16_38_model_0.cif (#4) relative to
cryosparc_P19_J325_005_volume_map.mrc (#2) coordinates:
Matrix rotation and translation
-0.30333144 -0.89733827 -0.32058394 104.88150563
0.95288455 -0.28601374 -0.10103054 146.21703387
-0.00103284 -0.33612522 0.94181674 131.88426782
Axis -0.12423914 -0.16887133 0.97777662
Axis point 1.74802229 126.97299329 0.00000000
Rotation angle (degrees) 108.89072283
Shift along axis 91.23110048
> fitmap #4 inMap #2
Fit molecule fold_2025_02_06_16_38_model_0.cif (#4) to map
cryosparc_P19_J325_005_volume_map.mrc (#2) using 13472 atoms
average map value = 0.02812, steps = 64
shifted from previous position = 0.0136
rotated from previous position = 0.00758 degrees
atoms outside contour = 11856, contour level = 0.080518
Position of fold_2025_02_06_16_38_model_0.cif (#4) relative to
cryosparc_P19_J325_005_volume_map.mrc (#2) coordinates:
Matrix rotation and translation
-0.30332930 -0.89730138 -0.32068921 104.86857836
0.95288527 -0.28598792 -0.10109685 146.21461903
-0.00099890 -0.33624566 0.94177378 131.88040976
Axis -0.12426808 -0.16894536 0.97776015
Axis point 1.74241882 126.97242873 0.00000000
Rotation angle (degrees) 108.89117665
Shift along axis 91.21331198
> ui mousemode right zoom
> select /A
4670 atoms, 4769 bonds, 574 residues, 1 model selected
> color sel bychain
> color sel bypolymer
> select clear
> color bychain
> hide #4 models
> open
> /Volumes/data-4T/Projects/校外合作/SunLitao/4-BrxC/RealSpaceRefine_8/N550-dimer-
> inimod-coot-8_real_space_refined_008-coot_pro-addAGS.pdb
Chain information for N550-dimer-inimod-
coot-8_real_space_refined_008-coot_pro-addAGS.pdb #5
---
Chain | Description
A B | No description available
> fitmap #5 inMap #2
Fit molecule N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) to map cryosparc_P19_J325_005_volume_map.mrc (#2) using 9114
atoms
average map value = 0.1511, steps = 44
shifted from previous position = 0.026
rotated from previous position = 0.0664 degrees
atoms outside contour = 1817, contour level = 0.080518
Position of N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) relative to cryosparc_P19_J325_005_volume_map.mrc (#2)
coordinates:
Matrix rotation and translation
-0.72712412 0.68158076 0.08208640 125.63010234
-0.67470218 -0.73157276 0.09786864 348.44159648
0.12675756 0.01577878 0.99180822 -42.97175111
Axis -0.06038244 -0.03285854 -0.99763434
Axis point 132.75002980 149.95502968 0.00000000
Rotation angle (degrees) 137.17592669
Shift along axis 23.83496003
> fitmap #5 inMap #2
Fit molecule N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) to map cryosparc_P19_J325_005_volume_map.mrc (#2) using 9114
atoms
average map value = 0.1511, steps = 40
shifted from previous position = 0.00859
rotated from previous position = 0.0112 degrees
atoms outside contour = 1822, contour level = 0.080518
Position of N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) relative to cryosparc_P19_J325_005_volume_map.mrc (#2)
coordinates:
Matrix rotation and translation
-0.72711228 0.68157819 0.08221250 125.60398173
-0.67471648 -0.73157932 0.09772087 348.47513943
0.12674938 0.01558392 0.99181235 -42.93735720
Axis -0.06041662 -0.03275953 -0.99763553
Axis point 132.74338461 149.97389489 0.00000000
Rotation angle (degrees) 137.17553067
Shift along axis 23.83138321
> fitmap #5 inMap #2
Fit molecule N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) to map cryosparc_P19_J325_005_volume_map.mrc (#2) using 9114
atoms
average map value = 0.1511, steps = 44
shifted from previous position = 0.00985
rotated from previous position = 0.0131 degrees
atoms outside contour = 1820, contour level = 0.080518
Position of N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb (#5) relative to cryosparc_P19_J325_005_volume_map.mrc (#2)
coordinates:
Matrix rotation and translation
-0.72712327 0.68157480 0.08214343 125.61887901
-0.67468666 -0.73157806 0.09793600 348.42976262
0.12684504 0.01579047 0.99179685 -42.97552523
Axis -0.06042414 -0.03288135 -0.99763106
Axis point 132.74221142 149.95212542 0.00000000
Rotation angle (degrees) 137.17659352
Shift along axis 23.82646353
> hide #5 models
> show #5 models
> volume #2 color #ffffb271
> show #4 models
> hide #4 models
> show #4 models
> ui tool show Matchmaker
> hide #!2 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #5 models
> matchmaker #4/A to #5/A pairing ss
Computing secondary structure
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker N550-dimer-inimod-coot-8_real_space_refined_008-coot_pro-
addAGS.pdb, chain A (#5) with fold_2025_02_06_16_38_model_0.cif, chain A (#4),
sequence alignment score = 2667.4
RMSD between 296 pruned atom pairs is 1.105 angstroms; (across all 559 pairs:
7.886)
> show #!2 models
> show #5 models
> select #4/B
1669 atoms, 1711 bonds, 206 residues, 1 model selected
> select clear
> hide #5 models
> hide #!2 models
> select #4/B
1669 atoms, 1711 bonds, 206 residues, 1 model selected
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Model Number: Z1250003LCH/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 11881.81.2
OS Loader Version: 11881.81.2
Software:
System Software Overview:
System Version: macOS 15.3 (24D60)
Kernel Version: Darwin 24.3.0
Time since boot: 25 days, 22 hours, 9 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 8 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash running modal dialog |
comment:2 by , 8 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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