![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 months ago
Closed 7 months ago
#17227 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.5.2-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001023ebd40 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atom_search.ast, chimerax.chem_group._chem_group, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, PIL._imagingmath, PIL._webp, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, lxml._elementpath, lxml.etree (total: 62)
Process: ChimeraX [91739]
Path: /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.8.0 (1.8.0.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [91739]
User ID: 502
Date/Time: 2025-03-27 09:15:38.915 +0100
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Anonymous UUID: DF00004B-C212-29E0-464F-56D4B1C89900
Sleep/Wake UUID: 8C2302B0-3D45-4C41-A7B9-EE377339AD25
Time Awake Since Boot: 4100000 seconds
Time Since Wake: 6 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x8:
-->
__TEXT 102044000-102048000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.8.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x000000018a188e68 __pthread_kill + 8
1 libsystem_pthread.dylib 0x000000018a1bb43c pthread_kill + 292
2 libsystem_c.dylib 0x000000018a09ae10 raise + 32
3 org.python.python 0x0000000102686208 faulthandler_fatal_error + 392
4 libsystem_platform.dylib 0x000000018a206c44 _sigtramp + 56
5 QtGui 0x00000001278cd3e0 QWindowPrivate::updateDevicePixelRatio() + 220
6 QtGui 0x00000001278cd3e0 QWindowPrivate::updateDevicePixelRatio() + 220
7 QtGui 0x00000001278d46ec 0x127800000 + 870124
8 QtCore 0x00000001140cc240 0x114000000 + 836160
9 QtGui 0x00000001278cbd08 QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 80
10 QtGui 0x00000001278d6720 QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*) + 684
11 libqcocoa.dylib 0x0000000137dfa8f4 0x137dd0000 + 174324
12 libqcocoa.dylib 0x0000000137df9078 0x137dd0000 + 168056
13 libqcocoa.dylib 0x0000000137dfefa0 0x137dd0000 + 192416
14 com.apple.Foundation 0x000000018b036104 -[__NSObserver _doit:] + 348
15 com.apple.CoreFoundation 0x000000018a2af2f8 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 28
16 com.apple.CoreFoundation 0x000000018a35123c ___CFXRegistrationPost_block_invoke + 52
17 com.apple.CoreFoundation 0x000000018a3511a8 _CFXRegistrationPost + 440
18 com.apple.CoreFoundation 0x000000018a27ddc8 _CFXNotificationPost + 720
19 com.apple.Foundation 0x000000018b0083c0 -[NSNotificationCenter postNotificationName:object:userInfo:] + 64
20 com.apple.AppKit 0x000000018d5d74b8 ___NSApplicationReactToScreenInvalidation_block_invoke + 876
21 com.apple.AppKit 0x000000018d5d6ed0 _NSApplicationReactToScreenInvalidation + 300
22 com.apple.AppKit 0x000000018d5d70c4 -[NSApplication(ScreenHandling) _reactToDisplayChanges:] + 396
23 com.apple.AppKit 0x000000018d1961ec _NSCGSDisplayConfigurationUpdateAndInvokeObservers + 456
24 com.apple.AppKit 0x000000018d196bd4 _NSCGSDisplayConfigurationColorProfileChangedNotificationHandler + 284
25 com.apple.SkyLight 0x000000018ea908cc (anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*) + 916
26 com.apple.SkyLight 0x000000018ed361d4 CGSDatagramReadStream::dispatchMainQueueDatagrams() + 228
27 com.apple.SkyLight 0x000000018ed360d0 invocation function for block in CGSDatagramReadStream::mainQueueWakeup() + 28
28 libdispatch.dylib 0x000000018a00a128 _dispatch_call_block_and_release + 32
29 libdispatch.dylib 0x000000018a00bec0 _dispatch_client_callout + 20
30 libdispatch.dylib 0x000000018a01a314 _dispatch_main_queue_callback_4CF + 884
31 com.apple.CoreFoundation 0x000000018a2facd8 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 16
32 com.apple.CoreFoundation 0x000000018a2b96ec __CFRunLoopRun + 2524
33 com.apple.CoreFoundation 0x000000018a2b8598 CFRunLoopRunSpecific + 600
34 com.apple.HIToolbox 0x00000001921dd280 RunCurrentEventLoopInMode + 292
35 com.apple.HIToolbox 0x00000001921dcff4 ReceiveNextEventCommon + 552
36 com.apple.HIToolbox 0x00000001921dcdb4 _BlockUntilNextEventMatchingListInModeWithFilter + 72
37 com.apple.AppKit 0x000000018caa9660 _DPSNextEvent + 836
38 com.apple.AppKit 0x000000018caa8000 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
39 com.apple.AppKit 0x000000018ca99e4c -[NSApplication run] + 596
40 libqcocoa.dylib 0x0000000137de3f6c 0x137dd0000 + 81772
41 QtCore 0x000000011408c14c QEventLoop::exec(QFlags) + 540
42 QtCore 0x0000000114082adc QCoreApplication::exec() + 112
43 QtWidgets.abi3.so 0x000000011726439c meth_QApplication_exec(_object*, _object*) + 96
44 org.python.python 0x000000010252d3d8 cfunction_call + 96
45 org.python.python 0x00000001024c90ec _PyObject_MakeTpCall + 128
46 org.python.python 0x00000001025ecd3c _PyEval_EvalFrameDefault + 54984
47 org.python.python 0x00000001025de3e8 PyEval_EvalCode + 276
48 org.python.python 0x00000001025d8c70 builtin_exec + 428
49 org.python.python 0x000000010252ddc4 cfunction_vectorcall_FASTCALL_KEYWORDS + 80
50 org.python.python 0x00000001025ec984 _PyEval_EvalFrameDefault + 54032
51 org.python.python 0x00000001025f23cc _PyEval_Vector + 156
52 org.python.python 0x000000010267f424 pymain_run_module + 256
53 org.python.python 0x000000010267eec4 Py_RunMain + 1784
54 org.python.python 0x0000000102680074 pymain_main + 52
55 org.python.python 0x0000000102680034 Py_Main + 36
56 edu.ucsf.cgl.ChimeraX 0x0000000102047d54 main + 128
57 libdyld.dylib 0x000000018a1d9430 start + 4
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x000000018a18bee8 kevent64 + 8
1 QtWebEngineCore 0x000000015bf9d9b8 0x158000000 + 66705848
2 QtWebEngineCore 0x000000015bf9d7b0 0x158000000 + 66705328
3 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
4 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
5 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
6 QtWebEngineCore 0x000000015bf4f1a0 0x158000000 + 66384288
7 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 2:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf5a3c4 0x158000000 + 66429892
5 QtWebEngineCore 0x000000015bf5b1b8 0x158000000 + 66433464
6 QtWebEngineCore 0x000000015bf5ac10 0x158000000 + 66432016
7 QtWebEngineCore 0x000000015bf5ab00 0x158000000 + 66431744
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf5a3c4 0x158000000 + 66429892
5 QtWebEngineCore 0x000000015bf5b1b8 0x158000000 + 66433464
6 QtWebEngineCore 0x000000015bf5ab8c 0x158000000 + 66431884
7 QtWebEngineCore 0x000000015bf5ab30 0x158000000 + 66431792
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x000000018a18bee8 kevent64 + 8
1 QtWebEngineCore 0x000000015bf9d9b8 0x158000000 + 66705848
2 QtWebEngineCore 0x000000015bf9d7b0 0x158000000 + 66705328
3 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
4 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
5 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
6 QtWebEngineCore 0x000000015a8321f0 0x158000000 + 42148336
7 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf2165c 0x158000000 + 66197084
5 QtWebEngineCore 0x000000015bed1b34 0x158000000 + 65870644
6 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
7 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
8 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
9 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
10 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
11 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bed1ad0 0x158000000 + 65870544
5 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
6 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
7 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
8 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
9 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
10 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x000000018a18bee8 kevent64 + 8
1 QtWebEngineCore 0x000000015bf9d9b8 0x158000000 + 66705848
2 QtWebEngineCore 0x000000015bf9d7b0 0x158000000 + 66705328
3 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
4 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
5 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
6 QtWebEngineCore 0x000000015e6f2e14 0x158000000 + 107949588
7 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 QtWebEngineCore 0x000000015bf807a4 0x158000000 + 66586532
3 QtWebEngineCore 0x000000015ded7364 0x158000000 + 99447652
4 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 9:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf5a3c4 0x158000000 + 66429892
5 QtWebEngineCore 0x000000015bf5ad94 0x158000000 + 66432404
6 QtWebEngineCore 0x000000015bf5ac3c 0x158000000 + 66432060
7 QtWebEngineCore 0x000000015bf5ab48 0x158000000 + 66431816
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf2165c 0x158000000 + 66197084
5 QtWebEngineCore 0x000000015bed1b34 0x158000000 + 65870644
6 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
7 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
8 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
9 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
10 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
11 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bed1ad0 0x158000000 + 65870544
5 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
6 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
7 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
8 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
9 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
10 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
11 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 12:: NetworkService
0 libsystem_kernel.dylib 0x000000018a18bee8 kevent64 + 8
1 QtWebEngineCore 0x000000015bf9d9b8 0x158000000 + 66705848
2 QtWebEngineCore 0x000000015bf9d7b0 0x158000000 + 66705328
3 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
4 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
5 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
6 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
7 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
8 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
9 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf2165c 0x158000000 + 66197084
5 QtWebEngineCore 0x000000015bed1b34 0x158000000 + 65870644
6 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
7 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
8 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
9 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
10 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
11 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 14:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf5a3c4 0x158000000 + 66429892
5 QtWebEngineCore 0x000000015bf5b1b8 0x158000000 + 66433464
6 QtWebEngineCore 0x000000015bf5ac68 0x158000000 + 66432104
7 QtWebEngineCore 0x000000015bf5ab3c 0x158000000 + 66431804
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf2165c 0x158000000 + 66197084
5 QtWebEngineCore 0x000000015bed1b34 0x158000000 + 65870644
6 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
7 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
8 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
9 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
10 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
11 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 16:: MemoryInfra
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf2165c 0x158000000 + 66197084
5 QtWebEngineCore 0x000000015bed1b34 0x158000000 + 65870644
6 QtWebEngineCore 0x000000015bf43620 0x158000000 + 66336288
7 QtWebEngineCore 0x000000015bf01080 0x158000000 + 66064512
8 QtWebEngineCore 0x000000015bf675c0 0x158000000 + 66483648
9 QtWebEngineCore 0x000000015bf67740 0x158000000 + 66484032
10 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
11 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
12 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 QtWebEngineCore 0x000000015bfa64b0 0x158000000 + 66741424
3 QtWebEngineCore 0x000000015bf216f4 0x158000000 + 66197236
4 QtWebEngineCore 0x000000015bf5a3c4 0x158000000 + 66429892
5 QtWebEngineCore 0x000000015bf5ad94 0x158000000 + 66432404
6 QtWebEngineCore 0x000000015bf5abb8 0x158000000 + 66431928
7 QtWebEngineCore 0x000000015bf5ab60 0x158000000 + 66431840
8 QtWebEngineCore 0x000000015bf812a8 0x158000000 + 66589352
9 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
10 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 18:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 19:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 20:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 21:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 22:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 23:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 24:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 25:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libc++.1.dylib 0x000000018a115efc std::__1::condition_variable::wait(std::__1::unique_lock&) + 28
3 QtWebEngineCore 0x000000015dabf978 0x158000000 + 95156600
4 QtWebEngineCore 0x000000015dac0a88 0x158000000 + 95160968
5 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
6 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 26:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x000000018a180dd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018a181184 mach_msg + 76
2 com.apple.CoreFoundation 0x000000018a2bad00 __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x000000018a2b91cc __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x000000018a2b8598 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x000000018cc28334 _NSEventThread + 196
6 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
7 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 27:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 28:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 29:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 30:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 31:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 32:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 33:
0 libsystem_kernel.dylib 0x000000018a184548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x000000018a1bbdac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x000000010516eb58 blas_thread_server + 360
3 libsystem_pthread.dylib 0x000000018a1bb878 _pthread_start + 320
4 libsystem_pthread.dylib 0x000000018a1b65e0 thread_start + 8
Thread 34:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 35:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 36:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 37:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 38:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 39:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 40:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 41:
0 libsystem_pthread.dylib 0x000000018a1b65cc start_wqthread + 0
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x000000016ddb7c38
x4: 0x000000000000006c x5: 0x0000000000000064 x6: 0x00006000007c5c80 x7: 0x0000000107ace9e9
x8: 0x714918bdb78c0491 x9: 0x714918bcb5b2b9d1 x10: 0x0000000000001bba x11: 0x000000020110fb5e
x12: 0x000000020110fb5e x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x00000001f8c3ee90 x18: 0x00000001644d283c x19: 0x000000000000000b
x20: 0x00000001023ebd40 x21: 0x0000000000000103 x22: 0x00000001023ebe20 x23: 0x0000000000000001
x24: 0x000000010284c630 x25: 0x00006000017f4960 x26: 0x000000029e722108 x27: 0x0000600003232680
x28: 0x00000001023ebd40 fp: 0x000000016ddb7c80 lr: 0x000000018a1bb43c
sp: 0x000000016ddb7c60 pc: 0x000000018a188e68 cpsr: 0x40000000
far: 0x00000001023b84dc esr: 0x56000080
Binary Images:
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0x107f98000 - 0x107faffff +QtWebEngineWidgets (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
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0x1a5e3d000 - 0x1a5e44fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x1a627b000 - 0x1a6280fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x1a63f4000 - 0x1a640ffff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x1a65ce000 - 0x1a65d9fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x1a65ee000 - 0x1a6600fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x1a661e000 - 0x1a6752fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x1a6753000 - 0x1a6959fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x1a695a000 - 0x1a6a64fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x1a6a65000 - 0x1a6a76fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x1a70ca000 - 0x1a7123fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x1a7124000 - 0x1a7149fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x1a7320000 - 0x1a7396fff com.apple.Safari.Core (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x1a7397000 - 0x1a7509fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x1a750a000 - 0x1a77cefff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x1a7822000 - 0x1a793efff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x1a793f000 - 0x1a7df7fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x1a7df8000 - 0x1a7ed8fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x1a8c35000 - 0x1a8cb7fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x1a9c4d000 - 0x1a9c7dfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x1a9ce2000 - 0x1a9ce5fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x1a9fe1000 - 0x1a9ffafff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x1ab6b3000 - 0x1ac29efff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x1ac29f000 - 0x1ac39afff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x1ac39b000 - 0x1ac3b2fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x1ac3b3000 - 0x1ac413fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x1ac414000 - 0x1ac42ffff com.apple.SafariFoundation (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x1ac430000 - 0x1ac436fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x1ac437000 - 0x1ac656fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x1aceff000 - 0x1acf03fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x1ae823000 - 0x1ae826fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x1b04b3000 - 0x1b04eefff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x1b0d38000 - 0x1b0d53fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x1b9d7e000 - 0x1b9dabfff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x1b9dac000 - 0x1b9dc6fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x1b9dc7000 - 0x1b9e65fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x1ba063000 - 0x1ba066fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x1bc588000 - 0x1bc5c2fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x1bdc08000 - 0x1bdc0bfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x1ca01c000 - 0x1ca020fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x1cc26e000 - 0x1cc274fff libCoreFSCache.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x1cc275000 - 0x1cc27afff libCoreVMClient.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x1cc27b000 - 0x1cc28afff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x1cc28b000 - 0x1cc28dfff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x1cc28e000 - 0x1cc296fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x1cc297000 - 0x1cc2cffff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x1cc2d0000 - 0x1cc308fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x1cc309000 - 0x1cc475fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x1cc476000 - 0x1cc480fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x1cc481000 - 0x1cc5ebfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x1cc5ec000 - 0x1cc610fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x1cc611000 - 0x1cc670fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x1cd0ef000 - 0x1cd0f6fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x1cd0f7000 - 0x1cd1ddfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x1cf6bb000 - 0x1cf6c6fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x1d58c6000 - 0x1d58d1fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x1d5aeb000 - 0x1d5b04fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x1dd6e0000 - 0x1dd6e7fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
0x292560000 - 0x2925cffff +mmcif.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mmcif/mmcif.cpython-311-darwin.so
0x292600000 - 0x292613fff +_ribbons.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/_ribbons.cpython-311-darwin.so
0x29262c000 - 0x29262ffff +_graphics.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/_graphics.cpython-311-darwin.so
0x292644000 - 0x292667fff +_pdbio.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/pdb/_pdbio.cpython-311-darwin.so
0x292700000 - 0x2927b7fff +QtOpenGL.abi3.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtOpenGL.abi3.so
0x2939f8000 - 0x293a5bfff +_mmcif.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/mmcif/_mmcif.cpython-311-darwin.so
0x293b88000 - 0x293b9bfff +numpy_formathandler.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL_accelerate/numpy_formathandler.cpython-311-darwin.so
0x293e48000 - 0x293e53fff +nones_formathandler.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/OpenGL_accelerate/nones_formathandler.cpython-311-darwin.so
0x2c20c8000 - 0x2c24affff +etree.cpython-311-darwin.so (0) /Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/lxml/etree.cpython-311-darwin.so
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 2304K 12
CG image 1536K 67
CoreAnimation 1728K 81
CoreGraphics 80K 5
CoreServices 624K 2
CoreUI image data 3600K 38
Foundation 48K 2
Kernel Alloc Once 32K 1
MALLOC 610.9M 684
MALLOC guard page 192K 9
MALLOC_MEDIUM (reserved) 728.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 64K 4
OpenGL GLSL 384K 4
STACK GUARD 56.7M 42
Stack 157.0M 42
VM_ALLOCATE 217.4M 288
VM_ALLOCATE (reserved) 128.0M 3 reserved VM address space (unallocated)
__AUTH 1074K 276
__AUTH_CONST 15.9M 469
__DATA 19.5M 634
__DATA_CONST 26.8M 631
__DATA_DIRTY 1833K 223
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 520.9M 171
__OBJC_CONST 3414K 264
__OBJC_RO 75.1M 1
__OBJC_RW 2576K 1
__TEXT 610.6M 652
__UNICODE 588K 1
mapped file 619.5M 87
shared memory 3152K 22
=========== ======= =======
TOTAL 4.1G 4729
TOTAL, minus reserved VM space 2.9G 4729
System Profile:
Network Service: Wi-Fi, AirPort, en0
Network Service: KTHLAN, IPSec, utun2
Boot Volume File System Type: apfs
Memory Module: LPDDR4
USB Device: USB 3.1 Bus
USB Device: USB 3.1 Bus
USB Device: USB3.0 Hub
USB Device: USB2.0 Hub
USB Device: USB-C 4-in-1 Multiport Adapter
Thunderbolt Bus: MacBook Pro, Apple Inc.
Thunderbolt Bus: MacBook Pro, Apple Inc.
Model: MacBookPro17,1, BootROM 6723.140.2, proc 8:4:4 processors, 16 GB, SMC
Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Jul 7 2021 00:48:27 version 18.50.40.10.7.8.121 FWID 01-f5ad2691
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_e46k/fold_2024_05_27_15_34_sq4_with_asyn25_65_e46k_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_e46k_model_0.cif #1
---
Chain | Description
A | .
B | .
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
> select /B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel red
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:27-28
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:27-28
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> hide #1 models
> show #1 models
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> interfaces ~solvent
1 buried areas: A B 1157
> show sel atoms
> hbonds sel reveal true
48 hydrogen bonds found
> select add #1
1072 atoms, 1086 bonds, 48 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> ~hbonds
> hbonds sel reveal true
48 hydrogen bonds found
> select add #1
1072 atoms, 1086 bonds, 48 pseudobonds, 147 residues, 2 models selected
> ~hbonds
> select subtract #1
Nothing selected
> hbonds sel reveal true
33 hydrogen bonds found
> ~hbonds
> hide sel atoms
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> hide sel atoms
> select subtract #1
Nothing selected
> select /A
783 atoms, 796 bonds, 107 residues, 1 model selected
> interfaces select /A & ::polymer_type>0 contacting /B & ::polymer_type>0
> areaCutoff 0
29 contacting residues
> show sel atoms
> select ((/A & ::polymer_type>0 ) & ((/B & ::polymer_type>0 ) :0 ) & ((/A & ::polymer_type>0 ) : select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> hide sel atoms
> select subtract #1
Nothing selected
> select ((/A & ::polymer_type>0 ) & ((/B & ::polymer_type>0 ) :0 ) & ((/A & ::polymer_type>0 ) : show sel atoms
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show Contacts
> contacts distanceOnly 3.4999999999999996 ignoreHiddenModels true
581 distances
> contacts distanceOnly 3.4999999999999996 intraMol false ignoreHiddenModels
> true
55 distances
> hbonds sel reveal true
42 hydrogen bonds found
> ~hbonds
> contacts distanceOnly 3.0 intraMol false ignoreHiddenModels true
15 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
55 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
55 distances
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_a53t/fold_2024_05_27_15_34_sq4_with_asyn25_65_a53t_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_a53t_model_0.cif #2
---
Chain | Description
A | .
B | .
> hide #!1 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color #2 bychain
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
45 distances
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select ((#2/A & ::polymer_type>0 ) & ((#2/B & ::polymer_type>0 ) :0 ) & ((#2/A & ::polymer_type>0 ) : show sel atoms
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #3
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #3
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select #1/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
Alignment identifier is 1/B
> select add #2
1079 atoms, 1092 bonds, 45 pseudobonds, 148 residues, 3 models selected
Alignment identifier is 1/B
Alignment identifier is 2/A
Alignment identifier is 2/B
> select add #1
2146 atoms, 2174 bonds, 100 pseudobonds, 294 residues, 4 models selected
> select subtract #1
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel red
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_a30p/fold_2024_05_27_15_34_sq4_with_asyn25_65_a30p_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_a30p_model_0.cif #4
---
Chain | Description
A | .
B | .
> hide #3 models
> hide #2 models
> color #4 byhetero
> color #4 bychain
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:4-5
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #2/B:4-5
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> color #4 red
> undo
> select add #4
1079 atoms, 1093 bonds, 148 residues, 2 models selected
> select add #2
2148 atoms, 2177 bonds, 45 pseudobonds, 294 residues, 3 models selected
> select subtract #2
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #4
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> select subtract #4
Nothing selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:3-4
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #2/B:3-40
279 atoms, 280 bonds, 38 residues, 1 model selected
> select add #4
1353 atoms, 1369 bonds, 185 residues, 2 models selected
Alignment identifier is 2/B
Alignment identifier is 4/A
Alignment identifier is 4/B
> select subtract #4
279 atoms, 280 bonds, 38 residues, 1 model selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> ui tool show Contacts
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #3
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> show #3 models
> show #2 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #2 models
> show #4 models
> select ((#4/A & ::polymer_type>0 ) & ((#4/B & ::polymer_type>0 ) :0 ) & ((#4/A & ::polymer_type>0 ) : show sel atoms
> set bgColor white
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting soft
> lighting simple
> select subtract #3
303 atoms, 288 bonds, 41 residues, 1 model selected
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel forest green
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> save /Users/siris/Desktop/image1.png supersample 3
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel black
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> transparentBackground true
> save /Users/siris/Desktop/Sq4_A30P.cxs
> hide #3 models
> hide #4 models
> show #2 models
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2
1081 atoms, 1095 bonds, 148 residues, 2 models selected
> select add #4
2148 atoms, 2177 bonds, 68 pseudobonds, 294 residues, 3 models selected
> select subtract #3
2148 atoms, 2177 bonds, 294 residues, 2 models selected
> select subtract #4
1074 atoms, 1088 bonds, 147 residues, 1 model selected
Alignment identifier is 2/A
Alignment identifier is 2/B
> select #2/B:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel black
> select add #2
1074 atoms, 1088 bonds, 147 residues, 1 model selected
> show #3 models
> hide #3 models
> ui tool show Contacts
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
45 distances
> show #3 models
> select subtract #2
Nothing selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> hide sel atoms
> select ((#2/A & ::polymer_type>0 ) & ((#2/B & ::polymer_type>0 ) :0 ) & ((#2/A & ::polymer_type>0 ) : show sel atoms
> select add #4
1308 atoms, 1313 bonds, 45 pseudobonds, 177 residues, 3 models selected
> select add #2
2148 atoms, 2177 bonds, 45 pseudobonds, 294 residues, 3 models selected
> select subtract #3
2148 atoms, 2177 bonds, 294 residues, 2 models selected
> select subtract #4
1074 atoms, 1088 bonds, 147 residues, 1 model selected
> select subtract #2
Nothing selected
> save /Users/siris/Desktop/Sq4_A53T.cxs
> save /Users/siris/Desktop/Sq4_A53T.tif width 974 height 776 supersample 3
> transparentBackground true
> show #!1 models
> hide #2 models
> hide #3 models
> select add #1
1072 atoms, 1086 bonds, 55 pseudobonds, 147 residues, 2 models selected
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
Alignment identifier is 1/A
Alignment identifier is 1/B
> select #1/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel black
> select add #1
1072 atoms, 1086 bonds, 55 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> save /Users/siris/Desktop/Sq4_E46K.tif width 974 height 776 supersample 3
> transparentBackground true
> save /Users/siris/Desktop/Sq4_E46K.cxs
> show #2 models
> show #3 models
> show #4 models
> close #2
> close
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq2_with_asyn25_65/fold_2024_05_27_15_34_sq2_with_asyn25_65_model_0.cif
Chain information for fold_2024_05_27_15_34_sq2_with_asyn25_65_model_0.cif #1
---
Chain | Description
A | .
B | .
> color bychain
> open /Users/siris/Desktop/Sq4_E46K.cxs
opened ChimeraX session
> open /Users/siris/Desktop/Sq4_A53T.cxs
opened ChimeraX session
> select #2/A:13-25,27-43,73-85,87-103
461 atoms, 466 bonds, 60 residues, 1 model selected
> select #2/A:69
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:69
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:87
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:87
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:89
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:88-89
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #2/A:91
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/A:90-91
11 atoms, 10 bonds, 2 residues, 1 model selected
> select #2/A:92
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:92
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:104-105
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #2/A:104-105
14 atoms, 13 bonds, 2 residues, 1 model selected
> show #4 models
> hide #3 models
> hide #2 models
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #3
45 pseudobonds, 1 model selected
> select subtract #3
Nothing selected
> show #3 models
> close
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65/fold_2024_05_27_15_34_sq4_with_asyn25_65_model_0.cif
Chain information for fold_2024_05_27_15_34_sq4_with_asyn25_65_model_0.cif #1
---
Chain | Description
A | .
B | .
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
> select /A:5
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:5-8
35 atoms, 35 bonds, 4 residues, 1 model selected
> select /A:4-8,64-67
75 atoms, 74 bonds, 9 residues, 1 model selected
> select /A:5
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:5-8
35 atoms, 35 bonds, 4 residues, 1 model selected
> color sel black
> select /A:12
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:12
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:12
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:13-14
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:13-14
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:12
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:12-13
13 atoms, 12 bonds, 2 residues, 1 model selected
> color sel black
> select /A:13-25,27-43,73-85,87-103
461 atoms, 466 bonds, 60 residues, 1 model selected
> select /A:16
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:16
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel black
> select /A:19
11 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:19-20
19 atoms, 19 bonds, 2 residues, 1 model selected
> color sel black
> select /A:23
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:23
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel black
> select /A:34
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:34
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel black
> select /A:65
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /A:65-68
30 atoms, 29 bonds, 4 residues, 1 model selected
> color sel black
> select /A:72
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:72-73
15 atoms, 15 bonds, 2 residues, 1 model selected
> color sel black
> select /A:76
14 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:76
14 atoms, 15 bonds, 1 residue, 1 model selected
> color sel black
> select /A:79
11 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:79-80
25 atoms, 27 bonds, 2 residues, 1 model selected
> color sel black
> select /A:83
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:83
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel black
> select /A:13-25,27-43,73-85,87-103
461 atoms, 466 bonds, 60 residues, 1 model selected
> select /A:94
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:94
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:13-25,27-43,73-85,87-103
461 atoms, 466 bonds, 60 residues, 1 model selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> select /A:14
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:13-14
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:4-8,64-67
75 atoms, 74 bonds, 9 residues, 1 model selected
> select /A:14
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:13-14
13 atoms, 12 bonds, 2 residues, 1 model selected
> select /A:13
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:13
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel bychain
> select /A:16
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:16
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel bychain
> select /A:76
14 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:76
14 atoms, 15 bonds, 1 residue, 1 model selected
> color sel bychain
> select /A:79-80
25 atoms, 27 bonds, 2 residues, 1 model selected
> select /A:79-80
25 atoms, 27 bonds, 2 residues, 1 model selected
> select /A:79
11 atoms, 11 bonds, 1 residue, 1 model selected
> select /A:79
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel bychain
> select /A:83
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:83
8 atoms, 7 bonds, 1 residue, 1 model selected
> color sel bychain
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts intraMol false ignoreHiddenModels true
99 contacts
> select ((/A & ::polymer_type>0 ) & ((/B & ::polymer_type>0 ) :0 ) & ((/A & ::polymer_type>0 ) : show sel atoms
> select add #1
1072 atoms, 1086 bonds, 99 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> save /Users/siris/Desktop/Sq4_blackinmutants.cxs
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select /B:29-30
14 atoms, 13 bonds, 2 residues, 1 model selected
> select /B:29-30
14 atoms, 13 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:10-19,22-31
136 atoms, 136 bonds, 20 residues, 1 model selected
> select add #1
1072 atoms, 1086 bonds, 99 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> hide #!1 models
> show #!1 models
> select add #1
1072 atoms, 1086 bonds, 99 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> select add #1
1072 atoms, 1086 bonds, 99 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> show target m
> select add #1
1072 atoms, 1086 bonds, 99 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> close
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65/fold_2024_05_27_15_34_sq4_with_asyn25_65_model_0.cif
Chain information for fold_2024_05_27_15_34_sq4_with_asyn25_65_model_0.cif #1
---
Chain | Description
A | .
B | .
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:1
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B
289 atoms, 290 bonds, 40 residues, 1 model selected
> close
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65/fold_2024_05_27_15_34_sq4_with_asyn25_65_model_1.cif
Chain information for fold_2024_05_27_15_34_sq4_with_asyn25_65_model_1.cif #1
---
Chain | Description
A | .
B | .
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
> select /B:1-2
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:1-22
155 atoms, 155 bonds, 22 residues, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> show sel atoms
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
Unsupported scale factor (0.000000) detected on Display1
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/siris/Desktop/Sq4_A53T.cxs
Log from Tue Mar 25 15:43:05 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_e46k/fold_2024_05_27_15_34_sq4_with_asyn25_65_e46k_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_e46k_model_0.cif #1
---
Chain | Description
A | .
B | .
> color bychain
Alignment identifier is 1/A
Alignment identifier is 1/B
> select /B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel red
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:28-29
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:27-28
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:27-28
12 atoms, 11 bonds, 2 residues, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:28
5 atoms, 4 bonds, 1 residue, 1 model selected
> hide #1 models
> show #1 models
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> interfaces ~solvent
1 buried areas: A B 1157
> show sel atoms
> hbonds sel reveal true
48 hydrogen bonds found
> select add #1
1072 atoms, 1086 bonds, 48 pseudobonds, 147 residues, 2 models selected
> select subtract #1
Nothing selected
> ~hbonds
[Repeated 2 time(s)]
> hbonds sel reveal true
48 hydrogen bonds found
> select add #1
1072 atoms, 1086 bonds, 48 pseudobonds, 147 residues, 2 models selected
> ~hbonds
> select subtract #1
Nothing selected
> hbonds sel reveal true
33 hydrogen bonds found
> ~hbonds
> hide sel atoms
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> hide sel atoms
> select subtract #1
Nothing selected
> select /A
783 atoms, 796 bonds, 107 residues, 1 model selected
> interfaces select /A & ::polymer_type>0 contacting /B & ::polymer_type>0
> areaCutoff 0
29 contacting residues
> show sel atoms
> select ((/A & ::polymer_type>0 ) & ((/B & ::polymer_type>0 ) :<3.5)) | ((/B & ::polymer_type>0 ) & ((/A & ::polymer_type>0 ) :<3.5))
275 atoms, 267 bonds, 37 residues, 1 model selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
1072 atoms, 1086 bonds, 147 residues, 1 model selected
> hide sel atoms
> select subtract #1
Nothing selected
> select ((/A & ::polymer_type>0 ) & ((/B & ::polymer_type>0 ) :<3.5)) | ((/B & ::polymer_type>0 ) & ((/A & ::polymer_type>0 ) :<3.5))
275 atoms, 267 bonds, 37 residues, 1 model selected
> show sel atoms
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show Contacts
> contacts distanceOnly 3.4999999999999996 ignoreHiddenModels true
581 distances
> contacts distanceOnly 3.4999999999999996 intraMol false ignoreHiddenModels
> true
55 distances
> hbonds sel reveal true
42 hydrogen bonds found
> ~hbonds
> contacts distanceOnly 3.0 intraMol false ignoreHiddenModels true
15 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
55 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
55 distances
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_a53t/fold_2024_05_27_15_34_sq4_with_asyn25_65_a53t_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_a53t_model_0.cif #2
---
Chain | Description
A | .
B | .
> hide #!1 models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color #2 bychain
> ui tool show Contacts
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
45 distances
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> select ((#2/A & ::polymer_type>0 ) & ((#2/B & ::polymer_type>0 ) :<3.5)) | ((#2/B & ::polymer_type>0 ) & ((#2/A & ::polymer_type>0 ) :<3.5))
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> show sel atoms
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #3
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #3
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> select subtract #3
234 atoms, 224 bonds, 30 residues, 1 model selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select #1/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
Alignment identifier is 1/B
[Repeated 1 time(s)]
> select add #2
1079 atoms, 1092 bonds, 45 pseudobonds, 148 residues, 3 models selected
Alignment identifier is 1/B
Alignment identifier is 2/A
Alignment identifier is 2/B
> select add #1
2146 atoms, 2174 bonds, 100 pseudobonds, 294 residues, 4 models selected
> select subtract #1
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/B:21
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel red
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> open
> /Users/siris/Downloads/folds_2025_03_25_12_26/2024_05_27_15_34_sq4_with_asyn25_65_a30p/fold_2024_05_27_15_34_sq4_with_asyn25_65_a30p_model_0.cif
Chain information for
fold_2024_05_27_15_34_sq4_with_asyn25_65_a30p_model_0.cif #4
---
Chain | Description
A | .
B | .
> hide #3 models
> hide #2 models
> color #4 byhetero
> color #4 bychain
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:4-5
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #2/B:4-5
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> color #4 red
> undo
> select add #4
1079 atoms, 1093 bonds, 148 residues, 2 models selected
> select add #2
2148 atoms, 2177 bonds, 45 pseudobonds, 294 residues, 3 models selected
> select subtract #2
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #2/B:5
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> select subtract #2
Nothing selected
> select add #4
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> select subtract #4
Nothing selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:5-6
9 atoms, 8 bonds, 2 residues, 1 model selected
> select #2/B:3-4
14 atoms, 13 bonds, 2 residues, 1 model selected
> select #2/B:3-40
279 atoms, 280 bonds, 38 residues, 1 model selected
> select add #4
1353 atoms, 1369 bonds, 185 residues, 2 models selected
Alignment identifier is 2/B
Alignment identifier is 4/A
Alignment identifier is 4/B
> select subtract #4
279 atoms, 280 bonds, 38 residues, 1 model selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> ui tool show Contacts
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #3
1074 atoms, 1089 bonds, 147 residues, 1 model selected
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
68 distances
> show #3 models
> show #2 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #2 models
> show #4 models
> select ((#4/A & ::polymer_type>0 ) & ((#4/B & ::polymer_type>0 ) :<3.5)) | ((#4/B & ::polymer_type>0 ) & ((#4/A & ::polymer_type>0 ) :<3.5))
303 atoms, 288 bonds, 68 pseudobonds, 41 residues, 2 models selected
> show sel atoms
> set bgColor white
> lighting simple
> lighting soft
> lighting simple
> lighting full
> lighting soft
> lighting simple
> select subtract #3
303 atoms, 288 bonds, 41 residues, 1 model selected
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel forest green
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> save /Users/siris/Desktop/image1.png supersample 3
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel black
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> select add #4
1074 atoms, 1089 bonds, 68 pseudobonds, 147 residues, 2 models selected
> select subtract #4
Nothing selected
> save /Users/siris/Desktop/Sq4_A30P.tif width 974 height 776 supersample 3
> transparentBackground true
> save /Users/siris/Desktop/Sq4_A30P.cxs
> hide #3 models
> hide #4 models
> show #2 models
> select #4/B:5
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2
1081 atoms, 1095 bonds, 148 residues, 2 models selected
> select add #4
2148 atoms, 2177 bonds, 68 pseudobonds, 294 residues, 3 models selected
> select subtract #3
2148 atoms, 2177 bonds, 294 residues, 2 models selected
> select subtract #4
1074 atoms, 1088 bonds, 147 residues, 1 model selected
Alignment identifier is 2/A
Alignment identifier is 2/B
> select #2/B:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:34
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:29
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #2/B:28
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel black
> select add #2
1074 atoms, 1088 bonds, 147 residues, 1 model selected
> show #3 models
> hide #3 models
> ui tool show Contacts
> contacts distanceOnly 3.5 intraMol false ignoreHiddenModels true
45 distances
> show #3 models
> select subtract #2
Nothing selected
> select add #2
1074 atoms, 1088 bonds, 45 pseudobonds, 147 residues, 2 models selected
> hide sel atoms
> select ((#2/A & ::polymer_type>0 ) & ((#2/B & ::polymer_type>0 ) :<3.5)) | ((#2/B & ::polymer_type>0 ) & ((#2/A & ::polymer_type>0 ) :<3.5))
234 atoms, 224 bonds, 45 pseudobonds, 30 residues, 2 models selected
> show sel atoms
> select add #4
1308 atoms, 1313 bonds, 45 pseudobonds, 177 residues, 3 models selected
> select add #2
2148 atoms, 2177 bonds, 45 pseudobonds, 294 residues, 3 models selected
> select subtract #3
2148 atoms, 2177 bonds, 294 residues, 2 models selected
> select subtract #4
1074 atoms, 1088 bonds, 147 residues, 1 model selected
> select subtract #2
Nothing selected
> save /Users/siris/Desktop/Sq4_A53T.cxs
——— End of log from Tue Mar 25 15:43:05 2025 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 6723.140.2
OS Loader Version: 6723.140.2
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 216 days 21:52
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
E2411:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 7 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 7 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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