![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 months ago
Closed 7 months ago
#17118 closed defect (fixed)
Graphics crash after 100 sequence alignment panels shown
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | pett | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00000001ffab4840 (most recent call first):
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 111 in make_current
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 491 in make_current
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 64 in _check_opengl
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/graphics.py", line 56 in event
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 516 in __init__
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 200 in build
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 700 in init
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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"modelCode" : "MacBookPro17,1",
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"procLaunch" : "2025-03-18 16:25:33.3761 +0100",
"procStartAbsTime" : 31176784624,
"procExitAbsTime" : 31255304721,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.5.app\/Contents\/MacOS\/ChimeraX",
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"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "4867AB37-3462-B712-10CF-B05185E4905D",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "8C78F2BE-8FAB-4810-AE77-1C3352323B88",
"wakeTime" : 14,
"sleepWakeUUID" : "58F73DA6-EB67-4E0D-8049-29982613D721",
"sip" : "enabled",
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"termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"ChimeraX","byPid":3157},
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===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jiale/Downloads/cryosparc_P342_J992_011_volume_map.mrc
Opened cryosparc_P342_J992_011_volume_map.mrc as #1, grid size 432,432,432,
pixel 0.851, shown at level 0.0184, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J993_005_volume_map.mrc
Opened cryosparc_P342_J993_005_volume_map.mrc as #2, grid size 432,432,432,
pixel 0.851, shown at level 0.0221, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J991_008_volume_map.mrc
Opened cryosparc_P342_J991_008_volume_map.mrc as #3, grid size 432,432,432,
pixel 0.851, shown at level 0.0214, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume #1 level 0.07425
> volume #2 level 0.06703
> volume #3 level 0.05323
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> volume #4 level 0.1077
> volume #4 level 0.1295
> save /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J990.mrc
> models #4
> close
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J857.mrc
Opened 24-12-05-CompMap-J857.mrc as #1, grid size 432,432,432, pixel 0.851,
shown at level 0.0326, step 2, values float32
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J946.mrc
Opened 24-12-05-CompMap-J946.mrc as #2, grid size 432,432,432, pixel 0.851,
shown at level 0.0338, step 2, values float32
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J956.mrc
Opened 24-12-05-CompMap-J956.mrc as #3, grid size 432,432,432, pixel 0.851,
shown at level 0.0348, step 2, values float32
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J990.mrc
Opened 24-12-05-CompMap-J990.mrc as #4, grid size 432,432,432, pixel 0.851,
shown at level 0.0344, step 2, values float32
> volume all step 1
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #!3 models
> hide #!2 models
> volume #1 level 0.156
> volume all level 0.15
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!3 models
> hide #!1 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> volume #4 level 0.1325
> volume all level 0.13
> volume all level 0.14
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!2 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> hide #!2 models
> show #!3 models
> volume #3 level 0.1383
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!2 models
> hide #!3 models
> show #!1 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!1 models
> hide #!2 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> close #4
> close
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_00_00347_volume.mrc
Opened cryosparc_P342_J971_class_00_00347_volume.mrc as #1, grid size
128,128,128, pixel 2.87, shown at level 0.142, step 1, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_01_00347_volume.mrc
Opened cryosparc_P342_J971_class_01_00347_volume.mrc as #2, grid size
128,128,128, pixel 2.87, shown at level 0.155, step 1, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_02_00347_volume.mrc
Opened cryosparc_P342_J971_class_02_00347_volume.mrc as #3, grid size
128,128,128, pixel 2.87, shown at level 0.148, step 1, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_03_00347_volume.mrc
Opened cryosparc_P342_J971_class_03_00347_volume.mrc as #4, grid size
128,128,128, pixel 2.87, shown at level 0.152, step 1, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_05_00347_volume.mrc
Opened cryosparc_P342_J971_class_05_00347_volume.mrc as #5, grid size
128,128,128, pixel 2.87, shown at level 0.155, step 1, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J971_class_04_00347_volume.mrc
Opened cryosparc_P342_J971_class_04_00347_volume.mrc as #6, grid size
128,128,128, pixel 2.87, shown at level 0.155, step 1, values float32
> tile
6 models tiled
> volume all level 0.14
> volume all level 0.3
> volume all level 0.4
> volume all level 0.5
> close #1
> close #3
> close #5
> close
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J857.mrc
Opened 24-12-05-CompMap-J857.mrc as #1, grid size 432,432,432, pixel 0.851,
shown at level 0.0326, step 2, values float32
> volume #1 step 1
> volume #1 level 0.161
> open /Users/jiale/Downloads/cryosparc_P342_J997_005_volume_map.mrc
Opened cryosparc_P342_J997_005_volume_map.mrc as #2, grid size 432,432,432,
pixel 0.851, shown at level 0.0126, step 2, values float32
> volume #2 step 1
> hide #!1 models
> volume #2 level 0.04474
> close
> open /Users/jiale/Downloads/cryosparc_P342_J995_010_volume_map.mrc
Opened cryosparc_P342_J995_010_volume_map.mrc as #1, grid size 432,432,432,
pixel 0.851, shown at level 0.0234, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J998_007_volume_map.mrc
Opened cryosparc_P342_J998_007_volume_map.mrc as #2, grid size 432,432,432,
pixel 0.851, shown at level 0.018, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume maximum #1,2
Opened volume maximum as #3, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> volume #3 level 0.1448
> close #3
> show #!2 models
> volume #2 level 0.1428
> close #2
> close
> open /Users/jiale/Downloads/cryosparc_P342_J999_006_volume_map.mrc
Opened cryosparc_P342_J999_006_volume_map.mrc as #1, grid size 432,432,432,
pixel 0.851, shown at level 0.0115, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J1000_008_volume_map.mrc
Opened cryosparc_P342_J1000_008_volume_map.mrc as #2, grid size 432,432,432,
pixel 0.851, shown at level 0.0102, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J1001_004_volume_map.mrc
Opened cryosparc_P342_J1001_004_volume_map.mrc as #3, grid size 432,432,432,
pixel 0.851, shown at level 0.0114, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> volume #4 level 0.02604
> volume #4 level 0.04435
> volume #4 level 0.05825
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J990.mrc
Opened 24-12-05-CompMap-J990.mrc as #5, grid size 432,432,432, pixel 0.851,
shown at level 0.0344, step 2, values float32
> volume #5 step 1
> volume #5 level 0.08967
> hide #!4 models
> volume #5 level 0.1173
> volume #5 level 0.1333
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> volume #4 level 0.06772
> volume #4 level 0.06077
> volume #5 level 0.12
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> show #!5 models
> hide #!4 models
> open /Volumes/pool-schulman-
> em1/Jiale/Phenix/E2Vproject/RealSpaceRefine_8/ARIH2-L3T3-dock1-deepEM_real_space_refined_006_real_space_refined_008.cif
Summary of feedback from opening /Volumes/pool-schulman-
em1/Jiale/Phenix/E2Vproject/RealSpaceRefine_8/ARIH2-L3T3-dock1-deepEM_real_space_refined_006_real_space_refined_008.cif
---
warnings | Skipping chem_comp category: Missing column 'type' near line 1351
Missing entity information. Treating each chain as a separate entity.
Bad residue range for struct_conf "19" near line 161
Bad residue range for struct_conf "41" near line 183
Bad residue range for struct_conf "72" near line 214
Bad residue range for struct_conf "73" near line 215
Bad residue range for struct_conf "77" near line 219
5 messages similar to the above omitted
Invalid residue range for struct_conf "118": invalid chain "N", near line 260
Invalid residue range for struct_conf "119": invalid chain "N", near line 261
Invalid residue range for struct_conf "120": invalid chain "N", near line 262
Invalid residue range for struct_conf "121": invalid chain "R", near line 263
Invalid residue range for struct_conf "122": invalid chain "R", near line 265
Invalid sheet range for struct_sheet_range "E 1" near line 1285
Invalid sheet range for struct_sheet_range "E 2" near line 1286
Invalid sheet range for struct_sheet_range "L 1": invalid chain "N", near line
1302
Invalid sheet range for struct_sheet_range "L 2": invalid chain "N", near line
1303
Invalid sheet range for struct_sheet_range "L 3": invalid chain "N", near line
1304
1 messages similar to the above omitted
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Skipping chem_comp category: Missing column 'type' near line 22023
Chain information for
ARIH2-L3T3-dock1-deepEM_real_space_refined_006_real_space_refined_008.cif #6
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
N | No description available
R | No description available
> open /Volumes/pool-schulman-
> em1/Jiale/Phenix/E2Vproject/RealSpaceRefine_8/ARIH2-L3T3-dock1-deepEM_real_space_refined_006_real_space_refined_008.pdb
Chain information for
ARIH2-L3T3-dock1-deepEM_real_space_refined_006_real_space_refined_008.pdb #7
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
N | No description available
R | No description available
> close #6
> hide atoms
> show cartoons
> hide #!5 models
> close
> open /Users/jiale/Downloads/J990/output/output.cif
Summary of feedback from opening /Users/jiale/Downloads/J990/output/output.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output.cif #1
---
Chain | Description
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Da | No description available
Db | No description available
Dc | No description available
Dd | No description available
De | No description available
Df | No description available
Dg | No description available
Dh | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Fa | No description available
Fb | No description available
Fc | No description available
Fd | No description available
Fe | No description available
Ga | No description available
Gb | No description available
Gc | No description available
Ha | No description available
Hb | No description available
Hc | No description available
Hd | No description available
He | No description available
Hf | No description available
Ia | No description available
Ib | No description available
Ic | No description available
Id | No description available
> hide atoms
> show cartoons
> close
> open /Users/jiale/Downloads/Model-Angelo-J990/output/output_raw.cif
Summary of feedback from opening /Users/jiale/Downloads/Model-
Angelo-J990/output/output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output_raw.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 Al | No description available
A2 | No description available
A3 | No description available
A4 | No description available
A5 DT Df Dh E3 EG ER Eo Eu | No description available
A6 | No description available
A7 | No description available
A8 | No description available
A9 AP | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
Aj | No description available
Ak | No description available
Am | No description available
An | No description available
Ao | No description available
Ap | No description available
Aq | No description available
Ar | No description available
As | No description available
At | No description available
Au | No description available
Av | No description available
Aw | No description available
Ax | No description available
Ay | No description available
Az | No description available
B | No description available
B0 | No description available
B1 | No description available
B2 | No description available
B3 | No description available
B4 | No description available
B5 | No description available
B6 | No description available
B7 | No description available
B8 | No description available
B9 | No description available
BA | No description available
BB | No description available
BC | No description available
BD | No description available
BE | No description available
BF | No description available
BG | No description available
BH | No description available
BI | No description available
BJ | No description available
BK | No description available
BL | No description available
BM | No description available
BN | No description available
BO | No description available
BP | No description available
BQ | No description available
BR | No description available
BS | No description available
BT | No description available
BU | No description available
BV | No description available
BW | No description available
BX | No description available
BY | No description available
BZ | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Bd | No description available
Be | No description available
Bf Dj Dt Dx Ek | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
Bk | No description available
Bl | No description available
Bm | No description available
Bn | No description available
Bo | No description available
Bp | No description available
Bq | No description available
Br | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
Bw | No description available
Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
C1 | No description available
C2 | No description available
C3 | No description available
C4 | No description available
C5 | No description available
C6 | No description available
C7 | No description available
C8 | No description available
C9 | No description available
CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 | No description available
D1 Ey | No description available
D2 D8 E5 EN Ea Ee Ej | No description available
D3 | No description available
D4 | No description available
D5 Dn | No description available
D6 Dr | No description available
D7 DY De | No description available
D9 | No description available
DA | No description available
DB | No description available
DC | No description available
DD | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DK Dg Ep | No description available
DL | No description available
DM | No description available
DN EX | No description available
DO Ec | No description available
DP EO | No description available
DQ | No description available
DR EZ | No description available
DS Di E7 | No description available
DU | No description available
DV Db | No description available
DW EJ | No description available
DX | No description available
DZ | No description available
Da | No description available
Dc ES Ed | No description available
Dd | No description available
Dk E6 | No description available
Dl | No description available
Dm Dv | No description available
Do EL Ex | No description available
Dp | No description available
Dq | No description available
Ds | No description available
Du | No description available
Dw | No description available
Dy | No description available
Dz | No description available
E | No description available
E0 EF Eg Et | No description available
E1 | No description available
E2 | No description available
E4 | No description available
E8 | No description available
EA | No description available
EB | No description available
EC | No description available
ED | No description available
EE Eh | No description available
EH | No description available
EI | No description available
EK | No description available
EM | No description available
EP Em | No description available
EQ | No description available
ET | No description available
EU | No description available
EV | No description available
EW Ei | No description available
EY Eq | No description available
Eb | No description available
Ef | No description available
El | No description available
En | No description available
Er | No description available
Es | No description available
Ev | No description available
Ew | No description available
Ez | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> open /Users/jiale/Desktop/ARIH2-model-building/24-12-05-CompMap-J990.mrc
Opened 24-12-05-CompMap-J990.mrc as #2, grid size 432,432,432, pixel 0.851,
shown at level 0.0344, step 2, values float32
> volume #2 step 1
> volume #2 level 0.1206
> lighting soft
> lighting simple
> color #2 #b2b2b29c models
> close
> open /Users/jiale/Downloads/cryosparc_P342_J924_map_sharp.mrc
Opened cryosparc_P342_J924_map_sharp.mrc as #1, grid size 432,432,432, pixel
0.851, shown at level 0.000572, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J933_map_sharp.mrc
Opened cryosparc_P342_J933_map_sharp.mrc as #2, grid size 432,432,432, pixel
0.851, shown at level 0.000632, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J935_map_sharp.mrc
Opened cryosparc_P342_J935_map_sharp.mrc as #3, grid size 432,432,432, pixel
0.851, shown at level 0.000618, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume #1 level 0.174
> volume #2 level 0.1468
> volume #3 level 0.1007
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> save /Users/jiale/Desktop/ARIH2-model-
> building/24-12-05-CompMap-J857_EMhanced.mrc models #4
> close #4
> close
> open /Users/jiale/Downloads/cryosparc_P342_J950_map_sharp.mrc
Opened cryosparc_P342_J950_map_sharp.mrc as #1, grid size 432,432,432, pixel
0.851, shown at level 0.000666, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J954_map_sharp.mrc
Opened cryosparc_P342_J954_map_sharp.mrc as #2, grid size 432,432,432, pixel
0.851, shown at level 0.000649, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J955_map_sharp.mrc
Opened cryosparc_P342_J955_map_sharp.mrc as #3, grid size 432,432,432, pixel
0.851, shown at level 0.000556, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume #1 level 0.08998
> volume #2 level 0.06243
> volume #3 level 0.06534
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> save /Users/jiale/Desktop/ARIH2-model-
> building/24-12-05-CompMap-J946_EMhanced.mrc models #4
> close
> open /Users/jiale/Downloads/cryosparc_P342_J973_map_sharp.mrc
Opened cryosparc_P342_J973_map_sharp.mrc as #1, grid size 432,432,432, pixel
0.851, shown at level 0.000658, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J974_map_sharp.mrc
Opened cryosparc_P342_J974_map_sharp.mrc as #2, grid size 432,432,432, pixel
0.851, shown at level 0.000561, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J975_map_sharp.mrc
Opened cryosparc_P342_J975_map_sharp.mrc as #3, grid size 432,432,432, pixel
0.851, shown at level 0.000544, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume #1 level 0.06099
> volume #2 level 0.07473
> volume #3 level 0.06213
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> save /Users/jiale/Desktop/ARIH2-model-
> building/24-12-05-CompMap-J956_EMhanced.mrc models #4
> close
> open /Users/jiale/Downloads/cryosparc_P342_J991_008_volume_map.mrc
Opened cryosparc_P342_J991_008_volume_map.mrc as #1, grid size 432,432,432,
pixel 0.851, shown at level 0.0214, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J992_011_volume_map.mrc
Opened cryosparc_P342_J992_011_volume_map.mrc as #2, grid size 432,432,432,
pixel 0.851, shown at level 0.0184, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J993_005_volume_map.mrc
Opened cryosparc_P342_J993_005_volume_map.mrc as #3, grid size 432,432,432,
pixel 0.851, shown at level 0.0221, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> close
> open /Users/jiale/Downloads/ModelAngelo_J946/output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/ModelAngelo_J946/output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output_raw.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 AY Ab | No description available
4 | No description available
5 | No description available
6 Dr E0 E7 EH EV Ej En Eu Ex FC FF FK FL FM FS FX | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 | No description available
A2 AC | No description available
A3 | No description available
A4 | No description available
A5 | No description available
A6 | No description available
A7 | No description available
A8 | No description available
A9 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF Cc FE FG FN | No description available
AG | No description available
AH At | No description available
AI EA | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN Ef | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV An Di Dq Ek FU FZ | No description available
AW | No description available
AX | No description available
AZ | No description available
Aa | No description available
Ac | No description available
Ad | No description available
Ae Ay | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
Aj | No description available
Ak | No description available
Al | No description available
Am ED | No description available
Ao | No description available
Ap | No description available
Aq | No description available
Ar | No description available
As | No description available
Au Bn | No description available
Av | No description available
Aw | No description available
Ax CI | No description available
Az | No description available
B | No description available
B0 | No description available
B1 | No description available
B2 | No description available
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B5 | No description available
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B9 | No description available
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BB | No description available
BC | No description available
BD | No description available
BE | No description available
BF | No description available
BG | No description available
BH | No description available
BI | No description available
BJ | No description available
BK | No description available
BL | No description available
BM | No description available
BN | No description available
BO | No description available
BP | No description available
BQ | No description available
BR | No description available
BS | No description available
BT | No description available
BU | No description available
BV | No description available
BW | No description available
BX | No description available
BY | No description available
BZ | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Bd | No description available
Be | No description available
Bf | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
Bk | No description available
Bl | No description available
Bm | No description available
Bo | No description available
Bp | No description available
Bq | No description available
Br | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
Bw | No description available
Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
C1 | No description available
C2 | No description available
C3 EF | No description available
C4 | No description available
C5 | No description available
C6 | No description available
C7 | No description available
C8 | No description available
C9 | No description available
CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 | No description available
D1 Db Dm EN | No description available
D2 Da Dz E9 Ee FB | No description available
D3 D7 Do Dt EL Fc | No description available
D4 Dy Ei FV | No description available
D5 | No description available
D6 | No description available
D8 | No description available
D9 El | No description available
DA | No description available
DB | No description available
DC | No description available
DD | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DK | No description available
DL | No description available
DM | No description available
DN | No description available
DO | No description available
DP | No description available
DQ | No description available
DR | No description available
DS | No description available
DT | No description available
DU | No description available
DV | No description available
DW | No description available
DX | No description available
DY | No description available
DZ | No description available
Dc | No description available
Dd EP | No description available
De E1 Ed | No description available
Df | No description available
Dg | No description available
Dh | No description available
Dj | No description available
Dk E6 Ep | No description available
Dl | No description available
Dn EQ | No description available
Dp | No description available
Ds | No description available
Du | No description available
Dv | No description available
Dw | No description available
Dx | No description available
E | No description available
E2 EU | No description available
E3 | No description available
E4 | No description available
E5 E8 EI Eb Ec | No description available
EB | No description available
EC | No description available
EE | No description available
EG | No description available
EJ | No description available
EK | No description available
EM | No description available
EO | No description available
ER | No description available
ES Fb | No description available
ET Eq FP | No description available
EW | No description available
EX Er Ev FO | No description available
EY | No description available
EZ Fd | No description available
Ea | No description available
Eg | No description available
Eh | No description available
Em | No description available
Eo | No description available
Es | No description available
Et | No description available
Ew | No description available
Ey | No description available
Ez | No description available
F | No description available
FA | No description available
FD | No description available
FH FT | No description available
FI | No description available
FJ | No description available
FQ | No description available
FR | No description available
FW | No description available
FY | No description available
Fa | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> close
> open /Users/jiale/Downloads/cryosparc_P342_J1003_map_sharp.mrc
Opened cryosparc_P342_J1003_map_sharp.mrc as #1, grid size 432,432,432, pixel
0.851, shown at level 0.000507, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J1004_map_sharp.mrc
Opened cryosparc_P342_J1004_map_sharp.mrc as #2, grid size 432,432,432, pixel
0.851, shown at level 0.000606, step 2, values float32
> open /Users/jiale/Downloads/cryosparc_P342_J1005_map_sharp.mrc
Opened cryosparc_P342_J1005_map_sharp.mrc as #3, grid size 432,432,432, pixel
0.851, shown at level 0.000543, step 2, values float32
> volume #1 step 1
> volume #2 step 1
> volume #3 step 1
> volume #1 level 0.03767
> volume #2 level 0.04073
> volume #3 level 0.05777
> volume maximum #1,2,3
Opened volume maximum as #4, grid size 432,432,432, pixel 0.851, shown at step
1, values float32
> save /Users/jiale/Desktop/ARIH2-model-
> building/24-12-05-CompMap-J990_EMhanced.mrc models #4
> close
> open /Users/jiale/Downloads/J857_EMhanced/J857_EMhanced_output.cif
Summary of feedback from opening
/Users/jiale/Downloads/J857_EMhanced/J857_EMhanced_output.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J857_EMhanced_output.cif #1
---
Chain | Description
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Bd | No description available
Be | No description available
Bf | No description available
Ca | No description available
Cb | No description available
Cc Cf Cg | No description available
Cd | No description available
Ce | No description available
Da | No description available
Db | No description available
Dc | No description available
Dd | No description available
De | No description available
Df | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Fa | No description available
Fb | No description available
Fc Fd Ff Fh Fj | No description available
Fe | No description available
Fg | No description available
Fi | No description available
Fk | No description available
Ga | No description available
Ha | No description available
Hb | No description available
Hc | No description available
Hd | No description available
He | No description available
> close
> open /Users/jiale/Downloads/J857_EMhanced/J857_EMhanced_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J857_EMhanced/J857_EMhanced_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J857_EMhanced_output_raw.cif #1
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A A2 Ai Aw Bb Ca n | No description available
A0 Bo | No description available
A1 | No description available
A3 | No description available
A4 | No description available
A5 | No description available
A6 | No description available
A7 GD | No description available
A8 Ap BT DS Dg E9 F9 FE FL FQ Fd Fj G2 G8 GA GE GH GJ GO GP GT Gm H1 H4 H5 H8 H9 HF HH HI HJ HM HO HQ HU HZ Ha Hd Hi Ho Hp Hr Hw IC IE IM IP IQ IR IV IX Ia Ic Ii Il J e | No description available
A9 | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS R | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab FF Fp Hf | No description available
Ac | No description available
Ad Fe | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Aj Fs Hs Hv | No description available
Ak Cs b f | No description available
Al | No description available
Am | No description available
An BB | No description available
Ao | No description available
Aq | No description available
Ar | No description available
As | No description available
At | No description available
Au | No description available
Av | No description available
Ax | No description available
Ay | No description available
Az CQ | No description available
B | No description available
B0 | No description available
B1 | No description available
B2 | No description available
B3 | No description available
B4 | No description available
B5 | No description available
B6 | No description available
B7 a | No description available
B8 BJ | No description available
B9 | No description available
BA FY Fy H0 HA HR Ht ID IL Ig Ik | No description available
BC Bg | No description available
BD CA H7 HK Hk IH IU IY | No description available
BE | No description available
BF | No description available
BG | No description available
BH | No description available
BI CB | No description available
BK | No description available
BL Dh | No description available
BM | No description available
BN | No description available
BO | No description available
BP | No description available
BQ | No description available
BR | No description available
BS | No description available
BU FU GK | No description available
BV | No description available
BW | No description available
BX | No description available
BY | No description available
BZ Bf | No description available
Ba | No description available
Bc | No description available
Bd | No description available
Be | No description available
Bh | No description available
Bi E4 Fk Gw H2 H6 Hz II IO | No description available
Bj | No description available
Bk | No description available
Bl | No description available
Bm | No description available
Bn | No description available
Bp | No description available
Bq E6 Gj | No description available
Br | No description available
Bs CF | No description available
Bt E5 FV G4 GY Go Gq | No description available
Bu | No description available
Bv | No description available
Bw | No description available
Bx DO I d l | No description available
By | No description available
Bz | No description available
C Fc GZ | No description available
C0 | No description available
C1 | No description available
C2 | No description available
C3 | No description available
C4 | No description available
C5 | No description available
C6 | No description available
C7 | No description available
C8 | No description available
C9 | No description available
CC | No description available
CD | No description available
CE | No description available
CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV GC | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce FC Hn Hx | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 | No description available
D1 | No description available
D2 | No description available
D3 | No description available
D4 | No description available
D5 | No description available
D6 | No description available
D7 | No description available
D8 | No description available
D9 | No description available
DA | No description available
DB | No description available
DC | No description available
DD | No description available
DE DV | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DK | No description available
DL | No description available
DM Hh IZ | No description available
DN Do | No description available
DP | No description available
DQ | No description available
DR | No description available
DT Ff | No description available
DU | No description available
DW | No description available
DX | No description available
DY | No description available
DZ | No description available
Da | No description available
Db | No description available
Dc | No description available
Dd | No description available
De | No description available
Df | No description available
Di | No description available
Dj | No description available
Dk | No description available
Dl | No description available
Dm | No description available
Dn | No description available
Dp | No description available
Dq | No description available
Dr | No description available
Ds | No description available
Dt | No description available
Du | No description available
Dv | No description available
Dw | No description available
Dx | No description available
Dy | No description available
Dz | No description available
E j | No description available
E0 | No description available
E1 | No description available
E2 | No description available
E3 | No description available
E7 | No description available
E8 | No description available
EA | No description available
EB | No description available
EC | No description available
ED | No description available
EE | No description available
EF | No description available
EG | No description available
EH | No description available
EI | No description available
EJ | No description available
EK | No description available
EL T | No description available
EM | No description available
EN | No description available
EO | No description available
EP | No description available
EQ | No description available
ER | No description available
ES | No description available
ET | No description available
EU | No description available
EV | No description available
EW | No description available
EX | No description available
EY | No description available
EZ | No description available
Ea | No description available
Eb | No description available
Ec | No description available
Ed | No description available
Ee | No description available
Ef | No description available
Eg | No description available
Eh | No description available
Ei | No description available
Ej | No description available
Ek | No description available
El | No description available
Em | No description available
En | No description available
Eo | No description available
Ep | No description available
Eq | No description available
Er | No description available
Es | No description available
Et | No description available
Eu | No description available
Ev | No description available
Ew | No description available
Ex | No description available
Ey | No description available
Ez | No description available
F | No description available
F0 | No description available
F1 | No description available
F2 | No description available
F3 G0 | No description available
F4 | No description available
F5 | No description available
F6 FD FR GQ Gr Gt He Hm Y | No description available
F7 | No description available
F8 G6 IJ | No description available
FA | No description available
FB | No description available
FG FP Fq Fz G1 G7 GM HN IF Im | No description available
FH GB GS Gb Gs HT Id | No description available
FI GX | No description available
FJ | No description available
FK G9 Gx | No description available
FM | No description available
FN Fh | No description available
FO | No description available
FS Hb | No description available
FT | No description available
FW G3 | No description available
FX | No description available
FZ | No description available
Fa | No description available
Fb Fi Fu Hc | No description available
Fg | No description available
Fl GU Gl HC HV HW IW Ie | No description available
Fm | No description available
Fn Gi Gy HL IB | No description available
Fo GF | No description available
Fr Gg HE Hl | No description available
Ft | No description available
Fv | No description available
Fw | No description available
Fx | No description available
G | No description available
G5 | No description available
GG | No description available
GI | No description available
GL HX | No description available
GN | No description available
GR | No description available
GV | No description available
GW | No description available
Ga | No description available
Gc | No description available
Gd | No description available
Ge | No description available
Gf | No description available
Gh | No description available
Gk | No description available
Gn Hj IG IK In | No description available
Gp | No description available
Gu | No description available
Gv | No description available
Gz | No description available
H | No description available
H3 IA | No description available
HB | No description available
HD | No description available
HG | No description available
HP | No description available
HS | No description available
HY | No description available
Hg | No description available
Hq | No description available
Hu | No description available
Hy | No description available
IN | No description available
IS | No description available
IT | No description available
Ib | No description available
If | No description available
Ih | No description available
Ij | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
S | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Z | No description available
c | No description available
g | No description available
h | No description available
i p | No description available
k | No description available
m | No description available
o | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> color #1 #009051ff
> color #1 #ebebebff
> open /Users/jiale/Downloads/J857/J857_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J857/J857_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J857_output_raw.cif #2
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 | No description available
A2 | No description available
A3 | No description available
A4 | No description available
A5 | No description available
A6 Bc | No description available
A7 Ba | No description available
A8 | No description available
A9 V | No description available
AA | No description available
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AI | No description available
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AL | No description available
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AN | No description available
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AR Ay | No description available
AS | No description available
AT | No description available
AU | No description available
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AX | No description available
AY | No description available
AZ | No description available
Aa EX Ez Fp | No description available
Ab GL | No description available
Ac GJ | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
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Al BX | No description available
Am | No description available
An | No description available
Ao | No description available
Ap | No description available
Aq | No description available
Ar | No description available
As | No description available
At ED EQ F2 FS Fj Fy | No description available
Au E2 EF EZ FM | No description available
Av | No description available
Aw | No description available
Ax | No description available
Az | No description available
B BY | No description available
B0 | No description available
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BM E0 EB F4 FU | No description available
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BT | No description available
BU | No description available
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BZ | No description available
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Be | No description available
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Bi | No description available
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Bl | No description available
Bm | No description available
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Bp | No description available
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Br | No description available
Bs | No description available
Bt FN | No description available
Bu | No description available
Bv EV | No description available
Bw | No description available
Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
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CD | No description available
CE | No description available
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CG | No description available
CH | No description available
CI | No description available
CJ | No description available
CK E1 | No description available
CL | No description available
CM | No description available
CN | No description available
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CP | No description available
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CR | No description available
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CT | No description available
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CW | No description available
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CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
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Cl | No description available
Cm | No description available
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Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 FE FL GK GM | No description available
D1 Ev GG | No description available
D2 Du Dx E7 E9 Eh Em Eo Et Ew F5 FG FH FI FP FQ FR FT FX FY Fb Fk GH U | No description available
D3 | No description available
D4 EJ F9 Fh | No description available
D5 EA Eu Fx | No description available
D6 | No description available
D7 E3 Fn Fz GA | No description available
D8 | No description available
D9 FA | No description available
DA | No description available
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Di | No description available
Dj | No description available
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Dy | No description available
Dz Fr | No description available
E | No description available
E4 Fm Fv | No description available
E5 | No description available
E6 FW | No description available
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EE | No description available
EG El | No description available
EH Ex F7 FC Fe GE | No description available
EI FK FV | No description available
EK | No description available
EL F3 | No description available
EM Ed Fg Fu GB | No description available
EN | No description available
EO | No description available
EP EW Ee F6 Fc | No description available
ER F1 Ft | No description available
ES Es | No description available
ET | No description available
EU | No description available
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Ek | No description available
En F0 | No description available
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Ey | No description available
F | No description available
F8 FJ FZ | No description available
FB GN GO | No description available
FD | No description available
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Fd | No description available
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Fq | No description available
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Fw | No description available
G | No description available
GC | No description available
GD | No description available
GF GI | No description available
H | No description available
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R w | No description available
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t | No description available
u | No description available
v | No description available
x | No description available
y | No description available
z | No description available
> hide atoms
> show cartoons
> hide #2 models
> show #2 models
> hide #1 models
> open /Users/jiale/Downloads/J990/J990_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J990/J990_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J990_output_raw.cif #3
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 Al | No description available
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A3 | No description available
A4 | No description available
A5 DT Df Dh E3 EG ER Eo Eu | No description available
A6 | No description available
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A9 AP | No description available
AA | No description available
AB | No description available
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AM | No description available
AN | No description available
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AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
AZ | No description available
Aa | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Ae | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
Aj | No description available
Ak | No description available
Am | No description available
An | No description available
Ao | No description available
Ap | No description available
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Ar | No description available
As | No description available
At | No description available
Au | No description available
Av | No description available
Aw | No description available
Ax | No description available
Ay | No description available
Az | No description available
B | No description available
B0 | No description available
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B9 | No description available
BA | No description available
BB | No description available
BC | No description available
BD | No description available
BE | No description available
BF | No description available
BG | No description available
BH | No description available
BI | No description available
BJ | No description available
BK | No description available
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BM | No description available
BN | No description available
BO | No description available
BP | No description available
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BX | No description available
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BZ | No description available
Ba | No description available
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Bc | No description available
Bd | No description available
Be | No description available
Bf Dj Dt Dx Ek | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
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Bl | No description available
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Br | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
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Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
C1 | No description available
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CA | No description available
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CD | No description available
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CF | No description available
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CH | No description available
CI | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
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CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
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Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
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Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 | No description available
D1 Ey | No description available
D2 D8 E5 EN Ea Ee Ej | No description available
D3 | No description available
D4 | No description available
D5 Dn | No description available
D6 Dr | No description available
D7 DY De | No description available
D9 | No description available
DA | No description available
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DK Dg Ep | No description available
DL | No description available
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DN EX | No description available
DO Ec | No description available
DP EO | No description available
DQ | No description available
DR EZ | No description available
DS Di E7 | No description available
DU | No description available
DV Db | No description available
DW EJ | No description available
DX | No description available
DZ | No description available
Da | No description available
Dc ES Ed | No description available
Dd | No description available
Dk E6 | No description available
Dl | No description available
Dm Dv | No description available
Do EL Ex | No description available
Dp | No description available
Dq | No description available
Ds | No description available
Du | No description available
Dw | No description available
Dy | No description available
Dz | No description available
E | No description available
E0 EF Eg Et | No description available
E1 | No description available
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E8 | No description available
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ED | No description available
EE Eh | No description available
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EK | No description available
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EP Em | No description available
EQ | No description available
ET | No description available
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EW Ei | No description available
EY Eq | No description available
Eb | No description available
Ef | No description available
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a | No description available
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t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide #2-3 atoms
> show #2-3 cartoons
> hide #2 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> open /Users/jiale/Downloads/J946/J946_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J946/J946_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J946_output_raw.cif #4
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 AY Ab | No description available
4 | No description available
5 | No description available
6 Dr E0 E7 EH EV Ej En Eu Ex FC FF FK FL FM FS FX | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 | No description available
A2 AC | No description available
A3 | No description available
A4 | No description available
A5 | No description available
A6 | No description available
A7 | No description available
A8 | No description available
A9 | No description available
AA | No description available
AB | No description available
AD | No description available
AE | No description available
AF Cc FE FG FN | No description available
AG | No description available
AH At | No description available
AI EA | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN Ef | No description available
AO | No description available
AP | No description available
AQ | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV An Di Dq Ek FU FZ | No description available
AW | No description available
AX | No description available
AZ | No description available
Aa | No description available
Ac | No description available
Ad | No description available
Ae Ay | No description available
Af | No description available
Ag | No description available
Ah | No description available
Ai | No description available
Aj | No description available
Ak | No description available
Al | No description available
Am ED | No description available
Ao | No description available
Ap | No description available
Aq | No description available
Ar | No description available
As | No description available
Au Bn | No description available
Av | No description available
Aw | No description available
Ax CI | No description available
Az | No description available
B | No description available
B0 | No description available
B1 | No description available
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B3 | No description available
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B5 | No description available
B6 | No description available
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B8 | No description available
B9 | No description available
BA | No description available
BB | No description available
BC | No description available
BD | No description available
BE | No description available
BF | No description available
BG | No description available
BH | No description available
BI | No description available
BJ | No description available
BK | No description available
BL | No description available
BM | No description available
BN | No description available
BO | No description available
BP | No description available
BQ | No description available
BR | No description available
BS | No description available
BT | No description available
BU | No description available
BV | No description available
BW | No description available
BX | No description available
BY | No description available
BZ | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Bd | No description available
Be | No description available
Bf | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
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Bl | No description available
Bm | No description available
Bo | No description available
Bp | No description available
Bq | No description available
Br | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
Bw | No description available
Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
C1 | No description available
C2 | No description available
C3 EF | No description available
C4 | No description available
C5 | No description available
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C8 | No description available
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CA | No description available
CB | No description available
CC | No description available
CD | No description available
CE | No description available
CF | No description available
CG | No description available
CH | No description available
CJ | No description available
CK | No description available
CL | No description available
CM | No description available
CN | No description available
CO | No description available
CP | No description available
CQ | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 | No description available
D1 Db Dm EN | No description available
D2 Da Dz E9 Ee FB | No description available
D3 D7 Do Dt EL Fc | No description available
D4 Dy Ei FV | No description available
D5 | No description available
D6 | No description available
D8 | No description available
D9 El | No description available
DA | No description available
DB | No description available
DC | No description available
DD | No description available
DE | No description available
DF | No description available
DG | No description available
DH | No description available
DI | No description available
DJ | No description available
DK | No description available
DL | No description available
DM | No description available
DN | No description available
DO | No description available
DP | No description available
DQ | No description available
DR | No description available
DS | No description available
DT | No description available
DU | No description available
DV | No description available
DW | No description available
DX | No description available
DY | No description available
DZ | No description available
Dc | No description available
Dd EP | No description available
De E1 Ed | No description available
Df | No description available
Dg | No description available
Dh | No description available
Dj | No description available
Dk E6 Ep | No description available
Dl | No description available
Dn EQ | No description available
Dp | No description available
Ds | No description available
Du | No description available
Dv | No description available
Dw | No description available
Dx | No description available
E | No description available
E2 EU | No description available
E3 | No description available
E4 | No description available
E5 E8 EI Eb Ec | No description available
EB | No description available
EC | No description available
EE | No description available
EG | No description available
EJ | No description available
EK | No description available
EM | No description available
EO | No description available
ER | No description available
ES Fb | No description available
ET Eq FP | No description available
EW | No description available
EX Er Ev FO | No description available
EY | No description available
EZ Fd | No description available
Ea | No description available
Eg | No description available
Eh | No description available
Em | No description available
Eo | No description available
Es | No description available
Et | No description available
Ew | No description available
Ey | No description available
Ez | No description available
F | No description available
FA | No description available
FD | No description available
FH FT | No description available
FI | No description available
FJ | No description available
FQ | No description available
FR | No description available
FW | No description available
FY | No description available
Fa | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
q | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide #3-4 atoms
> show #3-4 cartoons
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #3 models
> open /Users/jiale/Downloads/J956/J956_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J956/J956_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J956_output_raw.cif #5
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 Dl | No description available
A1 | No description available
A2 | No description available
A3 | No description available
A4 | No description available
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Ad Aj | No description available
Ae | No description available
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Ag | No description available
Ah | No description available
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Ak | No description available
Al | No description available
Am | No description available
An | No description available
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Ap | No description available
Aq Dg Eg | No description available
Ar | No description available
As | No description available
At | No description available
Au | No description available
Av | No description available
Aw | No description available
Ax | No description available
Ay | No description available
Az Bj | No description available
B | No description available
B0 | No description available
B1 | No description available
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B5 | No description available
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BA | No description available
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BE | No description available
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BO Bb | No description available
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BR | No description available
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BY Da EV U | No description available
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Bl | No description available
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Br | No description available
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Bt | No description available
Bu | No description available
Bv | No description available
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By | No description available
Bz | No description available
C | No description available
C0 | No description available
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C4 | No description available
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CY | No description available
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Ca | No description available
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Cd | No description available
Ce | No description available
Cf | No description available
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Ch | No description available
Ci | No description available
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Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz | No description available
D | No description available
D0 EG | No description available
D1 D8 Ez | No description available
D2 EX | No description available
D3 D4 DR DX DY Du ET Ec Ed Ee Ef Ei El Eo Eq Et | No description available
D5 Ds | No description available
D6 DM Dq | No description available
D7 | No description available
D9 ER EU | No description available
DA | No description available
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DN | No description available
DO | No description available
DP | No description available
DQ EM | No description available
DS | No description available
DT | No description available
DU Dv Ey | No description available
DV | No description available
DW | No description available
DZ | No description available
Db | No description available
Dc Dp | No description available
Dd Dh EC | No description available
De | No description available
Df Dx | No description available
Di | No description available
Dj | No description available
Dk | No description available
Dm | No description available
Dn | No description available
Do EK Ej | No description available
Dr EI I | No description available
Dt Dy | No description available
Dw | No description available
Dz | No description available
E | No description available
E0 | No description available
EA | No description available
EB | No description available
ED | No description available
EE | No description available
EF Em | No description available
EH EL EN En | No description available
EJ Eh | No description available
EO | No description available
EP | No description available
EQ | No description available
ES | No description available
EW | No description available
EY | No description available
EZ | No description available
Ea | No description available
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Ek | No description available
Ep Eu | No description available
Er | No description available
Es | No description available
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Ew | No description available
Ex | No description available
F | No description available
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Z | No description available
a | No description available
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r | No description available
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t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide #4-5 atoms
> show #4-5 cartoons
> hide #4 models
> hide #5 models
> show #4 models
> show #3 models
> hide #4 models
> hide #3 models
> show #2 models
> show #3 models
> hide #2 models
> show #5 models
> show #2 models
> hide #3 models
> hide #2 models
> show #3 models
> show #4 models
> hide #5 models
> hide #3 models
> hide #4 models
> open /Users/jiale/Downloads/J956_EMhanced/J956_EMhanced_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J956_EMhanced/J956_EMhanced_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J956_EMhanced_output_raw.cif #6
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
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9 | No description available
A Fb GM X | No description available
A0 | No description available
A1 BH | No description available
A2 Cd | No description available
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A5 | No description available
A6 | No description available
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AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP BV CI D3 D5 D7 E5 E6 EH EV Ek Ep Eu F7 FA FD FE FF FJ FK FO FQ FR FV FW FZ Fa Fc Fd Fe Fi Fl Fo Fs Ft GB GD GE GH GJ GN GP GR a | No description available
AQ | No description available
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AT | No description available
AU | No description available
AV | No description available
AW | No description available
AX | No description available
AY | No description available
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Ab Av | No description available
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Ak BR Fq | No description available
Al B5 | No description available
Am | No description available
An | No description available
Ao | No description available
Ap | No description available
Aq | No description available
Ar | No description available
As | No description available
At | No description available
Au EA Ei FS | No description available
Aw | No description available
Ax | No description available
Ay F2 | No description available
Az | No description available
B C | No description available
B0 | No description available
B1 | No description available
B2 | No description available
B3 | No description available
B4 | No description available
B6 | No description available
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B8 | No description available
B9 | No description available
BA Dy En | No description available
BB | No description available
BC | No description available
BD | No description available
BE | No description available
BF | No description available
BG | No description available
BI | No description available
BJ EQ Eo | No description available
BK | No description available
BL | No description available
BM | No description available
BN | No description available
BO | No description available
BP | No description available
BQ Be CU ED El FX Fk | No description available
BS | No description available
BT | No description available
BU | No description available
BW | No description available
BX | No description available
BY | No description available
BZ | No description available
Ba | No description available
Bb | No description available
Bc | No description available
Bd EG | No description available
Bf | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
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Bl | No description available
Bm | No description available
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Br | No description available
Bs | No description available
Bt | No description available
Bu | No description available
Bv | No description available
Bw | No description available
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By | No description available
Bz | No description available
C0 | No description available
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CE | No description available
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CG | No description available
CH | No description available
CJ | No description available
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CN Dq Fn | No description available
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Ce | No description available
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Ch | No description available
Ci | No description available
Cj D9 Dn Ez FM FT GO | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Cn | No description available
Co | No description available
Cp | No description available
Cq | No description available
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D | No description available
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D1 EI FL Fu Fx | No description available
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D4 E2 E7 EP F0 F5 | No description available
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Dm EL GF | No description available
Do | No description available
Dp | No description available
Dr E8 EC GU | No description available
Ds F6 GL | No description available
Dt E9 Fr GG GQ | No description available
Du | No description available
Dv Dx FC | No description available
Dw | No description available
Dz | No description available
E | No description available
E1 Ey | No description available
E3 Et | No description available
E4 EO EW FY | No description available
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EJ | No description available
EK Eb | No description available
EM EX F3 Fj Fz | No description available
EN Fh GK | No description available
ER Eq F1 | No description available
ES | No description available
ET | No description available
EU | No description available
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Ed F4 | No description available
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Eh FI Fg | No description available
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Ev | No description available
Ew | No description available
Ex | No description available
F | No description available
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FB FP GC | No description available
FH | No description available
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FU | No description available
Ff | No description available
Fm | No description available
Fp | No description available
Fv | No description available
Fw | No description available
Fy | No description available
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o | No description available
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r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> open /Users/jiale/Downloads/J946_EMhanced/J946_EMhanced_output_raw.cif
Summary of feedback from opening
/Users/jiale/Downloads/J946_EMhanced/J946_EMhanced_output_raw.cif
---
warnings | Missing entity information. Treating each chain as a separate entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for J946_EMhanced_output_raw.cif #7
---
Chain | Description
0 | No description available
1 | No description available
2 | No description available
3 | No description available
4 | No description available
5 | No description available
6 | No description available
7 | No description available
8 | No description available
9 | No description available
A | No description available
A0 | No description available
A1 Bu ET En Fb Fq GL Gb Gs | No description available
A2 | No description available
A3 | No description available
A4 FT | No description available
A5 | No description available
A6 AX | No description available
A7 | No description available
A8 EV | No description available
A9 | No description available
AA | No description available
AB | No description available
AC | No description available
AD | No description available
AE | No description available
AF | No description available
AG | No description available
AH | No description available
AI | No description available
AJ | No description available
AK | No description available
AL | No description available
AM | No description available
AN | No description available
AO | No description available
AP | No description available
AQ Am | No description available
AR | No description available
AS | No description available
AT | No description available
AU | No description available
AV | No description available
AW Fe Fs | No description available
AY | No description available
AZ | No description available
Aa Ae BQ q | No description available
Ab | No description available
Ac | No description available
Ad | No description available
Af | No description available
Ag | No description available
Ah Ba | No description available
Ai EY Ei GP Gk d | No description available
Aj | No description available
Ak E1 E2 E5 E6 E7 E8 E9 EP EX Ec Er Es Eu Ev Ey FB FE FG FP FR FW FY Fa Ff Fk Fp Fr GD GF GH GK GM GN GS GT GW GX Ga Gc Gg Gn | No description available
Al | No description available
An Cn | No description available
Ao | No description available
Ap | No description available
Aq BB BP | No description available
Ar | No description available
As | No description available
At | No description available
Au | No description available
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Ay | No description available
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B | No description available
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B5 B9 Bv | No description available
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BA | No description available
BC BO | No description available
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BI | No description available
BJ GB V | No description available
BK | No description available
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BM | No description available
BN EN Eo Ez FS | No description available
BR | No description available
BS | No description available
BT | No description available
BU | No description available
BV | No description available
BW CK | No description available
BX | No description available
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Bb | No description available
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Bd | No description available
Be | No description available
Bf | No description available
Bg | No description available
Bh | No description available
Bi | No description available
Bj | No description available
Bk Ee Ep Fc R | No description available
Bl | No description available
Bm | No description available
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Bo | No description available
Bp | No description available
Bq | No description available
Br | No description available
Bs | No description available
Bt | No description available
Bw | No description available
Bx | No description available
By | No description available
Bz | No description available
C | No description available
C0 | No description available
C1 | No description available
C2 | No description available
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C4 | No description available
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CA | No description available
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CE | No description available
CF | No description available
CG Ge | No description available
CH | No description available
CI | No description available
CJ | No description available
CL | No description available
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CN | No description available
CO | No description available
CP | No description available
CQ FK | No description available
CR | No description available
CS | No description available
CT | No description available
CU | No description available
CV | No description available
CW | No description available
CX | No description available
CY | No description available
CZ | No description available
Ca | No description available
Cb | No description available
Cc | No description available
Cd | No description available
Ce | No description available
Cf | No description available
Cg | No description available
Ch | No description available
Ci | No description available
Cj | No description available
Ck | No description available
Cl | No description available
Cm | No description available
Co | No description available
Cp | No description available
Cq | No description available
Cr | No description available
Cs | No description available
Ct | No description available
Cu FO | No description available
Cv | No description available
Cw | No description available
Cx | No description available
Cy | No description available
Cz DJ FJ GO GQ Gi Gr | No description available
D | No description available
D0 | No description available
D1 | No description available
D2 | No description available
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DA | No description available
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DH | No description available
DI | No description available
DK | No description available
DL | No description available
DM | No description available
DN | No description available
DO | No description available
DP F5 FC GV | No description available
DQ | No description available
DR | No description available
DS | No description available
DT | No description available
DU | No description available
DV | No description available
DW | No description available
DX | No description available
DY | No description available
DZ | No description available
Da | No description available
Db | No description available
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De | No description available
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Dg | No description available
Dh | No description available
Di | No description available
Dj | No description available
Dk | No description available
Dl | No description available
Dm | No description available
Dn | No description available
Do | No description available
Dp | No description available
Dq | No description available
Dr | No description available
Ds | No description available
Dt | No description available
Du | No description available
Dv | No description available
Dw | No description available
Dx | No description available
Dy | No description available
Dz | No description available
E | No description available
E0 | No description available
E3 | No description available
E4 Em Fx GR Gl | No description available
EA | No description available
EB | No description available
EC | No description available
ED | No description available
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EF | No description available
EG | No description available
EH | No description available
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EL | No description available
EM | No description available
EO | No description available
EQ | No description available
ER | No description available
ES | No description available
EU Ea Et GA | No description available
EW FD FI | No description available
EZ | No description available
Eb Eg Fz Gd | No description available
Ed | No description available
Ef | No description available
Eh FA Fg | No description available
Ej FQ Gj | No description available
Ek F0 F7 | No description available
El F6 F9 | No description available
Eq Fh Fn GY | No description available
Ew | No description available
Ex | No description available
F | No description available
F1 | No description available
F2 Fm | No description available
F3 | No description available
F4 | No description available
F8 GI Gf | No description available
FF | No description available
FH | No description available
FL | No description available
FM | No description available
FN FV Fi | No description available
FU FX | No description available
FZ | No description available
Fd | No description available
Fj | No description available
Fl | No description available
Fo | No description available
Ft | No description available
Fu | No description available
Fv | No description available
Fw | No description available
Fy | No description available
G | No description available
GC | No description available
GE Gp | No description available
GG | No description available
GJ | No description available
GU | No description available
GZ Gh Gq | No description available
Gm | No description available
Go | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
S | No description available
T | No description available
U | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
a | No description available
b | No description available
c | No description available
e | No description available
f | No description available
g | No description available
h | No description available
i | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n | No description available
o | No description available
p | No description available
r | No description available
s | No description available
t | No description available
u | No description available
v | No description available
w | No description available
x | No description available
y | No description available
z | No description available
> hide #6-7 atoms
> show #6-7 cartoons
> hide #7 models
> show #7 models
> hide #6 models
> hide #7 models
> show #6 models
> show #4 models
> hide #6 models
> show #3 models
> hide #4 models
> show #4 models
> hide #3 models
> hide #4 models
> show #5 models
> show #4 models
> hide #5 models
> show #7 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #4 models
> show #4 models
> hide #7 models
> show #7 models
> hide #7 models
> select add #4
22121 atoms, 22155 bonds, 2955 residues, 1 model selected
Alignment identifier is 4/A
Alignment identifier is 4/B
Alignment identifier is 4/C
Alignment identifier is 4/D
Alignment identifier is 4/E
Alignment identifier is 4/F
Alignment identifier is 4/G
Alignment identifier is 4/H
Alignment identifier is 4/I
Alignment identifier is 4/J
Alignment identifier is 4/K
Alignment identifier is 4/L
Alignment identifier is 4/M
Alignment identifier is 4/N
Alignment identifier is 4/O
Alignment identifier is 4/P
Alignment identifier is 4/Q
Alignment identifier is 4/R
Alignment identifier is 4/S
Alignment identifier is 4/T
Alignment identifier is 4/U
Alignment identifier is 4/V
Alignment identifier is 4/W
Alignment identifier is 4/X
Alignment identifier is 4/Y
Alignment identifier is 4/Z
Alignment identifier is 4/a
Alignment identifier is 4/b
Alignment identifier is 4/c
Alignment identifier is 4/d
Alignment identifier is 4/e
Alignment identifier is 4/f
Alignment identifier is 4/g
Alignment identifier is 4/h
Alignment identifier is 4/i
Alignment identifier is 4/j
Alignment identifier is 4/k
Alignment identifier is 4/l
Alignment identifier is 4/m
Alignment identifier is 4/n
Alignment identifier is 4/o
Alignment identifier is 4/p
Alignment identifier is 4/q
Alignment identifier is 4/r
Alignment identifier is 4/s
Alignment identifier is 4/t
Alignment identifier is 4/u
Alignment identifier is 4/v
Alignment identifier is 4/w
Alignment identifier is 4/x
Alignment identifier is 4/y
Alignment identifier is 4/z
Alignment identifier is 4/0
Alignment identifier is 4/1
Alignment identifier is 4/2
Alignment identifier is 1
Alignment identifier is 4/4
Alignment identifier is 4/5
Alignment identifier is 2
Alignment identifier is 4/7
Alignment identifier is 4/8
Alignment identifier is 4/9
Alignment identifier is 4/AA
Alignment identifier is 4/AB
Alignment identifier is 3
Alignment identifier is 4/AD
Alignment identifier is 4/AE
Alignment identifier is 4
Alignment identifier is 4/AG
Alignment identifier is 5
Alignment identifier is 6
Alignment identifier is 4/AJ
Alignment identifier is 4/AK
Alignment identifier is 4/AL
Alignment identifier is 4/AM
Alignment identifier is 7
Alignment identifier is 4/AO
Alignment identifier is 4/AP
Alignment identifier is 4/AQ
Alignment identifier is 4/AR
Alignment identifier is 4/AS
Alignment identifier is 4/AT
Alignment identifier is 4/AU
Alignment identifier is 8
Alignment identifier is 4/AW
Alignment identifier is 4/AX
Alignment identifier is 4/AZ
Alignment identifier is 4/Aa
Alignment identifier is 4/Ac
Alignment identifier is 4/Ad
Alignment identifier is 9
Alignment identifier is 4/Af
Alignment identifier is 4/Ag
Alignment identifier is 4/Ah
Alignment identifier is 4/Ai
Alignment identifier is 4/Aj
Alignment identifier is 4/Ak
Alignment identifier is 4/Al
Alignment identifier is 10
Alignment identifier is 4/Ao
Alignment identifier is 4/Ap
Alignment identifier is 4/Aq
Alignment identifier is 4/Ar
Alignment identifier is 4/As
Alignment identifier is 11
Alignment identifier is 4/Av
Alignment identifier is 4/Aw
Alignment identifier is 12
Alignment identifier is 4/Az
Alignment identifier is 4/A0
Alignment identifier is 4/A1
Alignment identifier is 4/A3
Alignment identifier is 4/A4
Alignment identifier is 4/A5
Alignment identifier is 4/A6
Alignment identifier is 4/A7
Alignment identifier is 4/A8
Alignment identifier is 4/A9
Alignment identifier is 4/BA
Alignment identifier is 4/BB
Alignment identifier is 4/BC
Alignment identifier is 4/BD
Alignment identifier is 4/BE
Alignment identifier is 4/BF
Alignment identifier is 4/BG
Alignment identifier is 4/BH
Alignment identifier is 4/BI
Alignment identifier is 4/BJ
Alignment identifier is 4/BK
Alignment identifier is 4/BL
Alignment identifier is 4/BM
Alignment identifier is 4/BN
Alignment identifier is 4/BO
Alignment identifier is 4/BP
Alignment identifier is 4/BQ
Alignment identifier is 4/BR
Alignment identifier is 4/BS
Alignment identifier is 4/BT
Alignment identifier is 4/BU
Alignment identifier is 4/BV
Alignment identifier is 4/BW
Alignment identifier is 4/BX
Alignment identifier is 4/BY
Alignment identifier is 4/BZ
Alignment identifier is 4/Ba
Alignment identifier is 4/Bb
Alignment identifier is 4/Bc
Alignment identifier is 4/Bd
Alignment identifier is 4/Be
Alignment identifier is 4/Bf
Alignment identifier is 4/Bg
Alignment identifier is 4/Bh
Alignment identifier is 4/Bi
Alignment identifier is 4/Bj
Alignment identifier is 4/Bk
Alignment identifier is 4/Bl
Alignment identifier is 4/Bm
Alignment identifier is 4/Bo
Alignment identifier is 4/Bp
Alignment identifier is 4/Bq
Alignment identifier is 4/Br
Alignment identifier is 4/Bs
Alignment identifier is 4/Bt
Alignment identifier is 4/Bu
Alignment identifier is 4/Bv
Alignment identifier is 4/Bw
Alignment identifier is 4/Bx
Alignment identifier is 4/By
Alignment identifier is 4/Bz
Alignment identifier is 4/B0
Alignment identifier is 4/B1
Alignment identifier is 4/B2
Alignment identifier is 4/B3
Alignment identifier is 4/B4
Alignment identifier is 4/B5
Alignment identifier is 4/B6
Alignment identifier is 4/B7
Alignment identifier is 4/B8
Alignment identifier is 4/B9
Alignment identifier is 4/CA
Alignment identifier is 4/CB
Alignment identifier is 4/CC
Alignment identifier is 4/CD
Alignment identifier is 4/CE
Alignment identifier is 4/CF
Alignment identifier is 4/CG
Alignment identifier is 4/CH
Alignment identifier is 4/CJ
Alignment identifier is 4/CK
Alignment identifier is 4/CL
Alignment identifier is 4/CM
Alignment identifier is 4/CN
Alignment identifier is 4/CO
Alignment identifier is 4/CP
Alignment identifier is 4/CQ
Alignment identifier is 4/CR
Alignment identifier is 4/CS
Alignment identifier is 4/CT
Alignment identifier is 4/CU
Alignment identifier is 4/CV
Alignment identifier is 4/CW
Alignment identifier is 4/CX
Alignment identifier is 4/CY
Alignment identifier is 4/CZ
Alignment identifier is 4/Ca
Alignment identifier is 4/Cb
Alignment identifier is 4/Cd
Alignment identifier is 4/Ce
Alignment identifier is 4/Cf
Alignment identifier is 4/Cg
Alignment identifier is 4/Ch
Alignment identifier is 4/Ci
Alignment identifier is 4/Cj
Alignment identifier is 4/Ck
Alignment identifier is 4/Cl
Alignment identifier is 4/Cm
Alignment identifier is 4/Cn
Alignment identifier is 4/Co
Alignment identifier is 4/Cp
Alignment identifier is 4/Cq
Alignment identifier is 4/Cr
Alignment identifier is 4/Cs
Alignment identifier is 4/Ct
Alignment identifier is 4/Cu
Alignment identifier is 4/Cv
Alignment identifier is 4/Cw
Alignment identifier is 4/Cx
Alignment identifier is 4/Cy
Alignment identifier is 4/Cz
Alignment identifier is 4/C0
Alignment identifier is 4/C1
Alignment identifier is 4/C2
Alignment identifier is 13
Alignment identifier is 4/C4
Alignment identifier is 4/C5
Alignment identifier is 4/C6
Alignment identifier is 4/C7
Alignment identifier is 4/C8
Alignment identifier is 4/C9
Alignment identifier is 4/DA
Alignment identifier is 4/DB
Alignment identifier is 4/DC
Alignment identifier is 4/DD
Alignment identifier is 4/DE
Alignment identifier is 4/DF
Alignment identifier is 4/DG
Alignment identifier is 4/DH
Alignment identifier is 4/DI
Alignment identifier is 4/DJ
Alignment identifier is 4/DK
Alignment identifier is 4/DL
Alignment identifier is 4/DM
Alignment identifier is 4/DN
Alignment identifier is 4/DO
Alignment identifier is 4/DP
Alignment identifier is 4/DQ
Alignment identifier is 4/DR
Alignment identifier is 4/DS
Alignment identifier is 4/DT
Alignment identifier is 4/DU
Alignment identifier is 4/DV
Alignment identifier is 4/DW
Alignment identifier is 4/DX
Alignment identifier is 4/DY
Alignment identifier is 4/DZ
Alignment identifier is 14
Alignment identifier is 15
Alignment identifier is 4/Dc
Alignment identifier is 16
Alignment identifier is 17
Alignment identifier is 4/Df
Alignment identifier is 4/Dg
Alignment identifier is 4/Dh
Alignment identifier is 4/Dj
Alignment identifier is 18
Alignment identifier is 4/Dl
Alignment identifier is 19
Alignment identifier is 20
Alignment identifier is 4/Dp
Alignment identifier is 4/Ds
Alignment identifier is 4/Du
Alignment identifier is 4/Dv
Alignment identifier is 4/Dw
Alignment identifier is 4/Dx
Alignment identifier is 21
Alignment identifier is 4/D0
Alignment identifier is 4/D5
Alignment identifier is 4/D6
Alignment identifier is 4/D8
Alignment identifier is 22
Alignment identifier is 4/EB
Alignment identifier is 4/EC
Alignment identifier is 4/EE
Alignment identifier is 4/EG
Alignment identifier is 23
Alignment identifier is 4/EJ
Alignment identifier is 4/EK
Alignment identifier is 4/EM
Alignment identifier is 4/EO
Alignment identifier is 4/ER
Alignment identifier is 24
Alignment identifier is 25
Alignment identifier is 26
Alignment identifier is 4/EW
Alignment identifier is 27
Alignment identifier is 4/EY
Alignment identifier is 28
Alignment identifier is 4/Ea
Alignment identifier is 4/Eg
Alignment identifier is 4/Eh
Alignment identifier is 4/Em
Alignment identifier is 4/Eo
Alignment identifier is 4/Es
Alignment identifier is 4/Et
Alignment identifier is 4/Ew
Alignment identifier is 4/Ey
Alignment identifier is 4/Ez
Alignment identifier is 4/E3
Alignment identifier is 4/E4
Alignment identifier is 4/FA
Alignment identifier is 4/FD
Alignment identifier is 29
Alignment identifier is 4/FI
Alignment identifier is 4/FJ
Alignment identifier is 4/FQ
Alignment identifier is 4/FR
Alignment identifier is 4/FW
Alignment identifier is 4/FY
Alignment identifier is 4/Fa
Window position QRect(670,4244 100x30) outside any known screen, using primary
screen
An OpenGL graphics error occurred. Most often this is caused by a graphics
driver bug. The only way to fix such bugs is to update your graphics driver.
Redrawing graphics is now stopped to avoid a continuous stream of error
messages. To restart graphics use the command "graphics restart" after
changing the settings that caused the error.
Frame buffer invalid size 1732, 16470
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw
self._draw_scene(camera, drawings)
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 224, in _draw_scene
offscreen.start(r)
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1739, in start
r.push_framebuffer(fb)
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 710, in push_framebuffer
fb.activate()
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2267, in activate
fbo = self.framebuffer_id
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2263, in framebuffer_id
self._fbo = fbo = self._create_framebuffer()
File
"/Applications/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2093, in _create_framebuffer
raise OpenGLError('Frame buffer invalid size %d, %d' % (w,h))
chimerax.graphics.opengl.OpenGLError: Frame buffer invalid size 1732, 16470
===== Log before crash end =====
Log:
Startup Messages
---
warning | QCoreApplication::postEvent: Unexpected null receiver
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: MYDC2LL/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 37 minutes, 18 seconds
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2415Q:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 30.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (5)
comment:1 by , 7 months ago
| Component: | Unassigned → Graphics |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in graphics driver |
comment:2 by , 7 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
comment:3 by , 7 months ago
| Summary: | Crash in graphics driver → Graphics crash, macOS 15.3.2, M1 GPU |
|---|
comment:4 by , 7 months ago
| Resolution: | can't reproduce |
|---|---|
| Status: | closed → reopened |
| Summary: | Graphics crash, macOS 15.3.2, M1 GPU → Graphics crash after 100 sequence alignment panels shown |
Now I see ChimeraX resized the main window to 1732, 16470, apparently showing a ton of sequence alignments judging by the Log output
Alignment identifier is 4/A Alignment identifier is 4/B Alignment identifier is 4/C Alignment identifier is 4/D ...
Then ChimeraX crashed trying to render to such a large graphics pane.
I thought Eric fixed this situation where a hundred sequence alignments make the ChimeraX window too tall.
comment:5 by , 7 months ago
| Cc: | added |
|---|---|
| Resolution: | → fixed |
| Status: | reopened → closed |
I see, the crash happened in ChimeraX 1.5 before this problem was solved.
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Rarely see graphics crashes on Mac ARM GPUs. User had largish atomic models and maps open but nothing stands out that would cause the graphics driver failure.