Opened 7 months ago
Closed 7 months ago
#17175 closed defect (duplicate)
Similar Structures: 'NoneType' object has no attribute 'hits'
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sessions | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. > open > "C:\\\Users\\\jiang\\\Desktop\\\TAAR348\\\structure\\\TAAR348_spermine_model\\\TAAR348_pocket > interaction.cxs" Log from Tue Mar 11 15:52:08 2025UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. > open C:/Users/jiang/Desktop/interface.cxs Log from Tue Mar 11 14:31:07 2025 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > C:\\\Users\\\jiang\\\Desktop\\\TAAR348\\\structure\\\TAAR348_spermine_model\\\TAAR348-coot-12.pdb Chain information for TAAR348-coot-12.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available N | No description available R | No description available S | No description available > set bgColor white > hide atoms > select /R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > color #1 #7096ffff > ribbon style width 1.3 thick 0.3 > select clear > select ::name="SPE" 14 atoms, 13 bonds, 1 residue, 1 model selected > show sel atoms > color sel yellow > color sel byhetero > save C:/Users/jiang/Desktop/interface.cxs includeMaps true ——— End of log from Tue Mar 11 14:31:07 2025 ——— opened ChimeraX session > open > C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/TAAR348-coot-12.pdb Chain information for TAAR348-coot-12.pdb #2 --- Chain | Description A | No description available B | No description available C | No description available N | No description available R | No description available S | No description available > hide sel atoms > select add #2 9832 atoms, 10040 bonds, 3 pseudobonds, 1272 residues, 3 models selected > select add #1 19636 atoms, 20054 bonds, 6 pseudobonds, 2542 residues, 4 models selected > hide #!1 models > select subtract #1 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > hide sel atoms > show sel cartoons > hide sel cartoons > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > show #!1 models > select add #1 12041 atoms, 12303 bonds, 4 pseudobonds, 1557 residues, 4 models selected > show sel cartoons > hide sel cartoons > show sel cartoons > select clear > hide cartoons > select #1/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select add #1 12041 atoms, 12303 bonds, 4 pseudobonds, 1557 residues, 4 models selected > select add #2 19636 atoms, 20054 bonds, 6 pseudobonds, 2542 residues, 4 models selected > select clear > color #2 #7096ffff > select add #1 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > select add #2 19636 atoms, 20054 bonds, 6 pseudobonds, 2542 residues, 4 models selected > hide #!1 models > hide #!2 models > show #!1 models > show #!2 models > hide #!1 models > ui windowfill toggle [Repeated 1 time(s)] > ribbon style width 1.3 thick 0.3 > select clear > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 atoms > color (#!2 & sel) yellow > color (#!2 & sel) byhetero > select sel :< 5 322 atoms, 316 bonds, 34 residues, 2 models selected > show sel & #!2 atoms > style sel & #!2 stick Changed 161 atom styles > color (#!2 & sel) byhetero > hide sel & #!2 atoms > show sel & #!2 atoms > hide sel & #!2 cartoons > select clear > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > hide #!2 models > show #!1 models > color #1 #7096ff50 > show #!2 models > hide #!1 models > hide #!2 models > show #!2 models > hide #!2 atoms > hide #!2 models > show #!2 models > show #!2 atoms > style #!2 stick Changed 9818 atom styles > hide #!2 atoms > hide #!2 cartoons > select #2/N 964 atoms, 986 bonds, 127 residues, 1 model selected > show sel cartoons > color #2 #7096ffff > show sel cartoons > show sel atoms > hide sel atoms > hide sel cartoons > select add #2 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > show sel cartoons > hide sel cartoons > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select clear > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > select add #2 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 atoms > color (#!2 & sel) yellow > color (#!2 & sel) byhetero > select sel :< 5 322 atoms, 316 bonds, 34 residues, 2 models selected > show sel & #!2 atoms > color (#!2 & sel) byhetero > select clear > hide #!2 cartoons > show #!1 models > hide #!1 models > show #!2 cartoons > hide #!2 cartoons > show #!2 cartoons > show #!2 surfaces > hide #!2 surfaces > hide mainchain > hide #!2 models > show #!2 models > hide #!2 cartoons > show #!1 models > hide #!1 models > select add #1 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > select subtract #1 Nothing selected > select add #2 9818 atoms, 10027 bonds, 3 pseudobonds, 1271 residues, 2 models selected > show sidechain > hide sel atoms > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 cartoons > show sel & #!2 atoms > select clear > show sel cartoons [Repeated 1 time(s)] > select clear > show #!2 cartoons > select clear > hide #!2 cartoons > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select clear > select #2/R:401@C06 1 atom, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > select up 2223 atoms, 2276 bonds, 286 residues, 1 model selected > select clear > select #2/R:401@C06 1 atom, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > select sel :< 5 322 atoms, 316 bonds, 34 residues, 2 models selected > show sel & #!2 atoms > show sidechain > hide sidechain > show sel sidechain Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > show sidechain > hide sidechain > name frozen sel sel "sel" is reserved and cannot be redefined > name frozen sel3 sel > show sidechain > show 3 sidechain Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > show #3 sidechain Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > show sel & #!2 atoms > select clear > hide #!2 cartoons > show #!2 cartoons > hide #!2 cartoons > show #!2 cartoons > hide #!2 cartoons > show #!2 cartoons > hide #!2 cartoons > hide #!2 atoms > show #!2 atoms > hide #!2 atoms > show #!2 cartoons > hide #!2 cartoons > undo [Repeated 4 time(s)] > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select clear > graphics silhouettes true > lighting shadows false > lighting flat > show #!1 models > select #2/R:297@OH 1 atom, 1 residue, 1 model selected > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > view sel > select clear > select #2/R:401@C10 1 atom, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > select up 16 atoms, 14 bonds, 2 residues, 1 model selected > select up 28 atoms, 28 bonds, 2 residues, 2 models selected > select add #2/R:112@CG 29 atoms, 28 bonds, 3 residues, 2 models selected > select up 36 atoms, 35 bonds, 3 residues, 2 models selected > view sel > select clear > lighting flat > lighting soft > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > lighting flat > lighting full > lighting flat > lighting soft > lighting full > lighting soft > lighting full > lighting flat > hide cartoons > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > color #1 #770099ff > color #1 #7096ffff > color #1 #7096ff50 > select #1/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select clear > hide #!1 models > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > show sel cartoons > select clear > select #2/R:275 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 198 atoms, 203 bonds, 26 residues, 2 models selected > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > ui tool show "Side View" > select #2/R:206 8 atoms, 7 bonds, 1 residue, 1 model selected > select #2/R 2223 atoms, 2276 bonds, 1 pseudobond, 286 residues, 2 models selected > color (#!2 & sel) #ffffffff > color (#!2 & sel) #770099ff > color (#!2 & sel) #7096ffff > color (#!2 & sel) #7096ff02 > color (#!2 & sel) #7096ff14 > color (#!2 & sel) #7096ffc8 > select clear > undo [Repeated 7 time(s)] > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > select sel :< 5 322 atoms, 316 bonds, 34 residues, 2 models selected > ui tool show "Render/Select by Attribute" No attribute chosen for rendering > volume appearance brain No volumes specified > volume appearance airways No volumes specified > volume projectionMode 2d-xyz No volumes specified > ui mousemode right "mark center" > ui mousemode right "mark surface" > ui mousemode right "mark plane" > ui mousemode right "mark maximum" > ui mousemode right "mark center" > select clear > save "C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/pocket > interaction.png" width 3000 height 1785 supersample 4 transparentBackground > true > save > "C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/TAAR348_pocket > interaction.cxs" includeMaps true ——— End of log from Tue Mar 11 15:52:08 2025 ——— opened ChimeraX session > hide #!2 atoms > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 atoms > ui tool show "Show Sequence Viewer" > sequence chain #1/R #2/R Alignment identifier is 1 > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected 1 [ID: 1] region 2 chains [239] RMSD: 0.000 > select #1/R:277,289 #2/R:277,289 46 atoms, 46 bonds, 4 residues, 2 models selected 1 [ID: 1] region 2 chains [239] + 1 other block RMSD: 0.000 > show sel & #!2 atoms > select clear > save "C:/Users/jiang/Desktop/EW motif.cxs" includeMaps true > select add #2/R:277@CD 1 atom, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > ui tool show H-Bonds > hbonds angleSlop 40.0 reveal true 5036 hydrogen bonds found > ui tool show Foldseek > ui tool show H-Bonds > hbonds reveal true 4112 hydrogen bonds found > ui tool show H-Bonds > hbonds sel showDist true reveal true 6 hydrogen bonds found > ui tool show H-Bonds > hbonds sel reveal true 6 hydrogen bonds found > select clear [Repeated 1 time(s)]No visible atoms, bonds, or surfaces selected > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > ui tool show H-Bonds Restriction atom specifier must not be blank > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 14 atoms, 15 bonds, 1 residue, 2 models selected > select add #2/R:277@CD 15 atoms, 15 bonds, 2 residues, 2 models selected > select up 23 atoms, 23 bonds, 2 residues, 2 models selected > ui tool show H-Bonds Restriction atom specifier must not be blank > select clear Drag select of 1 pseudobonds > hide #!2 cartoons > show #!2 cartoons > hide #!2 atoms > show #!2 atoms > hide #!2 atoms > ~hbonds > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 atoms > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected 1 [ID: 1] region 2 chains [239] RMSD: 0.000 > select #1/R:277,289 #2/R:277,289 46 atoms, 46 bonds, 4 residues, 2 models selected 1 [ID: 1] region 2 chains [239] + 1 other block RMSD: 0.000 > show sel & #!2 atoms > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > ui tool show H-Bonds > hbonds sel reveal true 6 hydrogen bonds found > select clear [Repeated 1 time(s)] > delete pseudobonds sel > hbonds #!2 reveal true 3084 hydrogen bonds found > ~hbonds > select #2/R:277@OE2 1 atom, 1 residue, 1 model selected > ui tool show H-Bonds > hbonds sel reveal true Atom specifier selects no atoms > ui tool show H-Bonds > hbonds sel reveal true Atom specifier selects no atoms > select clear > select #2/R:401@C08 1 atom, 1 residue, 1 model selected > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 14 atoms, 13 bonds, 1 residue, 1 model selected > ui tool show H-Bonds > hbonds sel saltOnly true reveal true 4 hydrogen bonds found > select #2/R:277@CD 1 atom, 1 residue, 1 model selected > select clear > ~hbonds > select #2/R:277@CD 1 atom, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > ui tool show H-Bonds > hbonds sel saltOnly true reveal true 2 hydrogen bonds found > select #2/R:289@NE1 1 atom, 1 residue, 1 model selected > select up 14 atoms, 15 bonds, 1 residue, 2 models selected > hbonds sel reveal true 4 hydrogen bonds found > ~hbonds > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > hbonds sel reveal true 6 hydrogen bonds found > interfaces select & ~solvent Missing or invalid "atoms" argument: invalid atoms specifier > interfaces select & ~solvent Missing or invalid "atoms" argument: invalid atoms specifier > select clear > ~hbonds > ui mousemode right distance > select #2/R:277@OE2 1 atom, 1 residue, 1 model selected > select #2/R:401@N04 1 atom, 1 residue, 1 model selected > select add #2/R:277@OE2 2 atoms, 2 residues, 1 model selected > ui mousemode right distance [Repeated 1 time(s)] > ui mousemode right translate > select clear > select #2/R:277@OE2 1 atom, 1 residue, 1 model selected > ui mousemode right translate > ui mousemode right select > select clear > select #2/R:277@OE2 1 atom, 1 residue, 1 model selected > select #2/R:401@N04 1 atom, 1 residue, 1 model selected > select clear > select #2/R:277@OE1 1 atom, 1 residue, 1 model selected > select up 9 atoms, 8 bonds, 1 residue, 2 models selected > hbonds sel reveal true 6 hydrogen bonds found > select clear > delete pseudobonds sel > ui mousemode right select > select clear > delete pseudobonds sel > ui tool show "Side View" > hide #!2 atoms > select ::name="SPE" 28 atoms, 26 bonds, 2 residues, 2 models selected > show sel & #!2 atoms > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected > select #1/R:277 #2/R:277 18 atoms, 16 bonds, 2 residues, 2 models selected 1 [ID: 1] region 2 chains [239] RMSD: 0.000 > select #1/R:277,289 #2/R:277,289 46 atoms, 46 bonds, 2 pseudobonds, 4 residues, 3 models selected 1 [ID: 1] region 2 chains [239] + 1 other block RMSD: 0.000 > show sel & #!2 atoms > select clear > graphics silhouettes false > graphics silhouettes true > lighting shadows true intensity 0.5 > lighting flat > lighting soft > lighting full > lighting flat > lighting full > lighting shadows false > graphics silhouettes false > graphics silhouettes true > lighting shadows true > lighting flat > lighting full > lighting soft > lighting simple > lighting soft > lighting full > lighting flat > save "C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/EW > motif.cxs" includeMaps true Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\tool.py", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\info.py", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\\__init__.py", line 37, in run_provider providers.run_provider(session, name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 56, in run_provider what(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 38, in _file_save show_save_file_dialog(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core_formats\\__init__.py", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. > save > C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/EWmotif.cxs Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\tool.py", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\info.py", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\\__init__.py", line 37, in run_provider providers.run_provider(session, name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 56, in run_provider what(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 38, in _file_save show_save_file_dialog(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core_formats\\__init__.py", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. > save > C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/EWmotif.png > width 3000 height 2098 supersample 4 transparentBackground true > save > C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/EWmotif.cxs Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\tool.py", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\info.py", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\\__init__.py", line 37, in run_provider providers.run_provider(session, name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 56, in run_provider what(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 38, in _file_save show_save_file_dialog(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core_formats\\__init__.py", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. > save C:/Users/jiang/Desktop/TAAR348/structure/TAAR348_spermine_model/EW.cxs Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\tool.py", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\info.py", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\\__init__.py", line 37, in run_provider providers.run_provider(session, name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 56, in run_provider what(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 38, in _file_save show_save_file_dialog(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core_formats\\__init__.py", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. > save C:/Users/jiang/Desktop/EWmotif.cxs Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 322, in process data = sm.take_snapshot(obj, session, self.state_flags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\tools.py", line 278, in take_snapshot if not tool_inst.SESSION_SAVE: ^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 395, in SESSION_SAVE return len(self.hits) > 0 ^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\similarstructures\gui.py", line 101, in hits return self.results.hits ^^^^^^^^^^^^^^^^^ AttributeError: 'NoneType' object has no attribute 'hits' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 297, in discovery self.processed[key] = self.process(obj, parents) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 329, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\tool.py", line 170, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\info.py", line 397, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\\__init__.py", line 37, in run_provider providers.run_provider(session, name) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 56, in run_provider what(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\toolbar\providers.py", line 38, in _file_save show_save_file_dialog(session) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 138, in show_save_file_dialog _dlg.display(session, **kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\dialog.py", line 62, in display run(session, cmd) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3213, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\save_command\cmd.py", line 101, in provider_save saver_info.save(session, path, **provider_kw) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core_formats\\__init__.py", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 1051, in save session.save(output, version=version, include_maps=include_maps) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 741, in save mgr.discovery(self._state_containers) File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0>: Error while saving session data for 'tools' -> <chimerax.core.tools.Tools object at 0x0000012BAA771CD0> ValueError: error processing: 'tools' -> : Error while saving session data for 'tools' -> File "D:\jiang\software\chimeraX\ChimeraX 1.9\bin\Lib\site- packages\chimerax\core\session.py", line 301, in discovery raise ValueError( See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 560.94 OpenGL renderer: NVIDIA GeForce RTX 4060 Laptop GPU/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.4 Locale: zh_CN.cp936 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: windows Manufacturer: LENOVO Model: 83DF OS: Microsoft Windows 11 家庭中文版 (Build 26100) Memory: 34,141,495,296 MaxProcessMemory: 137,438,953,344 CPU: 32 Intel(R) Core(TM) i9-14900HX OSLanguage: zh-CN Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2024.8.30 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.5 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pywin32: 306 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 WMI: 1.5.1
Change History (2)
comment:1 by , 7 months ago
Component: | Unassigned → Sessions |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Similar Structures: 'NoneType' object has no attribute 'hits' |
comment:2 by , 7 months ago
Resolution: | → duplicate |
---|---|
Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
Fixed several months ago. Saving a session with Similar Structures tool shown but no search done.