![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#17172 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.2-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff8481e7b00 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, lxml._elementpath, lxml.etree, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, psutil._psutil_osx, psutil._psutil_posix, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PIL._webp, chimerax.atom_search.ast, chimerax.chem_group._chem_group, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize (total: 65)
{"app_name":"ChimeraX","timestamp":"2025-03-24 09:42:01.00 +0100","app_version":"1.8.0","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.8.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.3.2 (24D81)","roots_installed":0,"name":"ChimeraX","incident_id":"A085D66B-232F-4CF6-9DDA-1889DCAAB909"}
{
"uptime" : 240000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 1003,
"osVersion" : {
"train" : "macOS 15.3.2",
"build" : "24D81",
"releaseType" : "User"
},
"captureTime" : "2025-03-24 09:41:52.6629 +0100",
"codeSigningMonitor" : 0,
"incident" : "A085D66B-232F-4CF6-9DDA-1889DCAAB909",
"pid" : 9415,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-03-23 11:35:14.0950 +0100",
"procStartAbsTime" : 194046510541388,
"procExitAbsTime" : 241616368391841,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"C4027B15-248B-5659-BACC-6FB29543A4B7","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "8D528D7E-5C72-169F-357F-E09EC31F9564",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"bootSessionUUID" : "ECAC3F3E-CD7E-4414-A068-42C10232CC05",
"wakeTime" : 14,
"bridgeVersion" : {"build":"22P3060","train":"9.3"},
"sleepWakeUUID" : "BAD323D9-2941-45B6-94F8-A43071712230",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4390133760\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 105ac2000-105ac6000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":9415},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\nVM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4390133760\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 105ac2000-105ac6000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[41,7,197,252,41,71,32,72,131,199,64,72,131,234,64,119,237,197,252,17,4,23,197,252,17,68,23,32,197,248,119,93,195,72,137,52,23,72,131,234,8,115,246,72,131,194,8,116,11,64,136,116,23,255,72,131,234,1,117,245,93,195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,85,72,137,229,72,137,249,72,137,250,72,131,231,240,102,15,239,192,102,15,116,7,102,15,215,240,72,131,225,15,72,131,200,255,72,211,224,33,198,116,23,15,188,198,72,41,215,72,1,248,93,195,102,46,15,31,132,0,0,0,0,0,102,144,72,131,199,16,102,15,239,192,102,15,116,7,102,15,215,240,133,246,116,236,235,211,101,72,139,12,37,24,0,0,0,65,137,200,49,192,240,76,15,177,7,15,133,241,28,0,0,233,0,0],"offset":96}},"frames":[{"imageOffset":31826,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":165},{"imageOffset":24453,"symbol":"pthread_kill","symbolLocation":262,"imageIndex":166},{"imageOffset":284828,"symbol":"raise","symbolLocation":24,"imageIndex":167},{"imageOffset":2540852,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":1},{"imageOffset":15901,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":168},{"imageOffset":0,"imageIndex":169},{"imageOffset":38708055,"imageIndex":56},{"imageOffset":38399649,"imageIndex":56},{"imageOffset":36937448,"imageIndex":56},{"imageOffset":36958840,"imageIndex":56},{"imageOffset":108068521,"imageIndex":56},{"imageOffset":108093982,"imageIndex":56},{"imageOffset":82367923,"imageIndex":56},{"imageOffset":50359862,"imageIndex":56},{"imageOffset":50343563,"imageIndex":56},{"imageOffset":79630,"symbol":"displayConfigFinalizedProc","symbolLocation":253,"imageIndex":170},{"imageOffset":47696,"symbol":"CGSPostLocalNotification","symbolLocation":168,"imageIndex":170},{"imageOffset":46498,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":96,"imageIndex":170},{"imageOffset":4050282,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":196,"imageIndex":170},{"imageOffset":4050072,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":18,"imageIndex":170},{"imageOffset":9301,"symbol":"_dispatch_call_block_and_release","symbolLocation":12,"imageIndex":171},{"imageOffset":14306,"symbol":"_dispatch_client_callout","symbolLocation":8,"imageIndex":171},{"imageOffset":65091,"symbol":"_dispatch_main_queue_drain","symbolLocation":999,"imageIndex":171},{"imageOffset":64078,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":31,"imageIndex":171},{"imageOffset":759016,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":9,"imageIndex":172},{"imageOffset":502893,"symbol":"__CFRunLoopRun","symbolLocation":2511,"imageIndex":172},{"imageOffset":498798,"symbol":"CFRunLoopRunSpecific","symbolLocation":550,"imageIndex":172},{"imageOffset":979987,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":173},{"imageOffset":1002851,"symbol":"ReceiveNextEventCommon","symbolLocation":501,"imageIndex":173},{"imageOffset":1003561,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":66,"imageIndex":173},{"imageOffset":265011,"symbol":"_DPSNextEvent","symbolLocation":902,"imageIndex":174},{"imageOffset":11098296,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1290,"imageIndex":174},{"imageOffset":203433,"symbol":"-[NSApplication run]","symbolLocation":610,"imageIndex":174},{"imageOffset":93965,"imageIndex":69},{"imageOffset":583190,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":45},{"imageOffset":545047,"symbol":"QCoreApplication::exec()","symbolLocation":119,"imageIndex":45},{"imageOffset":2261324,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":92,"imageIndex":48},{"imageOffset":1044954,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":1},{"imageOffset":630769,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":1},{"imageOffset":1868407,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61255,"imageIndex":1},{"imageOffset":1802218,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":1},{"imageOffset":1779827,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":1},{"imageOffset":1047348,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":1},{"imageOffset":1868159,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":61007,"imageIndex":1},{"imageOffset":1892992,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":1},{"imageOffset":2512477,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":1},{"imageOffset":2511137,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":1},{"imageOffset":2515163,"symbol":"pymain_main","symbolLocation":43,"imageIndex":1},{"imageOffset":2515114,"symbol":"Py_Main","symbolLocation":42,"imageIndex":1},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":0},{"imageOffset":25293,"symbol":"start","symbolLocation":1805,"imageIndex":175}],"id":3064322,"triggered":true,"threadState":{"r13":{"value":140196161170689},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":259},"rsi":{"value":11},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140704338574080,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":11},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703217060946,"matchesCrashFrame":1},"rbp":{"value":140196435487248},"rsp":{"value":140196435487208},"r12":{"value":4408773744,"symbolLocation":0,"symbol":"faulthandler_handlers"},"rcx":{"value":140196435487208},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":3064700,"name":"ThreadPoolServiceThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140196595918592},"rsi":{"value":0},"r8":{"value":4},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140196565428960},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145346547008},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703217072406},"rbp":{"value":123145346546992},"rsp":{"value":123145346546920},"r12":{"value":140196595918736},"rcx":{"value":123145346546920},"flavor":"x86_THREAD_STATE","rdi":{"value":11}},"frames":[{"imageOffset":43286,"symbol":"kevent64","symbolLocation":10,"imageIndex":165},{"imageOffset":75593716,"imageIndex":56},{"imageOffset":75593183,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75245773,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064701,"name":"ThreadPoolForegroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":273791280218112},"r9":{"value":273791280218112},"r15":{"value":273791280218112},"rbx":{"value":123145354947888},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145354947216},"rsp":{"value":123145354947112},"r12":{"value":33000},"rcx":{"value":123145354947112},"flavor":"x86_THREAD_STATE","rdi":{"value":123145354947888}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75297738,"imageIndex":56},{"imageOffset":75295997,"imageIndex":56},{"imageOffset":75295727,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064702,"name":"ThreadPoolBackgroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":200124001157120},"r9":{"value":200124001157120},"r15":{"value":200124001157120},"rbx":{"value":123145363348784},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145363348112},"rsp":{"value":123145363348008},"r12":{"value":33000},"rcx":{"value":123145363348008},"flavor":"x86_THREAD_STATE","rdi":{"value":123145363348784}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75297738,"imageIndex":56},{"imageOffset":75295853,"imageIndex":56},{"imageOffset":75295764,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064703,"name":"Chrome_IOThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140196595919616},"rsi":{"value":0},"r8":{"value":3},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140196433994960},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145371749664},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703217072406},"rbp":{"value":123145371749648},"rsp":{"value":123145371749576},"r12":{"value":140196595919728},"rcx":{"value":123145371749576},"flavor":"x86_THREAD_STATE","rdi":{"value":12}},"frames":[{"imageOffset":43286,"symbol":"kevent64","symbolLocation":10,"imageIndex":165},{"imageOffset":75593716,"imageIndex":56},{"imageOffset":75593183,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":48358146,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064704,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":262796163940352},"r9":{"value":262796163940352},"r15":{"value":262796163940352},"rbx":{"value":123145380150336},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145380149664},"rsp":{"value":123145380149560},"r12":{"value":0},"rcx":{"value":123145380149560},"flavor":"x86_THREAD_STATE","rdi":{"value":123145380150336}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064711,"name":"Chrome_InProcGpuThread","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":251801047662592},"r9":{"value":251801047662592},"r15":{"value":251801047662592},"rbx":{"value":123145414290496},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145414289824},"rsp":{"value":123145414289720},"r12":{"value":0},"rcx":{"value":123145414289720},"flavor":"x86_THREAD_STATE","rdi":{"value":123145414290496}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064712,"name":"Chrome_ChildIOThread","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140196594026240},"rsi":{"value":0},"r8":{"value":1},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140196594026576},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145422691616},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703217072406},"rbp":{"value":123145422691600},"rsp":{"value":123145422691528},"r12":{"value":140196594026256},"rcx":{"value":123145422691528},"flavor":"x86_THREAD_STATE","rdi":{"value":21}},"frames":[{"imageOffset":43286,"symbol":"kevent64","symbolLocation":10,"imageIndex":165},{"imageOffset":75593716,"imageIndex":56},{"imageOffset":75593183,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":122838530,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064713,"name":"CompositorTileWorker1","threadState":{"r13":{"value":2203318223616},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145431093248},"rsi":{"value":2203318223616},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":512},"r10":{"value":0},"r9":{"value":161},"r15":{"value":512},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145431092944},"rsp":{"value":123145431092792},"r12":{"value":0},"rcx":{"value":123145431092792},"flavor":"x86_THREAD_STATE","rdi":{"value":140196565447384}},"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":75462980,"imageIndex":56},{"imageOffset":113394117,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064714,"name":"ThreadPoolSingleThreadSharedForeground0","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":247403001151488},"r9":{"value":247403001151488},"r15":{"value":247403001151488},"rbx":{"value":123145439493424},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145439492752},"rsp":{"value":123145439492648},"r12":{"value":0},"rcx":{"value":123145439492648},"flavor":"x86_THREAD_STATE","rdi":{"value":123145439493424}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75296343,"imageIndex":56},{"imageOffset":75296045,"imageIndex":56},{"imageOffset":75295784,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064715,"name":"VizCompositorThread","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":282587373240320},"r9":{"value":282587373240320},"r15":{"value":282587373240320},"rbx":{"value":123145447894096},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145447893424},"rsp":{"value":123145447893320},"r12":{"value":17},"rcx":{"value":123145447893320},"flavor":"x86_THREAD_STATE","rdi":{"value":123145447894096}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":74666082,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064716,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":368349280206848},"r9":{"value":368349280206848},"r15":{"value":368349280206848},"rbx":{"value":123145456294976},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145456294304},"rsp":{"value":123145456294200},"r12":{"value":0},"rcx":{"value":123145456294200},"flavor":"x86_THREAD_STATE","rdi":{"value":123145456294976}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064717,"name":"NetworkService","threadState":{"r13":{"value":12297829382473034411},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":140196597584128},"rsi":{"value":0},"r8":{"value":2},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":140196490596656},"r9":{"value":0},"r15":{"value":0},"rbx":{"value":123145464696160},"trap":{"value":133},"err":{"value":33554801},"r11":{"value":582},"rip":{"value":140703217072406},"rbp":{"value":123145464696144},"rsp":{"value":123145464696072},"r12":{"value":140196597584352},"rcx":{"value":123145464696072},"flavor":"x86_THREAD_STATE","rdi":{"value":22}},"frames":[{"imageOffset":43286,"symbol":"kevent64","symbolLocation":10,"imageIndex":165},{"imageOffset":75593716,"imageIndex":56},{"imageOffset":75593183,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064718,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":285885908123648},"r9":{"value":285885908123648},"r15":{"value":285885908123648},"rbx":{"value":123145473096768},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145473096096},"rsp":{"value":123145473095992},"r12":{"value":0},"rcx":{"value":123145473095992},"flavor":"x86_THREAD_STATE","rdi":{"value":123145473096768}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064719,"name":"ThreadPoolSingleThreadForegroundBlocking1","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":289184443006976},"r9":{"value":289184443006976},"r15":{"value":289184443006976},"rbx":{"value":123145481497904},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145481497232},"rsp":{"value":123145481497128},"r12":{"value":0},"rcx":{"value":123145481497128},"flavor":"x86_THREAD_STATE","rdi":{"value":123145481497904}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75297738,"imageIndex":56},{"imageOffset":75296093,"imageIndex":56},{"imageOffset":75295774,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064742,"name":"NetworkConfigWatcher","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":308975652306944},"r9":{"value":308975652306944},"r15":{"value":308975652306944},"rbx":{"value":123145492044864},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145492044192},"rsp":{"value":123145492044088},"r12":{"value":0},"rcx":{"value":123145492044088},"flavor":"x86_THREAD_STATE","rdi":{"value":123145492044864}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064828,"name":"com.apple.NSEventThread","threadState":{"r13":{"value":21592279046},"rax":{"value":268451845},"rflags":{"value":518},"cpu":{"value":0},"r14":{"value":2},"rsi":{"value":21592279046},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8589934592},"r10":{"value":511285791817728},"r9":{"value":511285791817728},"r15":{"value":511285791817728},"rbx":{"value":123145335996528},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":518},"rip":{"value":140703217032974},"rbp":{"value":123145335996368},"rsp":{"value":123145335996264},"r12":{"value":4294967295},"rcx":{"value":123145335996264},"flavor":"x86_THREAD_STATE","rdi":{"value":123145335996528}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":507362,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":143,"imageIndex":172},{"imageOffset":501775,"symbol":"__CFRunLoopRun","symbolLocation":1393,"imageIndex":172},{"imageOffset":498798,"symbol":"CFRunLoopRunSpecific","symbolLocation":550,"imageIndex":172},{"imageOffset":1663085,"symbol":"_NSEventThread","symbolLocation":127,"imageIndex":174},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064836,"name":"MemoryInfra","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":485997024378880},"r9":{"value":485997024378880},"r15":{"value":485997024378880},"rbx":{"value":123145532611648},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145532610976},"rsp":{"value":123145532610872},"r12":{"value":0},"rcx":{"value":123145532610872},"flavor":"x86_THREAD_STATE","rdi":{"value":123145532611648}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75039155,"imageIndex":56},{"imageOffset":74666185,"imageIndex":56},{"imageOffset":75194449,"imageIndex":56},{"imageOffset":74879192,"imageIndex":56},{"imageOffset":75351720,"imageIndex":56},{"imageOffset":75352126,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064837,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","threadState":{"r13":{"value":17179869186},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869186},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":8877697400832},"r9":{"value":8877697400832},"r15":{"value":8877697400832},"rbx":{"value":123145541012784},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145541012112},"rsp":{"value":123145541012008},"r12":{"value":0},"rcx":{"value":123145541012008},"flavor":"x86_THREAD_STATE","rdi":{"value":123145541012784}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75296343,"imageIndex":56},{"imageOffset":75295901,"imageIndex":56},{"imageOffset":75295804,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3064877,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":34084860473088},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145332244480},"rsi":{"value":34084860473088},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":7936},"r10":{"value":0},"r9":{"value":160},"r15":{"value":7936},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145332244256},"rsp":{"value":123145332244104},"r12":{"value":0},"rcx":{"value":123145332244104},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064878,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":36283883729152},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145332781056},"rsi":{"value":36283883729152},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8448},"r10":{"value":0},"r9":{"value":160},"r15":{"value":8448},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145332780832},"rsp":{"value":123145332780680},"r12":{"value":0},"rcx":{"value":123145332780680},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064879,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":37383395357184},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145333317632},"rsi":{"value":37383395357184},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8704},"r10":{"value":0},"r9":{"value":160},"r15":{"value":8704},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145333317408},"rsp":{"value":123145333317256},"r12":{"value":0},"rcx":{"value":123145333317256},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064880,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":38482906985216},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145333854208},"rsi":{"value":38482906985216},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8960},"r10":{"value":0},"r9":{"value":160},"r15":{"value":8960},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145333853984},"rsp":{"value":123145333853832},"r12":{"value":0},"rcx":{"value":123145333853832},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064881,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":39582418613248},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145334390784},"rsi":{"value":39582418613248},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":9216},"r10":{"value":0},"r9":{"value":160},"r15":{"value":9216},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145334390560},"rsp":{"value":123145334390408},"r12":{"value":0},"rcx":{"value":123145334390408},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064882,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":40681930241280},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145334927360},"rsi":{"value":40681930241280},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":9472},"r10":{"value":0},"r9":{"value":160},"r15":{"value":9472},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145334927136},"rsp":{"value":123145334926984},"r12":{"value":0},"rcx":{"value":123145334926984},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064883,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":41781441869312},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145335463936},"rsi":{"value":41781441869312},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":9728},"r10":{"value":0},"r9":{"value":160},"r15":{"value":9728},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145335463712},"rsp":{"value":123145335463560},"r12":{"value":0},"rcx":{"value":123145335463560},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064884,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":25288767448832},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145542623232},"rsi":{"value":25288767448832},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":5888},"r10":{"value":0},"r9":{"value":160},"r15":{"value":5888},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145542623008},"rsp":{"value":123145542622856},"r12":{"value":0},"rcx":{"value":123145542622856},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064885,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":26388279076864},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145543159808},"rsi":{"value":26388279076864},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":6144},"r10":{"value":0},"r9":{"value":160},"r15":{"value":6144},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145543159584},"rsp":{"value":123145543159432},"r12":{"value":0},"rcx":{"value":123145543159432},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064886,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":27487790704896},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145543696384},"rsi":{"value":27487790704896},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":6400},"r10":{"value":0},"r9":{"value":160},"r15":{"value":6400},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145543696160},"rsp":{"value":123145543696008},"r12":{"value":0},"rcx":{"value":123145543696008},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064887,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":28587302332928},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145544232960},"rsi":{"value":28587302332928},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":6656},"r10":{"value":0},"r9":{"value":160},"r15":{"value":6656},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145544232736},"rsp":{"value":123145544232584},"r12":{"value":0},"rcx":{"value":123145544232584},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064888,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":29686813960960},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145544769536},"rsi":{"value":29686813960960},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":6912},"r10":{"value":0},"r9":{"value":160},"r15":{"value":6912},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145544769312},"rsp":{"value":123145544769160},"r12":{"value":0},"rcx":{"value":123145544769160},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064889,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":30786325588992},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145545306112},"rsi":{"value":30786325588992},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":7168},"r10":{"value":0},"r9":{"value":160},"r15":{"value":7168},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145545305888},"rsp":{"value":123145545305736},"r12":{"value":0},"rcx":{"value":123145545305736},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064890,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":31885837217024},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145545842688},"rsi":{"value":31885837217024},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":7424},"r10":{"value":0},"r9":{"value":160},"r15":{"value":7424},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145545842464},"rsp":{"value":123145545842312},"r12":{"value":0},"rcx":{"value":123145545842312},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064891,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":32985348845056},"rax":{"value":4},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145546379264},"rsi":{"value":32985348845056},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":7680},"r10":{"value":0},"r9":{"value":160},"r15":{"value":7680},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145546379040},"rsp":{"value":123145546378888},"r12":{"value":0},"rcx":{"value":123145546378888},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3064892,"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":113156,"symbol":"std::__1::condition_variable::wait(std::__1::unique_lock&)","symbolLocation":18,"imageIndex":176},{"imageOffset":108261782,"imageIndex":56},{"imageOffset":108267659,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}],"threadState":{"r13":{"value":35184372101120},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145546915840},"rsi":{"value":35184372101120},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":8192},"r10":{"value":0},"r9":{"value":160},"r15":{"value":8192},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145546915616},"rsp":{"value":123145546915464},"r12":{"value":0},"rcx":{"value":123145546915464},"flavor":"x86_THREAD_STATE","rdi":{"value":140196597332352}}},{"id":3776361,"name":"QFileInfoGatherer","threadState":{"r13":{"value":9899899619840},"rax":{"value":260},"rflags":{"value":583},"cpu":{"value":0},"r14":{"value":123145391235072},"rsi":{"value":9899899619840},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":2304},"r10":{"value":0},"r9":{"value":160},"r15":{"value":2304},"rbx":{"value":22},"trap":{"value":133},"err":{"value":33554737},"r11":{"value":582},"rip":{"value":140703217044138},"rbp":{"value":123145391234624},"rsp":{"value":123145391234472},"r12":{"value":0},"rcx":{"value":123145391234472},"flavor":"x86_THREAD_STATE","rdi":{"value":140193102714592}},"frames":[{"imageOffset":15018,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":165},{"imageOffset":26536,"symbol":"_pthread_cond_wait","symbolLocation":1193,"imageIndex":166},{"imageOffset":2231675,"imageIndex":45},{"imageOffset":2231525,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":85,"imageIndex":45},{"imageOffset":4704546,"symbol":"QFileInfoGatherer::run()","symbolLocation":146,"imageIndex":50},{"imageOffset":2191737,"imageIndex":45},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3787316,"frames":[{"imageOffset":7116,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":166}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":0},"rsi":{"value":313383},"r8":{"value":409602},"cr2":{"value":0},"rdx":{"value":123145336012800},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":0},"rbx":{"value":123145336537088},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703217281996},"rbp":{"value":0},"rsp":{"value":123145336537088},"r12":{"value":0},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145336537088}}},{"id":3788501,"name":"ThreadPoolForegroundWorker","threadState":{"r13":{"value":17179869442},"rax":{"value":268451845},"rflags":{"value":514},"cpu":{"value":0},"r14":{"value":32},"rsi":{"value":17179869442},"r8":{"value":0},"cr2":{"value":0},"rdx":{"value":0},"r10":{"value":171261820928000},"r9":{"value":171261820928000},"r15":{"value":171261820928000},"rbx":{"value":123145388551472},"trap":{"value":133},"err":{"value":16777263},"r11":{"value":514},"rip":{"value":140703217032974},"rbp":{"value":123145388550800},"rsp":{"value":123145388550696},"r12":{"value":33000},"rcx":{"value":123145388550696},"flavor":"x86_THREAD_STATE","rdi":{"value":123145388551472}},"frames":[{"imageOffset":3854,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":165},{"imageOffset":62970,"symbol":"mach_msg2_internal","symbolLocation":84,"imageIndex":165},{"imageOffset":32790,"symbol":"mach_msg_overwrite","symbolLocation":649,"imageIndex":165},{"imageOffset":4607,"symbol":"mach_msg","symbolLocation":19,"imageIndex":165},{"imageOffset":75634614,"imageIndex":56},{"imageOffset":75039302,"imageIndex":56},{"imageOffset":75293834,"imageIndex":56},{"imageOffset":75297738,"imageIndex":56},{"imageOffset":75295997,"imageIndex":56},{"imageOffset":75295727,"imageIndex":56},{"imageOffset":75466040,"imageIndex":56},{"imageOffset":25171,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":166},{"imageOffset":7151,"symbol":"thread_start","symbolLocation":15,"imageIndex":166}]},{"id":3788524,"frames":[{"imageOffset":7116,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":166}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":304443},"r8":{"value":409602},"cr2":{"value":0},"rdx":{"value":123145337085952},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145337609088},"rbx":{"value":123145337610240},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703217281996},"rbp":{"value":0},"rsp":{"value":123145337610240},"r12":{"value":1982472},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145337610240}}},{"id":3789582,"frames":[{"imageOffset":7116,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":166}],"threadState":{"r13":{"value":0},"rax":{"value":33554800},"rflags":{"value":512},"cpu":{"value":0},"r14":{"value":1},"rsi":{"value":202783},"r8":{"value":409602},"cr2":{"value":0},"rdx":{"value":123145336549376},"r10":{"value":0},"r9":{"value":18446744073709551615},"r15":{"value":123145337072504},"rbx":{"value":123145337073664},"trap":{"value":133},"err":{"value":33554800},"r11":{"value":582},"rip":{"value":140703217281996},"rbp":{"value":0},"rsp":{"value":123145337073664},"r12":{"value":5193730},"rcx":{"value":0},"flavor":"x86_THREAD_STATE","rdi":{"value":123145337073664}}}],
"usedImages" : [
{
"source" : "P",
"arch" : "x86_64",
"base" : 4390133760,
"CFBundleShortVersionString" : "1.8.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.8.0.0"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4404424704,
"CFBundleShortVersionString" : "3.11.4, (c) 2001-2023 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 4030464,
"uuid" : "514efc82-c424-3863-84a8-e24ffd50343d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
"name" : "Python",
"CFBundleVersion" : "3.11.4"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4392730624,
"size" : 49152,
"uuid" : "c4d4107c-7508-3d61-88f1-4f1a33945090",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so",
"name" : "math.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4392476672,
"size" : 65536,
"uuid" : "ce1cdda7-c310-3834-8656-4829f8b0fa2a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so",
"name" : "_datetime.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4392624128,
"size" : 16384,
"uuid" : "52112d00-a676-3fba-b4d8-69e98fe5e2c3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so",
"name" : "_typing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396208128,
"size" : 32768,
"uuid" : "6c0e3849-f845-3996-a69e-e956c62499ff",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so",
"name" : "zlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396306432,
"size" : 16384,
"uuid" : "4921b552-b90a-39c6-b791-14028366f5a0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so",
"name" : "_bz2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396949504,
"size" : 196608,
"uuid" : "0fa75f51-66bf-3a60-a393-65ceea03012e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so",
"name" : "_lzma.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396371968,
"size" : 16384,
"uuid" : "cc52d89b-b174-3a9a-94ae-0c556ec7b21b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so",
"name" : "_bisect.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396437504,
"size" : 16384,
"uuid" : "de8dfc82-ec28-378b-b945-07e7671a35b1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so",
"name" : "_random.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396503040,
"size" : 32768,
"uuid" : "4e6494eb-704b-3e1a-9d97-751ef9b2d06a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so",
"name" : "_sha512.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396584960,
"size" : 32768,
"uuid" : "dc4ae342-b3c4-3716-a530-b1568a67f912",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so",
"name" : "binascii.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4395991040,
"size" : 32768,
"uuid" : "6333bf6e-f980-3714-b65f-a12997bfe10a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so",
"name" : "_struct.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396089344,
"size" : 16384,
"uuid" : "1348d940-0f3a-37cb-9a27-37db7b4734d1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so",
"name" : "fcntl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396826624,
"size" : 16384,
"uuid" : "8d17df9f-a171-32fe-848a-1380ca2546d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so",
"name" : "_posixsubprocess.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396666880,
"size" : 32768,
"uuid" : "ce09d1ac-f6df-3770-9dda-8f52871a152d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so",
"name" : "select.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4396748800,
"size" : 16384,
"uuid" : "968f7d44-5fa3-31d9-8b22-92eb2206cc84",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so",
"name" : "_arrays.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4400267264,
"size" : 1130496,
"uuid" : "4442f722-a049-33ee-8cfe-e5e288b44421",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4417396736,
"size" : 4947968,
"uuid" : "fd4b95ff-f84a-34d3-939c-f932f374ddb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so",
"name" : "_multiarray_umath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4492439552,
"size" : 66404352,
"uuid" : "7048d1fd-b9a9-3f6a-b752-ae8be69f6c3f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4429889536,
"size" : 6565888,
"uuid" : "ae37c55e-f850-3cf7-86e4-bbd86809bc1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4399681536,
"size" : 319488,
"uuid" : "a1783d23-d187-3d92-ade7-2a80619e7485",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib",
"name" : "libquadmath.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4399468544,
"size" : 69632,
"uuid" : "6d59656e-a224-3642-80b9-ca07ca06e7c1",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib",
"name" : "libgcc_s.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4400037888,
"size" : 114688,
"uuid" : "79de93b8-7f0e-3adc-8fde-969984151905",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so",
"name" : "_pickle.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4399325184,
"size" : 16384,
"uuid" : "6f069f98-51a6-3478-9053-9d1f2fbebd9b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so",
"name" : "_contextvars.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4402769920,
"size" : 81920,
"uuid" : "79cd772e-9106-339a-acb7-ba43552b15a7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so",
"name" : "_multiarray_tests.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4411830272,
"size" : 81920,
"uuid" : "cc072b20-11ee-3eb4-b287-8393ef51db95",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so",
"name" : "_ctypes.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4404195328,
"size" : 163840,
"uuid" : "95ecdafc-7133-362d-9f9c-dd26ff543a5b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so",
"name" : "_umath_linalg.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4403965952,
"size" : 81920,
"uuid" : "2c97d6ef-aec3-361d-bc4d-0dd7137ad6ed",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so",
"name" : "_pocketfft_internal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413829120,
"size" : 655360,
"uuid" : "f65b5844-4c12-381e-8af8-637620272103",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so",
"name" : "mtrand.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413300736,
"size" : 163840,
"uuid" : "188f02a8-df66-3e0c-8946-153af5eaba44",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so",
"name" : "bit_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4414599168,
"size" : 196608,
"uuid" : "9de7ed17-62fe-3c59-a8e9-3d3074cb449e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so",
"name" : "_common.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4402626560,
"size" : 32768,
"uuid" : "c8a36b29-9fb1-3c9e-bb16-9698b6a379d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so",
"name" : "_hashlib.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4470247424,
"size" : 2260992,
"uuid" : "9077f550-4289-3012-8803-cca73b9d943d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4404097024,
"size" : 32768,
"uuid" : "1de3cb49-cee7-3aec-9885-69438bcbb671",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so",
"name" : "_blake2.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4416364544,
"size" : 327680,
"uuid" : "05826eca-98c1-3b93-b72a-5c523819d49a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so",
"name" : "_bounded_integers.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413546496,
"size" : 81920,
"uuid" : "5b3a56f1-c5e3-344a-86ff-810850013d80",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so",
"name" : "_mt19937.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413693952,
"size" : 65536,
"uuid" : "b543ab2e-918d-3187-88cc-ed0733756a55",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so",
"name" : "_philox.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4415926272,
"size" : 81920,
"uuid" : "9e7a3d28-fb10-3335-bbe0-1f2a4e6e237a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so",
"name" : "_pcg64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413161472,
"size" : 49152,
"uuid" : "9215cc4e-48d6-384f-aa4e-fa2ce81a8a1f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so",
"name" : "_sfc64.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4423999488,
"size" : 770048,
"uuid" : "15252f8d-5c11-35f9-8f3b-b8c1dd465de8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so",
"name" : "_generator.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4399390720,
"size" : 16384,
"uuid" : "4161acf6-42c3-3364-aca8-8d14917132b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so",
"name" : "_opcode.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4416073728,
"size" : 147456,
"uuid" : "2c719e3d-a419-3692-a578-2819f3d838f6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so",
"name" : "_geometry.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4413059072,
"size" : 32768,
"uuid" : "b334e8fd-e63d-3cac-89e8-071a263d4818",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so",
"name" : "_json.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480663552,
"size" : 1720320,
"uuid" : "d186fce2-169a-3875-8ca4-f2fcd55371cf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4484382720,
"size" : 5373952,
"uuid" : "f4950342-54e3-3755-a88f-e2a6406c1fc3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4416806912,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 94208,
"uuid" : "af83d03f-07f1-3a9d-8bc2-7d9a51e32298",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "61439.81.1"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4429094912,
"size" : 98304,
"uuid" : "3a35763b-1c12-3805-b15b-6ffa69bd1f52",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/sip.cpython-311-darwin.so",
"name" : "sip.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4473163776,
"size" : 2867200,
"uuid" : "04d3e498-8e36-3f03-9aa5-8a19040cc57f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4971806720,
"size" : 4931584,
"uuid" : "6b647ba7-e77f-36aa-937c-028f9cb4875c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986744832,
"size" : 7274496,
"uuid" : "57e18c1d-e3ae-37c5-ada4-dcc62718794e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4490641408,
"size" : 540672,
"uuid" : "8b52e419-6929-39c7-8f25-239bd787b9b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4965408768,
"size" : 1523712,
"uuid" : "8cf677f1-f820-300f-bbea-491cfe548a9b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4429291520,
"size" : 65536,
"uuid" : "e61f8860-5bfc-3097-919d-761e57850659",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4423716864,
"size" : 98304,
"uuid" : "c2859284-9c93-3dd9-a78b-839df778dfea",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4968685568,
"size" : 294912,
"uuid" : "5154fa08-ddcc-3174-a42d-4e333e150ee9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5189771264,
"size" : 183599104,
"uuid" : "af091873-5278-3492-8e76-7c22e65c04ac",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4995313664,
"size" : 4210688,
"uuid" : "1b342485-b5a8-3134-8fbe-a4e607e770f3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4969807872,
"size" : 425984,
"uuid" : "78a08e9f-03a8-3e55-b319-5d7390d883d3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978212864,
"size" : 557056,
"uuid" : "17e7e0a2-1745-3a18-a3d2-87857777737e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4480339968,
"size" : 180224,
"uuid" : "de6e3816-a208-301f-a7fc-0bbbb64c78a8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5001064448,
"size" : 4292608,
"uuid" : "33075afc-2a8b-3528-b0dd-4a5b769a2f54",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4980469760,
"size" : 1146880,
"uuid" : "b57854a4-c721-36b4-830e-2fe9e929a811",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4970446848,
"size" : 458752,
"uuid" : "f7f96df9-e51a-3764-90a4-730a57198670",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4429455360,
"size" : 81920,
"uuid" : "a2d3acde-e0db-3d21-acc4-ebfa3db5fd5c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4978966528,
"size" : 475136,
"uuid" : "9513715b-6b36-3b31-8470-149dba6c1656",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4797771776,
"size" : 147456,
"uuid" : "34ad5a58-946c-3e72-bdbb-522e51148d3a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4423495680,
"size" : 32768,
"uuid" : "9d400ff9-e70a-351e-bb34-5259e39c88b8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4969177088,
"size" : 229376,
"uuid" : "e05fb3ee-5d42-3121-a19c-5ced50cb3132",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982890496,
"size" : 655360,
"uuid" : "a9df58b1-89b1-36c8-9d9e-fe251bf025f2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 5178531840,
"CFBundleShortVersionString" : "6.1.13",
"CFBundleIdentifier" : "com.apple.AMDRadeonX6000GLDriver",
"size" : 1368064,
"uuid" : "6b2eda1a-5af1-3f93-983b-8e5da279071e",
"path" : "\/System\/Library\/Extensions\/AMDRadeonX6000GLDriver.bundle\/Contents\/MacOS\/AMDRadeonX6000GLDriver",
"name" : "AMDRadeonX6000GLDriver",
"CFBundleVersion" : "6.0.1"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982247424,
"size" : 163840,
"uuid" : "b955d9be-5646-38cb-aba8-4337ae17c16d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982525952,
"size" : 180224,
"uuid" : "2eccca6e-b160-375e-979b-d1d174cf5497",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so",
"name" : "pyexpat.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4981977088,
"size" : 65536,
"uuid" : "9b2e2c2e-1abb-329d-aeb2-9921c2085377",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so",
"name" : "_socket.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982108160,
"size" : 49152,
"uuid" : "19fe4936-cd05-35cf-b67f-f07ddb83c195",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so",
"name" : "array.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4982804480,
"size" : 16384,
"uuid" : "1fceb320-1415-384c-914b-89deb7181eee",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so",
"name" : "_heapq.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986503168,
"size" : 16384,
"uuid" : "ab3e7bb1-b4dd-35a0-a44b-f87a59b1adbb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_queue.cpython-311-darwin.so",
"name" : "_queue.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5178232832,
"size" : 98304,
"uuid" : "65c5907a-9e69-3d89-a863-0f7df59fe19b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so",
"name" : "_ssl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5187129344,
"size" : 393216,
"uuid" : "35eaab10-69c7-3234-bb9c-f3ec617bade8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986568704,
"size" : 16384,
"uuid" : "82f64d2e-cca2-34b8-bb59-0743603ce84d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so",
"name" : "_scproxy.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986634240,
"size" : 16384,
"uuid" : "ed64b7f2-4c49-3dd2-ae71-a987d310a8d5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/grp.cpython-311-darwin.so",
"name" : "grp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986343424,
"size" : 32768,
"uuid" : "9b9ef339-f44c-3452-b5b0-92e4c1cfabb7",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so",
"name" : "_csv.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4986425344,
"size" : 16384,
"uuid" : "d0ba4ed3-33c4-30c0-9fb8-0fcdd129cd4a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5401837568,
"size" : 1196032,
"uuid" : "61f0a987-8fa6-31d7-9915-0429ef9f504e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5178028032,
"size" : 32768,
"uuid" : "d58debec-4cde-3edd-9365-e9ebb03fd2b0",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5177929728,
"size" : 16384,
"uuid" : "3edbdaff-bca7-3dde-878a-d25fb44e9018",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5398118400,
"size" : 212992,
"uuid" : "06f666f8-e01d-3977-8588-cd8763539de2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5188784128,
"size" : 458752,
"uuid" : "cd45a26e-b65b-3ce2-beb8-3b85f74e2cad",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so",
"name" : "cymol.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5189488640,
"size" : 114688,
"uuid" : "60d71170-122f-3388-8946-9dc82b508714",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so",
"name" : "tinyarray.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5177774080,
"size" : 49152,
"uuid" : "f6ffe558-91c7-3148-a81a-e03bb00eac29",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so",
"name" : "cytmpl.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5400215552,
"size" : 180224,
"uuid" : "cd62d8e3-6428-319c-b174-d861a467788d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so",
"name" : "_surface.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5408980992,
"size" : 4210688,
"uuid" : "08a0cdf4-85d3-328a-98ac-8a7ec48356eb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5399896064,
"size" : 147456,
"uuid" : "a66bb1e2-ecf4-3220-9c8e-a465d9305940",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5406314496,
"size" : 671744,
"uuid" : "99f6a3dc-9f85-3a3d-8ee5-4560b2308969",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so",
"name" : "_map.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5178445824,
"size" : 16384,
"uuid" : "143bfd0a-fbaa-3849-bbaa-9d3b2d44c38f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md.cpython-311-darwin.so",
"name" : "md.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5401559040,
"size" : 147456,
"uuid" : "d1f6d0b1-d05a-3cc7-8c15-0d72176e5bcb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/charset_normalizer\/md__mypyc.cpython-311-darwin.so",
"name" : "md__mypyc.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5407182848,
"size" : 1114112,
"uuid" : "0cfdf335-42fa-36ab-845a-44fda5a4f103",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so",
"name" : "unicodedata.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5187010560,
"size" : 32768,
"uuid" : "b7700fae-a522-3c9e-81c7-8301374c2b6e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multibytecodec.cpython-311-darwin.so",
"name" : "_multibytecodec.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5178142720,
"size" : 16384,
"uuid" : "83a52d52-e452-3db7-8c1f-eee3d4bbc071",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_uuid.cpython-311-darwin.so",
"name" : "_uuid.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5405868032,
"size" : 278528,
"uuid" : "6bf62b8d-952b-3c3e-87b6-67992b1c9e85",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_decimal.cpython-311-darwin.so",
"name" : "_decimal.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5416321024,
"size" : 393216,
"uuid" : "3d435819-60f1-382a-b0ff-03aa1fec22a9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so",
"name" : "_imaging.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5417668608,
"size" : 655360,
"uuid" : "de0a2e7d-b9a1-33f1-9bf1-e8db3a502cb9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib",
"name" : "libtiff.6.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5418438656,
"size" : 671744,
"uuid" : "5077f363-3598-3431-bc7b-2cfbf3a714d9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib",
"name" : "libjpeg.62.4.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5419192320,
"size" : 557056,
"uuid" : "5375f006-b7eb-3be7-88de-a910b38e7627",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.2.dylib",
"name" : "libopenjp2.2.5.2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5408362496,
"size" : 131072,
"uuid" : "84f3a08c-6bf8-33d7-89c0-5e8026f4e202",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.dylib",
"name" : "libz.1.3.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5416910848,
"size" : 163840,
"uuid" : "5070a345-658e-31a4-80b9-d06f9abe9d5b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.dylib",
"name" : "libxcb.1.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5417189376,
"size" : 245760,
"uuid" : "2f03407e-0f9b-3146-b009-33e0f793869a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5399699456,
"size" : 16384,
"uuid" : "2b102593-309d-3ad2-98ff-fd87e42302d8",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.0.0.dylib",
"name" : "libXau.6.0.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5399764992,
"size" : 16384,
"uuid" : "e8200b4e-f282-3cd7-9be9-8f3798584047",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/termios.cpython-311-darwin.so",
"name" : "termios.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5399830528,
"size" : 16384,
"uuid" : "ab1ede05-8390-3ffd-92d7-7ce53a7c9be2",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_c_internal_utils.cpython-311-darwin.so",
"name" : "_c_internal_utils.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5408739328,
"size" : 131072,
"uuid" : "72e8fb51-e1eb-3955-ad6f-f9d432bd89fd",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_path.cpython-311-darwin.so",
"name" : "_path.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5429096448,
"size" : 671744,
"uuid" : "9f323cc7-da32-3fe1-b98b-163a8b0bc4f6",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/ft2font.cpython-311-darwin.so",
"name" : "ft2font.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5428465664,
"size" : 98304,
"uuid" : "b95403ec-ebee-307e-a234-a98fa49425bf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/kiwisolver\/_cext.cpython-311-darwin.so",
"name" : "_cext.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5428711424,
"size" : 163840,
"uuid" : "fe32f21a-cd3a-3ad4-9176-dddbd203789a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/matplotlib\/_image.cpython-311-darwin.so",
"name" : "_image.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5417500672,
"size" : 16384,
"uuid" : "5c82e5f4-7664-3325-95c1-a2286b531838",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so",
"name" : "_load_libs.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5408542720,
"size" : 32768,
"uuid" : "9c20a913-80f2-3790-82d6-f5f257f40a80",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5417566208,
"size" : 32768,
"uuid" : "2e49f12e-2bd1-36ff-a452-6af1ad840335",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so",
"name" : "errorchecker.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5441822720,
"size" : 163840,
"uuid" : "84c28449-2886-395e-a902-73f67264df32",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so",
"name" : "arraydatatype.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5442510848,
"size" : 180224,
"uuid" : "d98e7117-18dd-37b7-9c74-472d0c79861a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so",
"name" : "wrapper.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5428322304,
"size" : 32768,
"uuid" : "1936789e-b9b0-3e1f-8cfa-fc88f0803ad5",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so",
"name" : "formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5428219904,
"size" : 32768,
"uuid" : "ada3a7a8-1026-3b4a-9d87-6fce8df2fb33",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so",
"name" : "latebind.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5442150400,
"size" : 98304,
"uuid" : "7927d573-a75a-3483-b846-b34afb8cd28d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so",
"name" : "vbo.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5495828480,
"size" : 32768,
"uuid" : "04424808-7083-3ca4-9997-8dae04f5e18a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5495926784,
"size" : 32768,
"uuid" : "6665c7fa-5429-307c-ae72-f02b4663e991",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496692736,
"size" : 589824,
"uuid" : "3b812afb-4558-3629-a105-54f0123a8756",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496025088,
"size" : 32768,
"uuid" : "6be87464-6bae-3acd-ba8a-0ad9c42d2192",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496221696,
"size" : 32768,
"uuid" : "587053e8-9ed2-37b5-bae3-52598b1c0ed9",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5498060800,
"size" : 622592,
"uuid" : "8fa53a40-5029-35c1-b403-de4b5ebc296b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5498765312,
"size" : 442368,
"uuid" : "7a23c3a8-9cd7-3b95-9f4c-fe861273501d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496320000,
"size" : 32768,
"uuid" : "24897911-1bb1-3eb1-99c4-dc57d4440d49",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5499289600,
"size" : 245760,
"uuid" : "535f7dfd-d62a-33b3-9e52-af14094c4e5e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496123392,
"size" : 32768,
"uuid" : "cbbb200f-5258-33bb-baf8-e08d98ddc672",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5508911104,
"size" : 8765440,
"uuid" : "14ff39ad-fca1-3b61-ada4-f5f95bd02945",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496516608,
"size" : 32768,
"uuid" : "0372cf7c-a608-3177-b1e1-bd312f0a6434",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5496418304,
"size" : 32768,
"uuid" : "52133b8a-b7f2-307f-99eb-74e22691cf79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5497462784,
"size" : 32768,
"uuid" : "eca278d3-d60a-39de-8179-e4e3d7044450",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 5495734272,
"size" : 53248,
"uuid" : "6cd1b595-3b5f-3166-9a4f-5abfb45b87eb",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5497995264,
"size" : 16384,
"uuid" : "136e83be-523c-3e0a-8ee9-ac44338f577c",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so",
"name" : "_mac_util.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5504950272,
"size" : 65536,
"uuid" : "5cfe15a5-c7e4-36db-be9c-4d4ef3728796",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so",
"name" : "numpy_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5507760128,
"size" : 32768,
"uuid" : "20c4af3a-4b84-3cc8-aa82-b08768c1116d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so",
"name" : "nones_formathandler.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5804109824,
"size" : 16384,
"uuid" : "946403b9-d874-3c5d-bc5b-104d68f45c19",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_multiprocessing.cpython-311-darwin.so",
"name" : "_multiprocessing.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5899972608,
"size" : 524288,
"uuid" : "58e1300b-c472-3863-8fc4-4eb27185cbbf",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so",
"name" : "mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5898575872,
"size" : 442368,
"uuid" : "9141612b-bf67-390f-8b66-18a585729cab",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
"name" : "_mmcif.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5802508288,
"size" : 98304,
"uuid" : "ae16bb51-bedf-3c8a-9b96-5684b608789d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so",
"name" : "_ribbons.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5794881536,
"size" : 32768,
"uuid" : "3b76dfeb-802d-3ce8-9151-7ec4ff5a682b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
"name" : "_graphics.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5837463552,
"size" : 180224,
"uuid" : "6d0a4aa1-f80b-3e16-baed-3f694111a75d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
"name" : "_pdbio.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5867712512,
"size" : 32768,
"uuid" : "4cafbf15-47c9-3e93-abf0-7f8f01ea6b1d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
"name" : "_imagingmath.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5804486656,
"size" : 32768,
"uuid" : "cc4a7194-2678-3514-acc4-75a7275bf407",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5803945984,
"size" : 16384,
"uuid" : "62001a43-deed-3f40-8d2d-57ad475e6c95",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5716168704,
"size" : 16384,
"uuid" : "67c108ea-3b9a-3731-a794-8ca4049035a3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-311-darwin.so",
"name" : "_sw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5716586496,
"size" : 16384,
"uuid" : "0cf88116-cc85-32ed-b523-593e852fc25f",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5716873216,
"size" : 16384,
"uuid" : "ce412e76-387f-357d-b7be-b4654bc453d4",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/dssp\/_dssp.cpython-311-darwin.so",
"name" : "_dssp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5717225472,
"size" : 32768,
"uuid" : "ad017f10-16c5-3c7b-8ee2-47e1604a376a",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-311-darwin.so",
"name" : "_nw.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5730676736,
"size" : 16384,
"uuid" : "3fc409e5-8a0c-3a28-b969-c510ebb14695",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/mmap.cpython-311-darwin.so",
"name" : "mmap.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5731254272,
"size" : 16384,
"uuid" : "4840c39a-1a25-34b4-8447-761212371917",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_webp.cpython-311-darwin.so",
"name" : "_webp.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 6042841088,
"size" : 606208,
"uuid" : "074f2081-2949-3e6f-b61d-52b3f5c95e66",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebp.7.dylib",
"name" : "libwebp.7.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5794402304,
"size" : 49152,
"uuid" : "904783ad-6f16-31e9-b1a8-65089262f743",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebpmux.3.dylib",
"name" : "libwebpmux.3.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5756657664,
"size" : 16384,
"uuid" : "77acefac-08c8-3191-ab5a-653ed960247e",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libwebpdemux.2.dylib",
"name" : "libwebpdemux.2.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5783105536,
"size" : 32768,
"uuid" : "bf1dedf6-3f1f-3378-9ec6-c91ecb5c45e3",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libsharpyuv.0.dylib",
"name" : "libsharpyuv.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5741309952,
"size" : 49152,
"uuid" : "5a8c2b45-6fbf-384e-aa16-53365b54f7fb",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atom_search\/ast.cpython-311-darwin.so",
"name" : "ast.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5834424320,
"size" : 81920,
"uuid" : "34acef9d-ca82-3fc2-8719-453f3bf3da79",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/chem_group\/_chem_group.cpython-311-darwin.so",
"name" : "_chem_group.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5818855424,
"size" : 98304,
"uuid" : "3064d9b7-75d7-343e-bf98-036ded114223",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so",
"name" : "_version.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 6003179520,
"size" : 212992,
"uuid" : "9ff84874-4ecd-3fed-ba32-23b23bfaaecc",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so",
"name" : "_frame.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 5986340864,
"size" : 131072,
"uuid" : "272f9886-859c-3c84-8ea4-2bde196ca08b",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so",
"name" : "_serialize.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 6003474432,
"size" : 131072,
"uuid" : "99497e49-7155-3c86-b62e-dd8a79f1be5d",
"path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so",
"name" : "_cmsgpack.cpython-311-darwin.so"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703217029120,
"size" : 245760,
"uuid" : "c214d771-f6a3-30be-b657-b4e0cb81c9df",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703217274880,
"size" : 49152,
"uuid" : "2b452c39-67e1-3f73-87ca-5e07d5f1e90d",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703215857664,
"size" : 561144,
"uuid" : "12e8dc9e-ee00-37e7-8830-dc84a6de23b1",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703217508352,
"size" : 40936,
"uuid" : "c55810b0-b8d2-3648-9009-570354c94d10",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703312719872,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 5042162,
"uuid" : "cd52ebdf-7b39-37d9-9f84-9bb672715b96",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703215550464,
"size" : 294906,
"uuid" : "43e79603-edb3-3d9a-995b-91dfc8e49a9c",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703217737728,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4841443,
"uuid" : "404c409f-d28c-309d-ade3-f0ee6f1ca33d",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "3302.1.400"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703410225152,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3002358,
"uuid" : "0d3fd4c1-55be-30b9-aa97-225609c52278",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703278145536,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 21999608,
"uuid" : "e3f76bb8-4950-3c7a-8aa7-8516a93aeeb9",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2575.40.6"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703213543424,
"size" : 572544,
"uuid" : "f2913392-361a-304f-b30d-486be5639e2d",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703216418816,
"size" : 511996,
"uuid" : "8323bbd6-c37a-33d4-bd4e-d12bc3b17415",
"path" : "\/usr\/lib\/libc++.1.dylib",
"name" : "libc++.1.dylib"
}
],
"sharedCache" : {
"base" : 140703212793856,
"size" : 25769803776,
"uuid" : "516bea14-552c-3fc6-ab95-a99ee266aaf3"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=4.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 764K 59 \nColorSync 272K 33 \nCoreAnimation 5864K 246 \nCoreGraphics 16K 3 \nCoreServices 620K 2 \nCoreUI image data 5036K 41 \nDispatch continuations 128.0M 1 \nFoundation 36K 2 \nIOKit 23.3M 3 \nKernel Alloc Once 8K 1 \nMALLOC 3.1G 10809 \nMALLOC guard page 48K 12 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 4 \nOpenGL GLSL 384K 4 \nSTACK GUARD 156K 39 \nStack 162.8M 40 \nStack Guard 56.0M 1 \nVM_ALLOCATE 637.5M 754 \nVM_ALLOCATE (reserved) 128.0M 1 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 41.8M 1101 \n__DATA_CONST 114.4M 975 \n__DATA_DIRTY 2569K 341 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5176K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 216.4M 167 \n__OBJC_RO 76.9M 1 \n__OBJC_RW 2375K 2 \n__TEXT 1.4G 1117 \n__TPRO_CONST 272K 2 \ndyld private memory 20K 2 \nmapped file 577.8M 100 \nowned unmapped memory 344.9M 1 \nshared memory 3028K 35 \n=========== ======= ======= \nTOTAL 6.9G 15908 \nTOTAL, minus reserved VM space 6.8G 15908 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "0cd94223fc2c91e3df682c71721754d0730f484c",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64c17a9925d75a7281053d4c",
"factorPackIds" : {
"SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC" : "64d29746ad29a465b3bbeace"
},
"deploymentId" : 240000001
},
{
"rolloutId" : "644114de41e7236e6177f9bd",
"factorPackIds" : {
},
"deploymentId" : 240000013
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1imp
Summary of feedback from opening 1imp fetched from pdb
---
note | Fetching compressed mmCIF 1imp from http://files.rcsb.org/download/1imp.cif
1imp title:
Colicin E9 immunity protein IM9, NMR, 21 structures [more info...]
Chain information for 1imp
---
Chain | Description | UniProt
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A 1.21/A | IM9 | IMM9_ECOLI 1-86
> hide #1.1 models
> show #1.1 models
> hide models
> show #1.1 models
> open 1fsj
Summary of feedback from opening 1fsj fetched from pdb
---
note | Fetching compressed mmCIF 1fsj from http://files.rcsb.org/download/1fsj.cif
1fsj title:
Crystal structure of the E9 DNAse domain [more info...]
Chain information for 1fsj #2
---
Chain | Description | UniProt
B C D E | COLICIN E9 | CEA9_ECOLI 2-134 202-334 402-434 602-734
Non-standard residues in 1fsj #2
---
PO4 — phosphate ion
ZN — zinc ion
1fsj mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
3| author_defined_assembly
4| author_defined_assembly
> hide #!1 models
Drag select of 49 atoms, 132 residues, 4 pseudobonds, 43 bonds
> hide #2 cartoons
> show sel cartoons
Drag select of 60 atoms, 4 pseudobonds, 55 bonds
> hide sel atoms
Drag select of 141 atoms, 8 pseudobonds, 127 bonds
> hide sel atoms
> select clear
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/IFhnh_Manuscript/maps_and_models/NTS_cleaved/halfcleaved_HNH_center_main_model_refined2.pdb"
Chain information for halfcleaved_HNH_center_main_model_refined2.pdb #3
---
Chain | Description
Aa | No description available
Ba | No description available
Ca | No description available
DA | No description available
Da | No description available
Db | No description available
Dc | No description available
Dd | No description available
De | No description available
Df | No description available
EA | No description available
FA | No description available
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/IFhnh_Manuscript/maps_and_models/NTS_cleaved/halfcleaved_HNH_center_main_map_2p4Å.mrc"
Opened halfcleaved_HNH_center_main_map_2p4Å.mrc as #4, grid size 420,420,420,
pixel 0.725, shown at level 0.0319, step 2, values float32
> volume #4 level 0.07
> volume #4 step 1
> hide #!4 models
> style stick
Changed 56061 atom styles
> color #3/DA light gray
> color #3/EA dim gray
> color #3/FA dark red
> color #3/Ca rebecca purple
> color #3/Ba forest green
> color #3/Da,Db,Dc,Dd,De,Df khaki
> color #3/Aa steel blue
> color #3/Aa:232-350 dark turquoise
> hide #3 atoms
> show #3 cartoons
Drag select of 49 atoms, 132 residues, 4 pseudobonds, 43 bonds
> ui mousemode right "rotate selected models"
> view matrix models #2,1,0,0,82.662,0,1,0,181.25,0,0,1,114.9
> view matrix models
> #2,1,0.0013443,-0.0025868,85.9,-0.0013444,1,-6.0428e-05,181.66,0.0025868,6.3905e-05,1,96.743
> mmaker sel to #3/Aa:230-350
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_refined2.pdb, chain Aa (#3) with
1fsj, chain E (#2), sequence alignment score = 97
RMSD between 11 pruned atom pairs is 1.284 angstroms; (across all 97 pairs:
16.295)
> color #2 yellow
> color #2 byhetero
> hide #!3 models
> select subtract #2/E:700
1046 atoms, 43 bonds, 4 pseudobonds, 135 residues, 2 models selected
> select subtract #2/E:701
1038 atoms, 39 bonds, 4 pseudobonds, 134 residues, 2 models selected
> select subtract #2/E:702
1028 atoms, 32 bonds, 3 pseudobonds, 133 residues, 2 models selected
> select subtract #2/E:703
1018 atoms, 25 bonds, 3 pseudobonds, 132 residues, 2 models selected
> select subtract #2/E:719
1010 atoms, 25 bonds, 3 pseudobonds, 131 residues, 2 models selected
> select subtract #2/E:720
999 atoms, 25 bonds, 3 pseudobonds, 130 residues, 2 models selected
> select subtract #2/E:721
992 atoms, 25 bonds, 3 pseudobonds, 129 residues, 2 models selected
> select subtract #2/E:722
985 atoms, 25 bonds, 3 pseudobonds, 128 residues, 2 models selected
> select clear
> select add #2/E:700
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #2/E:701
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add #2/E:702
27 atoms, 25 bonds, 3 residues, 1 model selected
> select add #2/E:703
37 atoms, 35 bonds, 4 residues, 1 model selected
> select add #2/E:719
45 atoms, 43 bonds, 5 residues, 1 model selected
> select add #2/E:720
56 atoms, 53 bonds, 6 residues, 1 model selected
> select add #2/E:721
63 atoms, 59 bonds, 7 residues, 1 model selected
> select add #2/E:722
70 atoms, 65 bonds, 8 residues, 1 model selected
> hide #!2 models
> show #!3 models
> mmaker sel to #3/Aa:300-325
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_refined2.pdb, chain Aa (#3) with
1fsj, chain E (#2), sequence alignment score = 33.3
RMSD between 6 pruned atom pairs is 0.986 angstroms; (across all 8 pairs:
2.082)
> show #!2 models
> view matrix models
> #2,0.97297,-0.22873,-0.031935,103.66,0.22967,0.94372,0.23802,167.46,-0.024305,-0.23892,0.97073,110.17
> view matrix models
> #2,0.97551,-0.19874,-0.094297,106.33,0.21196,0.96388,0.16128,171.49,0.058839,-0.17731,0.98239,106.64
> view matrix models
> #2,0.97749,-0.14562,0.15266,94.724,0.17631,0.96123,-0.21202,189.82,-0.11586,0.23416,0.96527,111.65
> select clear
> select #2/E:702
10 atoms, 10 bonds, 1 residue, 1 model selected
> view matrix models
> #2,0.98567,-0.047376,0.16189,94.269,0.055707,0.99733,-0.047316,185.39,-0.15921,0.055656,0.98567,112.54
> select #2/E:700
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #2/E:701
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add #2/E:702
27 atoms, 25 bonds, 3 residues, 1 model selected
> select add #2/E:703
37 atoms, 35 bonds, 4 residues, 1 model selected
> select add #2/E:704
45 atoms, 42 bonds, 5 residues, 1 model selected
> select add #2/E:706
52 atoms, 49 bonds, 6 residues, 1 model selected
> select add #2/E:707
60 atoms, 56 bonds, 7 residues, 1 model selected
> select add #2/E:708
66 atoms, 61 bonds, 8 residues, 1 model selected
> select add #2/E:709
75 atoms, 69 bonds, 9 residues, 1 model selected
> select add #2/E:710
79 atoms, 72 bonds, 10 residues, 1 model selected
> mmaker sel to #3/Aa:300-314
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_refined2.pdb, chain Aa (#3) with
1fsj, chain E (#2), sequence alignment score = 46.3
RMSD between 10 pruned atom pairs is 0.499 angstroms; (across all 10 pairs:
0.499)
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> select #3/Aa:280
11 atoms, 10 bonds, 1 residue, 1 model selected
> show #3/Aa:305,280,328,304
> select #3/Aa:332
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> show #!4 models
> transparency 50
> hide #!4 models
> hide #!3 models
> hide #!2 models
> select clear
> show #!3 models
> show #!2 models
> combine #2
> hide #!2 models
> hide #!3 models
> show #5 cartoons
> select #5/C:273
7 atoms, 7 bonds, 1 residue, 1 model selected
> select up
72 atoms, 72 bonds, 10 residues, 1 model selected
> select up
1047 atoms, 1071 bonds, 132 residues, 1 model selected
> delete sel
> select #5/D:407
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #5/B:6
17 atoms, 15 bonds, 2 residues, 1 model selected
> select up
86 atoms, 84 bonds, 10 residues, 1 model selected
> select up
2111 atoms, 2159 bonds, 266 residues, 1 model selected
> delete sel
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Structure/1fsj_E9_nuclease_HNH_like.pdb" models #5
> select #5/E:904@ZN
1 atom, 1 residue, 1 model selected
> select up
3 atoms, 1 bond, 2 residues, 1 model selected
> select up
6 atoms, 4 bonds, 2 residues, 1 model selected
> select #5
1388 atoms, 1087 bonds, 7 pseudobonds, 457 residues, 2 models selected
> select subtract #5/E:804@P
1387 atoms, 1083 bonds, 7 pseudobonds, 457 residues, 2 models selected
> select subtract #5/E:804@O2
1386 atoms, 1083 bonds, 7 pseudobonds, 457 residues, 2 models selected
> select subtract #5/E:804@O3
1385 atoms, 1083 bonds, 6 pseudobonds, 457 residues, 2 models selected
> select subtract #5/E:804@O1
1384 atoms, 1083 bonds, 6 pseudobonds, 457 residues, 2 models selected
> select subtract #5/E:804@O4
1383 atoms, 1083 bonds, 6 pseudobonds, 456 residues, 2 models selected
> select subtract #5/E:904@ZN
1382 atoms, 1083 bonds, 3 pseudobonds, 455 residues, 2 models selected
> delete sel
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Structure/zn_phosphate_from_1fsj.pdb" models #5
> hide #!5 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!2 models
> hide #!2 models
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/IFhnh_Manuscript/maps_and_models/NTS_cleaved/halfcleaved_HNH_center_main_model_refined_with_water.pdb"
Chain information for halfcleaved_HNH_center_main_model_refined_with_water.pdb
#6
---
Chain | Description
Aa | No description available
Ba | No description available
Ca | No description available
DA | No description available
Da | No description available
Db | No description available
Dc | No description available
Dd | No description available
De | No description available
Df | No description available
EA | No description available
FA | No description available
> style stick
Changed 80248 atom styles
> hide #6 atoms
> show #6 cartoons
> show #6/B atoms
> show #6/D atoms
> show #6/C atoms
> show #6/A atoms
> color #6/DA light gray
> color #6/EA dim gray
> color #6/FA dark red
> color #6/Ca rebecca purple
> color #6/Ba forest green
> color #6/Da,Db,Dc,Dd,De,Df khaki
> color #6/Aa steel blue
> color #6/Aa:232-350 dark turquoise
> color #6 byhetero
> show #6/Aa:305,280,328
> show #6/Aa:304,280,328
> show #!5 models
> hide #!5 models
> show #!2 models
> select #6/Aa:303
7 atoms, 6 bonds, 1 residue, 1 model selected
> show #!3 models
> hide #!3 models
> show #!4 models
> volume #4 level 0.09
> hide #!2 models
> show #!2 models
> hide #!4 models
> select #6/Aa:332
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> lighting soft
> lighting simple
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> select #6/Aa:302
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #2/E:700
18 atoms, 16 bonds, 2 residues, 2 models selected
> show sel atoms
> select #2/E:723
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #6/Aa:324
13 atoms, 11 bonds, 2 residues, 2 models selected
> show sel atoms
> open 1v14
Summary of feedback from opening 1v14 fetched from pdb
---
note | Fetching compressed mmCIF 1v14 from http://files.rcsb.org/download/1v14.cif
1v14 title:
Crystal Structure of the Colicin E9, mutant His103Ala, in complex with Mg+2
and dsDNA (resolution 2.9A) [more info...]
Chain information for 1v14 #7
---
Chain | Description | UniProt
A B C D | COLICIN E9 | CEA9_ECOLI 2-134
E F G H I J K L | 5'-D(*GP*CP*GP*AP*TP*CP*GP*CP)-3' |
Non-standard residues in 1v14 #7
---
MG — magnesium ion
1v14 mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
3| author_and_software_defined_assembly
4| author_and_software_defined_assembly
> hide #!2 models
> hide #!6 models
> view
> select add #7
5341 atoms, 5524 bonds, 73 pseudobonds, 623 residues, 5 models selected
> select clear
> select add #7
5328 atoms, 5513 bonds, 73 pseudobonds, 621 residues, 3 models selected
> hide sel atoms
> show sel cartoons
> select clear
> select add #7/G:8
19 atoms, 20 bonds, 1 residue, 1 model selected
> select add #7/H:12
40 atoms, 43 bonds, 2 residues, 1 model selected
> select add #7/J:11
62 atoms, 67 bonds, 3 residues, 1 model selected
> select add #7/I:8
81 atoms, 87 bonds, 4 residues, 1 model selected
> select add #7/C:80
87 atoms, 92 bonds, 5 residues, 1 model selected
> select add #7/B:123
94 atoms, 98 bonds, 6 residues, 1 model selected
> select add #7/E:5
114 atoms, 119 bonds, 7 residues, 1 model selected
> select add #7/F:12
135 atoms, 142 bonds, 8 residues, 1 model selected
> select add #7/A:53
146 atoms, 153 bonds, 9 residues, 1 model selected
> select up
1143 atoms, 1247 bonds, 77 residues, 1 model selected
> select up
3979 atoms, 4147 bonds, 438 residues, 1 model selected
> hide sel cartoons
> select clear
> select #7/D:100
9 atoms, 8 bonds, 1 residue, 1 model selected
> select add #7/D:101
17 atoms, 15 bonds, 2 residues, 1 model selected
> select add #7/D:102
27 atoms, 25 bonds, 3 residues, 1 model selected
> select add #7/D:103
32 atoms, 29 bonds, 4 residues, 1 model selected
> select add #7/D:104
40 atoms, 36 bonds, 5 residues, 1 model selected
> select add #7/D:105
49 atoms, 44 bonds, 6 residues, 1 model selected
> select add #7/D:106
56 atoms, 51 bonds, 7 residues, 1 model selected
> select add #7/D:107
64 atoms, 58 bonds, 8 residues, 1 model selected
> show #!6 models
> mmaker sel to #6/Aa:300-310
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_refined_with_water.pdb, chain Aa
(#6) with 1v14, chain D (#7), sequence alignment score = 23.8
RMSD between 8 pruned atom pairs is 0.406 angstroms; (across all 8 pairs:
0.406)
> color #7 yellow
> color #7 byhetero
> select clear
> select #7/K:6
19 atoms, 20 bonds, 1 residue, 1 model selected
> show #!4 models
> hide #!4 models
> show #!4 models
> show sel atoms
> select #7/K:5
20 atoms, 21 bonds, 1 residue, 1 model selected
> show sel atoms
> view sel
> select #7/D:5
11 atoms, 10 bonds, 1 residue, 1 model selected
> hide #!4 models
> select #7/D:102
10 atoms, 10 bonds, 1 residue, 1 model selected
> select add #7/D:6
18 atoms, 17 bonds, 2 residues, 1 model selected
> select subtract #7/D:6
10 atoms, 10 bonds, 1 residue, 1 model selected
> select add #7/D:5
21 atoms, 20 bonds, 2 residues, 1 model selected
> select add #7/D:103
26 atoms, 24 bonds, 3 residues, 1 model selected
> select add #7/D:100
35 atoms, 32 bonds, 4 residues, 1 model selected
> select add #7/D:127
45 atoms, 42 bonds, 5 residues, 1 model selected
> show sel atoms
> style stick
Changed 85576 atom styles
> select add #7/K:4
66 atoms, 65 bonds, 6 residues, 1 model selected
> select #7/K:5
20 atoms, 21 bonds, 1 residue, 1 model selected
> select add #7/K:6
39 atoms, 41 bonds, 2 residues, 1 model selected
> hide sel cartoons
> select clear
> show #!4 models
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Structure/1v14_E9_nuclease_his103_mut_with_dsDNA.pdb" models #7
> hide #!4 models
> hide #!6 models
> hide #!7 models
> show #!7 models
> show #7 cartoons
> view
> select #7/H:12
21 atoms, 23 bonds, 1 residue, 1 model selected
> select add #7/G:8
40 atoms, 43 bonds, 2 residues, 1 model selected
> select add #7/F:13
60 atoms, 64 bonds, 3 residues, 1 model selected
> select add #7/E:7
82 atoms, 88 bonds, 4 residues, 1 model selected
> select add #7/A:102
92 atoms, 98 bonds, 5 residues, 1 model selected
> select add #7/J:12
113 atoms, 121 bonds, 6 residues, 1 model selected
> select add #7/I:7
135 atoms, 145 bonds, 7 residues, 1 model selected
> select add #7/C:78
141 atoms, 150 bonds, 8 residues, 1 model selected
> select up
956 atoms, 1055 bonds, 56 residues, 1 model selected
> select up
2934 atoms, 3079 bonds, 306 residues, 1 model selected
> select up
2956 atoms, 3079 bonds, 328 residues, 1 model selected
> select up
5328 atoms, 5513 bonds, 621 residues, 1 model selected
> select down
2956 atoms, 3079 bonds, 328 residues, 1 model selected
> delete sel
> select #7/B:89
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
42 atoms, 42 bonds, 5 residues, 1 model selected
> select up
1045 atoms, 1068 bonds, 132 residues, 1 model selected
> delete sel
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Structure/1v14_E9_nuclease_his103_mut_with_dsDNA.pdb" models #7
> hide #!7 models
> open 1emv
Summary of feedback from opening 1emv fetched from pdb
---
note | Fetching compressed mmCIF 1emv from http://files.rcsb.org/download/1emv.cif
1emv title:
Crystal structure of colicin E9 DNAse domain with its cognate immunity protein
IM9 (1.7 angstroms) [more info...]
Chain information for 1emv #8
---
Chain | Description | UniProt
A | IMMUNITY PROTEIN IM9 | IMM9_ECOLI 1-86
B | COLICIN E9 | CEA9_ECOLI 2-134
Non-standard residues in 1emv #8
---
PO4 — phosphate ion
> view
> select #8/A:71
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
121 atoms, 123 bonds, 16 residues, 1 model selected
> select up
651 atoms, 664 bonds, 83 residues, 1 model selected
> delete sel
> mmaker #8/B:100-110 to #6/Aa:300-310
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_refined_with_water.pdb, chain Aa
(#6) with 1emv, chain B (#8), sequence alignment score = 35.4
RMSD between 9 pruned atom pairs is 0.264 angstroms; (across all 9 pairs:
0.264)
> view
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #8 models
> show #8 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> select #8/B:127
10 atoms, 10 bonds, 1 residue, 1 model selected
> show sel atoms
> show #!6 models
> hide #!6 models
> show #!6 models
> select #8/B:100
9 atoms, 8 bonds, 1 residue, 1 model selected
> show sel atoms
> hide #8 models
> hide #!6 models
> show #!5 models
> hide #!5 models
> show #!2 models
> show #!6 models
> select #6/Aa:303
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> select #2/E:704
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #6/Aa:306
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/E:706
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #6/Ba:128
7 atoms, 6 bonds, 1 residue, 1 model selected
> select clear
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!4 models
> lighting simple
> lighting soft
> lighting simple
> hide #!4 models
> hide #!2 models
> hide #!6 models
> show #8 models
> set chain
Expected a keyword
> set chain #8/B A
Expected a keyword
> set chain #8/B to A
Expected a keyword
> set chain A #8/B
Expected a keyword
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/halfcleaved_HNH_center_main_model_refined2.pdb"
Chain information for halfcleaved_HNH_center_main_model_refined2.pdb #9
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
> color #9/L light gray
> color #9/K dim gray
> color #9/J dark red
> color #9/I rebecca purple
> color #9/B forest green
> color #9/C,D,E,F,G,H khaki
> color #9/A steel blue
> color #9/A:232-350 dark turquoise
> style stick
Changed 106889 atom styles
> hide #9 atoms
> show #9 cartoons
> hide #!9 models
> show #!3 models
> hide #!3 models
> show #!6 models
> hide #!6 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> hide #8 models
> show #8 models
> show #9/M atoms
> show #9/N atoms
> hide #!9 models
> show #!9 models
> hide #8 models
> show #8 models
> hide #8 models
> hide #!9 models
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/halfcleaved_HNH_center_main_model_temp2.pdb"
Chain information for halfcleaved_HNH_center_main_model_temp2.pdb #10
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
> hide #10 atoms
> show #10 cartoons
> cartoon style nucleic xsection oval width 1.6 thickness 1.6
> color #10/L light gray
> color #10/K dim gray
> color #10/J dark red
> color #10/I rebecca purple
> color #10/B forest green
> color #10/C,D,E,F,G,H khaki
> color #10/A steel blue
> color #10/A:232-350 dark turquoise
> show #10/K atoms
> style stick
Changed 131055 atom styles
> show #10 & nucleic atoms
> select #10
24166 atoms, 24925 bonds, 3 pseudobonds, 2803 residues, 2 models selected
> nucleotides sel ladder
> select clear
> show #!4 models
> volume #4 level 0.06
> show #10/M,N,O atoms
> select clear
> select #10/K:4
4 atoms, 3 bonds, 1 residue, 1 model selected
> select add #10/K:3
25 atoms, 26 bonds, 2 residues, 1 model selected
> select add #10/K:2
45 atoms, 47 bonds, 3 residues, 1 model selected
> select add #10/K:1
54 atoms, 56 bonds, 4 residues, 1 model selected
> hide sel cartoons
> nucleotides sel atoms
> style nucleic & sel stick
Changed 54 atom styles
> select clear
> color zone #4 near #10 distance 10
> transparency 50
> volume #4 level 0.05
> cartoon style nucleic xsection oval width 1 thickness 1
> color #10/L light gray
> color #10/K dim gray
> color #10/J dark red
> color #10/I rebecca purple
> color #10/B forest green
> color #10/C,D,E,F,G,H khaki
> color #10/A steel blue
> color #10/A:232-350 dark turquoise
> color zone #4 near #10 distance 10
> hide #!10 models
> hide #!4 models
> show #!10 models
> select #10/M:1@MG
1 atom, 1 residue, 1 model selected
> color sel red
> select #10/O:1@O
1 atom, 1 residue, 1 model selected
> color sel blue
> select clear
> color zone #4 near #10 distance 10
> show #!4 models
> hide #!10 models
> color zone #4 near #10 distance 5
> volume #4 level 0.09
> lighting soft
> lighting full
> lighting soft
> color zone #4 near #10 distance 4
> color zone #4 near #10 distance 3
> volume #4 level 0.07
> surface zone #4 nearAtoms #10 distance 2.5
> surface zone #4 nearAtoms #10 distance 3
> select add #4
2 models selected
> ui tool show "Color Actions"
> color sel navajo white
> set bgColor white
> lighting simple
> transparency sel 50
> show #!10 models
> volume #4 level 0.05
> volume #4 level 0.09
> volume #4 level 0.08
> color #10 byhetero
> select clear
> select #10/K:1@N9
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 9 bonds, 1 residue, 1 model selected
> select add #10/K:2@OP2
10 atoms, 9 bonds, 2 residues, 1 model selected
> select up
29 atoms, 31 bonds, 2 residues, 1 model selected
> select down
10 atoms, 9 bonds, 2 residues, 1 model selected
> select add #10/K:2@OP1
11 atoms, 12 bonds, 2 residues, 1 model selected
> select add #10/K:2@O2
12 atoms, 17 bonds, 2 residues, 1 model selected
> select add #10/K:2@O4
13 atoms, 20 bonds, 2 residues, 1 model selected
> select add #10/K:2@C5
14 atoms, 21 bonds, 2 residues, 1 model selected
> select add #10/K:2@C7
15 atoms, 24 bonds, 2 residues, 1 model selected
> select add #10/K:3@N6
16 atoms, 25 bonds, 3 residues, 1 model selected
> select up
28 atoms, 27 bonds, 3 residues, 1 model selected
> select up
50 atoms, 55 bonds, 3 residues, 1 model selected
> hide #!4 models
> select subtract #10/K:3@OP1
49 atoms, 53 bonds, 3 residues, 1 model selected
> select subtract #10/K:3@P
48 atoms, 51 bonds, 3 residues, 1 model selected
> select subtract #10/K:3@OP2
47 atoms, 51 bonds, 3 residues, 1 model selected
> select add #10/K:4@P
48 atoms, 51 bonds, 4 residues, 1 model selected
> select add #10/K:4@OP1
49 atoms, 52 bonds, 4 residues, 1 model selected
> select add #10/K:4@OP2
50 atoms, 54 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@O3'
49 atoms, 53 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@C4'
48 atoms, 50 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@O4'
47 atoms, 48 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@C3'
46 atoms, 48 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@C2'
45 atoms, 47 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@C1'
44 atoms, 46 bonds, 4 residues, 1 model selected
> select subtract #10/K:2@C5'
43 atoms, 46 bonds, 4 residues, 1 model selected
> hide sel atoms
> show #10/K:3 atoms
> hide sel atoms
> select #10/K:3@C5'
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select #10/K:3@C4'
1 atom, 1 residue, 1 model selected
> select add #10/K:3@O3'
2 atoms, 1 residue, 1 model selected
> select add #10/K:3@C2'
3 atoms, 1 residue, 1 model selected
> select add #10/K:3@O4'
4 atoms, 1 residue, 1 model selected
> hide sel atoms
> select #10/K:3@C3'
1 atom, 1 residue, 1 model selected
> select add #10/K:3@C1'
2 atoms, 1 residue, 1 model selected
> select add #10/K:3@C8
3 atoms, 1 residue, 1 model selected
> select up
21 atoms, 23 bonds, 1 residue, 1 model selected
> select down
3 atoms, 1 residue, 1 model selected
> select add #10/K:3@N3
4 atoms, 1 residue, 1 model selected
> select add #10/K:3@C4
5 atoms, 1 residue, 1 model selected
> select add #10/K:3@C5
6 atoms, 1 residue, 1 model selected
> select add #10/K:3@N7
7 atoms, 1 residue, 1 model selected
> select add #10/K:3@C6
8 atoms, 1 residue, 1 model selected
> select add #10/K:3@N6
9 atoms, 1 residue, 1 model selected
> select add #10/K:3@N1
10 atoms, 1 residue, 1 model selected
> select add #10/K:3@C2
11 atoms, 1 residue, 1 model selected
> hide sel atoms
> select #10/K:3@N9
1 atom, 1 residue, 1 model selected
> hide sel atoms
> show #!4 models
> select #10/K:2@C5'
1 atom, 1 residue, 1 model selected
> hide sel atoms
> volume #4 level 0.07
> show #10/A:305,304,280,328
> volume #4 level 0.09
> select #10/K:4@O5'
1 atom, 1 residue, 1 model selected
> hide sel atoms
> color #10/M red
> color #10/O blue
> color #10/O dark blue
> color #10/O blue
> volume #4 level 0.07
> show #10/K:2 atoms
> volume #4 level 0.06
> show #10/K:1-2 atoms
> show #!5 models
> hide #!5 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> hide #!10 models
> show #!10 models
> select #10/K:1@O5'
1 atom, 1 residue, 1 model selected
> select add #10/K:1@C5'
2 atoms, 1 residue, 1 model selected
> select add #10/K:1@C4'
3 atoms, 1 residue, 1 model selected
> select add #10/K:1@O4'
4 atoms, 1 residue, 1 model selected
> select add #10/K:1@C1'
5 atoms, 1 residue, 1 model selected
> select add #10/K:1@N9
6 atoms, 1 residue, 1 model selected
> select add #10/K:1@C2'
7 atoms, 1 residue, 1 model selected
> select add #10/K:1@C3'
8 atoms, 1 residue, 1 model selected
> select add #10/K:1@O3'
9 atoms, 1 residue, 1 model selected
> select add #10/K:2@P
10 atoms, 2 residues, 1 model selected
> select add #10/K:2@OP2
11 atoms, 2 residues, 1 model selected
> select add #10/K:2@OP1
12 atoms, 2 residues, 1 model selected
> select add #10/K:2@O5'
13 atoms, 2 residues, 1 model selected
> select add #10/K:2@C5'
14 atoms, 2 residues, 1 model selected
> hide sel atoms
> show #!4 models
> hide #!4 models
> ui tool show Distances
> select #10/O:1@O
1 atom, 1 residue, 1 model selected
> select #10/K:3@OP2
1 atom, 1 residue, 1 model selected
> select add #10/O:1@O
2 atoms, 2 residues, 1 model selected
> distance #10/K:3@OP2 #10/O:1@O
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/K DA 3 OP2
and /O HOH 1 O: 2.479Å
> select #10/A:304@ND1
1 atom, 1 residue, 1 model selected
> select add #10/M:1@MG
2 atoms, 2 residues, 1 model selected
> distance #10/A:304@ND1 #10/M:1@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A HIS 304 ND1
and /M MG 1 MG: 2.377Å
> select #10/A:328@NE2
1 atom, 1 residue, 1 model selected
> select add #10/M:1@MG
2 atoms, 2 residues, 1 model selected
> distance #10/A:328@NE2 #10/M:1@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A HIS 328 NE2
and /M MG 1 MG: 2.352Å
> select #10/M:1@MG
1 atom, 1 residue, 1 model selected
> select add #10/K:3@OP1
2 atoms, 2 residues, 1 model selected
> distance #10/M:1@MG #10/K:3@OP1
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/M MG 1 MG and
/K DA 3 OP1: 3.166Å
> select #10/A:280@NH2
1 atom, 1 residue, 1 model selected
> select add #10/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #10/A:280@NH2 #10/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A ARG 280 NH2
and /K DA 3 OP2: 2.389Å
> select #10/A:280@NH1
1 atom, 1 residue, 1 model selected
> select add #10/K:3@O5'
2 atoms, 2 residues, 1 model selected
> distance #10/A:280@NH1 #10/K:3@O5'
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A ARG 280 NH1
and /K DA 3 O5': 2.765Å
> select #10/A:238
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #10/A:319
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #10/A:305@ND1
1 atom, 1 residue, 1 model selected
> select add #10/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #10/A:305@ND1 #10/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A HIS 305 ND1
and /K DA 3 OP2: 3.592Å
> select #10/A:309
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel cartoons
> show sel atoms
> select #10/A:309@N
1 atom, 1 residue, 1 model selected
> select add #10/O:1@O
2 atoms, 2 residues, 1 model selected
> distance #10/A:309@N #10/O:1@O
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A LEU 309 N
and /O HOH 1 O: 3.104Å
> select #10/A:309@N
1 atom, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel cartoons
> select clear
> view
> select #10/A:305@ND1
1 atom, 1 residue, 1 model selected
> select add #10/K:3@OP1
2 atoms, 2 residues, 1 model selected
> distance #10/A:305@ND1 #10/K:3@OP1
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #10/A HIS 305 ND1
and /K DA 3 OP1: 3.734Å
> delete sel
> ~distance #10/A:305@ND1 #10/K:3@OP1
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/halfcleaved_HNH_center_main_model_temp2.pdb"
Chain information for halfcleaved_HNH_center_main_model_temp2.pdb #12
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
> style stick
Changed 155221 atom styles
> hide #12 atoms
> color #12/L light gray
> color #12/K dim gray
> color #12/J dark red
> color #12/I rebecca purple
> color #12/B forest green
> color #12/C,D,E,F,G,H khaki
> color #12/A steel blue
> color #12/A:232-350 dark turquoise
> hide #!11 models
> show #!11 models
> close #11
> show #12 cartoons
> cartoon style nucleic xsection oval width 1 thickness 1
> show #12/K:2-3 atoms
> hide #12/K:1-3 cartoons
> select clear
> select #12/K:2@OP1
1 atom, 1 residue, 1 model selected
> select add #12/K:2@OP2
2 atoms, 1 residue, 1 model selected
> select add #12/K:2@P
3 atoms, 1 residue, 1 model selected
> select add #12/K:2@C5'
4 atoms, 1 residue, 1 model selected
> select add #12/K:3@C5'
5 atoms, 2 residues, 1 model selected
> select add #12/K:3@C4'
6 atoms, 2 residues, 1 model selected
> select add #12/K:3@C3'
7 atoms, 2 residues, 1 model selected
> select add #12/K:4
11 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@O4'
12 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C2'
13 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C1'
14 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@N9
15 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C8
16 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C4
17 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C5
18 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@N7
19 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C6
20 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@N6
21 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@N1
22 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@C2
23 atoms, 3 bonds, 3 residues, 1 model selected
> select add #12/K:3@N3
24 atoms, 3 bonds, 3 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #12/K:3@O3'
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select clear
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> select #12/K:2@O5'
1 atom, 1 residue, 1 model selected
> hide sel atoms
> show #12/M,O atoms
> select #12/O:1@O
1 atom, 1 residue, 1 model selected
> color sel blue
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> color sel red
> select clear
> show #12/A:304-305,328,280
> select #12/A:319
8 atoms, 7 bonds, 1 residue, 1 model selected
> select ~sel & ##selected
24158 atoms, 24918 bonds, 3 pseudobonds, 2802 residues, 2 models selected
> show #12/A:304-305,328,280,319
> color #12 byhetero
> select #12/O:1@O
1 atom, 1 residue, 1 model selected
> select add #12/M:1@MG
2 atoms, 2 residues, 1 model selected
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> select #12/O:1@O
1 atom, 1 residue, 1 model selected
> color sel blue
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> color sel red
> select clear
> select #12/A:305@ND1
1 atom, 1 residue, 1 model selected
> select add #12/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #12/A:305@ND1 #12/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/A HIS 305 ND1
and /K DA 3 OP2: 3.159Å
> select #12/A:280@NH2
1 atom, 1 residue, 1 model selected
> select add #12/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #12/A:280@NH2 #12/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/A ARG 280 NH2
and /K DA 3 OP2: 2.389Å
> select #12/A:280@NH1
1 atom, 1 residue, 1 model selected
> select add #12/K:3@O5'
2 atoms, 2 residues, 1 model selected
> distance #12/A:280@NH1 #12/K:3@O5'
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/A ARG 280 NH1
and /K DA 3 O5': 2.765Å
> view
> select #12/K:3@OP1
1 atom, 1 residue, 1 model selected
> select add #12/M:1@MG
2 atoms, 2 residues, 1 model selected
> distance #12/K:3@OP1 #12/M:1@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/K DA 3 OP1
and /M MG 1 MG: 3.166Å
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> select add #12/A:304@ND1
2 atoms, 2 residues, 1 model selected
> distance #12/M:1@MG #12/A:304@ND1
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/M MG 1 MG and
/A HIS 304 ND1: 2.377Å
> select #12/A:328@NE2
1 atom, 1 residue, 1 model selected
> select add #12/M:1@MG
2 atoms, 2 residues, 1 model selected
> distance #12/A:328@NE2 #12/M:1@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/A HIS 328 NE2
and /M MG 1 MG: 2.352Å
> select clear
> color sel maroon
> color sel teal
> color sel cornflower blue
> color sel dark salmon
> color sel dark khaki
> color sel peru
> select #12/O:1@O
1 atom, 1 residue, 1 model selected
> select add #12/K:3@OP2
2 atoms, 2 residues, 1 model selected
> color sel indigo
> color sel red
> select #12/O:1@O
1 atom, 1 residue, 1 model selected
> color sel blue
> select #12/K:3@OP2
1 atom, 1 residue, 1 model selected
> select add #12/O:1@O
2 atoms, 2 residues, 1 model selected
> distance #12/K:3@OP2 #12/O:1@O
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/K DA 3 OP2
and /O HOH 1 O: 2.479Å
> color sel indigo
> select clear
> color sel dark blue
> select clear
> select #12/A:309
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #12/O:1@O
9 atoms, 7 bonds, 2 residues, 1 model selected
Exactly two atoms must be selected!
> select clear
> select #12/A LEU 309 N
Expected a keyword
> select #12/A:309
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel cartoons
> select #12/A:309@N
1 atom, 1 residue, 1 model selected
> select add #12/O:1@O
2 atoms, 2 residues, 1 model selected
> distance #12/A:309@N #12/O:1@O
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #12/A LEU 309 N
and /O HOH 1 O: 3.104Å
> distance style decimalPlaces 2
> distance style decimalPlaces 1
> select subtract #12/O:1@O
1 atom, 1 residue, 1 model selected
> select ~sel & ##selected
24165 atoms, 24925 bonds, 11 pseudobonds, 2803 residues, 3 models selected
> hide #12/A:309 atoms
> show #12/A:309 cartoons
> select clear
> show #!4 models
> volume #4 level 0.07
> volume #4 level 0.08
> select #12/K:2@N3
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
886 atoms, 986 bonds, 45 residues, 1 model selected
> select down
20 atoms, 21 bonds, 1 residue, 1 model selected
> hide sel atoms
> surface dust #4 size 7.25
> surface dust #4 1
Expected a keyword
> surface dust #4 size 1
> show (sel-residues & sidechain) target ab
> hide sel atoms
> select clear
> select #12/K:3@O5'
1 atom, 1 residue, 1 model selected
> select up
21 atoms, 23 bonds, 1 residue, 1 model selected
> show #12/K:2 atoms
> select #12/K:2@C2
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> hide #!4 models
> select subtract #12/K:2@O3'
19 atoms, 20 bonds, 1 residue, 1 model selected
> hide sel atoms
> show #!4 models
> volume #4 level 0.06
> volume #4 level 0.08
> volume #4 level 0.09
> volume #4 level 0.08
> view matrix models
> #12,0.95038,0.072866,-0.30245,40.949,-0.29386,-0.10887,-0.94963,361.72,-0.10212,0.99138,-0.082056,19.143
> show #!10 models
> hide #!10 models
> mmaker #12 to #10
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker halfcleaved_HNH_center_main_model_temp2.pdb, chain A (#10) with
halfcleaved_HNH_center_main_model_temp2.pdb, chain A (#12), sequence alignment
score = 1753
RMSD between 340 pruned atom pairs is 0.001 angstroms; (across all 340 pairs:
0.001)
> ui tool show "Side View"
> hide #11.1 models
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_0p8.tif" width 1984 height
> 1210 supersample 3 transparentBackground true
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> select #2/E:804@O1
1 atom, 1 residue, 1 model selected
> select up
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add #2/E:731@CG
6 atoms, 4 bonds, 2 residues, 1 model selected
> select up
15 atoms, 14 bonds, 2 residues, 1 model selected
> select up
17 atoms, 15 bonds, 3 residues, 1 model selected
> select up
19 atoms, 16 bonds, 4 residues, 1 model selected
> select add #12/A:319@OD1
20 atoms, 16 bonds, 5 residues, 2 models selected
> select up
39 atoms, 35 bonds, 5 residues, 2 models selected
> select add #2/E:31@O
40 atoms, 35 bonds, 6 residues, 2 models selected
> select add #2/E:298@O
41 atoms, 35 bonds, 7 residues, 2 models selected
> select subtract #2/E:298@O
40 atoms, 35 bonds, 6 residues, 2 models selected
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> select add #12
24198 atoms, 24953 bonds, 11 pseudobonds, 2808 residues, 4 models selected
> select subtract #12
32 atoms, 28 bonds, 5 residues, 1 model selected
> hide sel atoms
> select #2/E:701@CB
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #12/A:319@OD1
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #2/E:298@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> color sel dark blue
> select clear
> show #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_0p8.tif" width 1984 height
> 1210 supersample 3
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!12 models
> hide #!4 models
> show #!2 models
> select #2/E:904@ZN
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select clear
> hide #!2 models
> show #!12 models
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> color sel silver
> color sel metallic
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color sel dark gray
> color sel dim gray
> select clear
> color sel red
> select #12/M:1@MG
1 atom, 1 residue, 1 model selected
> color sel red
> color sel dim gray
> select clear
> show #!2 models
> hide #!2 models
> show #!4 models
> color sel red
> color #12/M red
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_0p8.tif" width 1984 height
> 1210 supersample 3
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> color sel tan
> color sel dim gray
> show #!4 models
> select clear
> hide #!2 models
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_0p8.tif" width 1984 height
> 1210 supersample 3
> hide #!4 models
> show #!2 models
> hide #!11 models
> color #2 yellow
> sle #2/E
Unknown command: sle #2/E
> select #2/E
1109 atoms, 1075 bonds, 4 pseudobonds, 190 residues, 2 models selected
> select clear
> ui tool show "Show Sequence Viewer"
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> hide #!2 models
> open "/Users/zxc755/Library/CloudStorage/OneDrive-
> UniversityofCopenhagen/Type
> I-F_HNH/Manuscript/halfcleaved_HNH_center_main_model_temp2.pdb"
Chain information for halfcleaved_HNH_center_main_model_temp2.pdb #13
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
> hide #13 atoms
> show #13 cartoons
> cartoon style nucleic xsection oval width 1 thickness 1
> color #13/DA light gray
> color #13/EA dim gray
> color #13/FA dark red
> color #13/Ca rebecca purple
> color #13/Ba forest green
> color #13/Da,Db,Dc,Dd,De,Df khaki
> color #13/Aa steel blue
> color #13/Aa:232-350 dark turquoise
> hide #!12 models
> show #!12 models
> hide #!13 models
> show #!13 models
> hide #!13 models
> show #!13 models
> color #13/L light gray
> color #13/K dim gray
> color #13/J dark red
> color #13/I rebecca purple
> color #13/B forest green
> color #13/C,D,E,F,G,H khaki
> color #13/A steel blue
> color #13/A:232-350 dark turquoise
> color #13 byhetero
> hide #!12 models
> color #13/M red
> show #13/K:2 atoms
> style stick
Changed 179387 atom styles
> select #13/K:3
21 atoms, 23 bonds, 1 residue, 1 model selected
> select add #13/K:4
25 atoms, 26 bonds, 2 residues, 1 model selected
> select add #13/K:2
45 atoms, 47 bonds, 3 residues, 1 model selected
> hide sel cartoons
> show #13/K:3 atoms
> select subtract #13/K:3@O5'
44 atoms, 45 bonds, 3 residues, 1 model selected
> select subtract #13/K:3@OP2
43 atoms, 44 bonds, 3 residues, 1 model selected
> select subtract #13/K:3@OP1
42 atoms, 43 bonds, 3 residues, 1 model selected
> select subtract #13/K:2@O3'
41 atoms, 42 bonds, 3 residues, 1 model selected
> select subtract #13/K:2@C3'
40 atoms, 40 bonds, 3 residues, 1 model selected
> select add #13/K:2@C3'
41 atoms, 40 bonds, 3 residues, 1 model selected
> select subtract #13/K:2@C3'
40 atoms, 40 bonds, 3 residues, 1 model selected
> select add #13/K:2@C3'
41 atoms, 40 bonds, 3 residues, 1 model selected
> hide sel atoms
> select #13/K:2@O3'
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
886 atoms, 986 bonds, 45 residues, 1 model selected
> show sel atoms
> select #13/K:4@O5'
1 atom, 1 residue, 1 model selected
> select add #13/K:4@OP1
2 atoms, 1 residue, 1 model selected
> select add #13/K:3@O3'
3 atoms, 2 residues, 1 model selected
> select up
25 atoms, 27 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@O5'
24 atoms, 25 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@P
23 atoms, 23 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@OP1
22 atoms, 23 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@OP2
21 atoms, 23 bonds, 2 residues, 1 model selected
> hide sel atoms
> select up
23 atoms, 24 bonds, 3 residues, 1 model selected
> select up
45 atoms, 49 bonds, 3 residues, 1 model selected
> select down
23 atoms, 24 bonds, 3 residues, 1 model selected
> select #13/K:2@N1
1 atom, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select subtract #13/K:2@O3'
19 atoms, 20 bonds, 1 residue, 1 model selected
> hide sel atoms
> show #13/A:304-305,328,280
> show #13/M,O
> select #13/O:1@O
1 atom, 1 residue, 1 model selected
> color sel blue
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!4 models
> show #!12 models
> hide #!12 models
> select #13/K:1
9 atoms, 9 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select #13/K:1@O5'
1 atom, 1 residue, 1 model selected
> select add #13/K:1@C5'
2 atoms, 1 residue, 1 model selected
> hide sel atoms
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select Mg
6 atoms, 6 residues, 6 models selected
> select Zn
5 atoms, 5 residues, 2 models selected
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> select add #2
4547 atoms, 4317 bonds, 16 pseudobonds, 856 residues, 3 models selected
> select subtract #2
1 atom, 1 residue, 1 model selected
> hide #!4 models
> select add #5
6 atoms, 4 bonds, 1 pseudobond, 2 residues, 2 models selected
> select subtract #5
Nothing selected
> select add #5
6 atoms, 4 bonds, 1 pseudobond, 2 residues, 2 models selected
> select subtract #5
Nothing selected
> hide #!5 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select Zn
5 atoms, 5 residues, 2 models selected
> select add #5
10 atoms, 4 bonds, 1 pseudobond, 6 residues, 3 models selected
> select subtract #5
4 atoms, 4 residues, 1 model selected
> show sel atoms
> show #!2 models
> select water
Expected an objects specifier or a keyword
> ui tool show "Check Waters"
> hbonds #13/O interModel false reveal true restrict any name "water H-bonds"
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: halfcleaved_HNH_center_main_model_temp2.pdb #13/K DG 1 N9
2 hydrogen bonds found
> show #4 models
> select #13/O
1 atom, 1 residue, 1 model selected
> display #13/O : view #13/O @ select add #13/K:3@N7
2 atoms, 2 residues, 1 model selected
> select up
22 atoms, 23 bonds, 2 residues, 1 model selected
> hide #!2 models
> hide #!4 models
> select subtract #13/K:3@O5'
21 atoms, 21 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@OP2
20 atoms, 20 bonds, 2 residues, 1 model selected
> select subtract #13/K:3@OP1
19 atoms, 19 bonds, 2 residues, 1 model selected
> hide sel atoms
> select #13/K:3@O5'
1 atom, 1 residue, 1 model selected
> select up
21 atoms, 23 bonds, 1 residue, 1 model selected
> show sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
21 atoms, 23 bonds, 1 residue, 1 model selected
> select subtract #13/K:3@P
20 atoms, 20 bonds, 1 residue, 1 model selected
> select subtract #13/K:3@OP1
19 atoms, 20 bonds, 1 residue, 1 model selected
> select subtract #13/K:3@OP2
18 atoms, 20 bonds, 1 residue, 1 model selected
> select subtract #13/K:3@O5'
17 atoms, 19 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select subtract #13/K:2@O3'
19 atoms, 20 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
9 atoms, 9 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #13/A:308@CD
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> hide sel cartoons
> select #13/A:309@N
1 atom, 1 residue, 1 model selected
> show #13/O atoms
> show #!11 models
> hide #!11 models
> close #11
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel cartoons
> hide sel
> select #13/O:1@O
1 atom, 1 residue, 1 model selected
> select add #13/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #13/O:1@O #13/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/O HOH 1 O and
/K DA 3 OP2: 2.5Å
> select #13/A:309
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> hide sel cartoons
> show sel atoms
> select #13/A:309@N
1 atom, 1 residue, 1 model selected
> select add #13/O:1@O
2 atoms, 2 residues, 1 model selected
> distance #13/A:309@N #13/O:1@O
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/A LEU 309 N
and /O HOH 1 O: 3.1Å
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel cartoons
> hide #11.1 models
> select #13/M:2@MG
1 atom, 1 residue, 1 model selected
> select add #13/K:2@O3'
2 atoms, 2 residues, 1 model selected
> distance #13/M:2@MG #13/K:2@O3'
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/M MG 2 MG and
/K DT 2 O3': 2.9Å
> select #13/A:304@ND1
1 atom, 1 residue, 1 model selected
> select add #13/M:2@MG
2 atoms, 2 residues, 1 model selected
> distance #13/A:304@ND1 #13/M:2@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/A HIS 304 ND1
and /M MG 2 MG: 2.6Å
> select #13/A:328@NE2
1 atom, 1 residue, 1 model selected
> select add #13/M:2@MG
2 atoms, 2 residues, 1 model selected
> distance #13/A:328@NE2 #13/M:2@MG
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/A HIS 328 NE2
and /M MG 2 MG: 2.0Å
> select clear
> select #13/A:305@ND1
1 atom, 1 residue, 1 model selected
> select add #13/K:3@OP2
2 atoms, 2 residues, 1 model selected
> distance #13/A:305@ND1 #13/K:3@OP2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/A HIS 305 ND1
and /K DA 3 OP2: 3.2Å
> select #13/K:3@O5'
1 atom, 1 residue, 1 model selected
> select add #13/A:280@NH1
2 atoms, 2 residues, 1 model selected
> distance #13/K:3@O5' #13/A:280@NH1
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/K DA 3 O5'
and /A ARG 280 NH1: 2.8Å
> select #13/K:3@OP2
1 atom, 1 residue, 1 model selected
> select add #13/A:280@NH2
2 atoms, 2 residues, 1 model selected
> distance #13/K:3@OP2 #13/A:280@NH2
Distance between halfcleaved_HNH_center_main_model_temp2.pdb #13/K DA 3 OP2
and /A ARG 280 NH2: 2.4Å
> select add #11
8 pseudobonds, 2 models selected
> color sel dim gray
> show #!2 models
> hide #!2 models
> show #!4 models
> unsel
Unknown command: unsel
> select
179387 atoms, 183813 bonds, 57 pseudobonds, 19979 residues, 49 models selected
> select clear
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_0p8.tif" width 1984 height
> 1210 supersample 3
> show #!2 models
> hide #!4 models
> hide #!11 models
> select #2/E:31@O
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select clear
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_1fsj.tif" width 1984 height
> 1210 supersample 3
> lighting soft
> show #!4 models
> hide #!2 models
> lighting full
> lighting simple
> lighting full
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> show #!2 models
> hide #!4 models
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/structure/HNH/HNH_cat_1fsj.tif" width 1984 height
> 1210 supersample 3
> hide #!2 models
> show #!4 models
> hide #!4 models
> show #!4 models
> volume #4 level 0.09
> volume #4 level 0.1
> volume #4 level 0.95
> volume #4 level 0.095
> volume #4 level 0.09
> volume #4 level 0.08
> volume #4 level 0.09
> select #13/K:6
22 atoms, 24 bonds, 1 residue, 1 model selected
> show #13/L atoms
> select clear
> show #13/L,J atoms
> select clear
> save "/Users/zxc755/OneDrive - University of Copenhagen/Type
> I-F_HNH/Manuscript/figures/chimera_session.cxs"
===== Log before crash end =====
OpenGL version: 4.1 ATI-6.1.13
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 2069.80.3.0.0 (iBridge: 22.16.13060.0.0,0)
OS Loader Version: 582~3311
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 6 days, 20 hours, 9 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-019
Option ROM Version: 113-D32206U1-019
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Odyssey G70B:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H1AK500000
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
biopython: 1.84
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
DiffFit: 0.2
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
fsspec: 2024.6.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
joblib: 1.4.2
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
mpmath: 1.3.0
mrcfile: 1.5.1
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scikit-learn: 1.5.1
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
sympy: 1.13.0
tables: 3.8.0
tcia-utils: 1.5.1
threadpoolctl: 3.5.0
tifffile: 2024.1.30
tinyarray: 1.2.4
torch: 2.2.2
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 8 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 8 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
