DiffFit: torch.cuda.OutOfMemoryError

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-6.8.0-52-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/prasadlab/Downloads/Viper3_refine007_1-60_oligomer_legacy.pdb.gz
> format pdb

Summary of feedback from opening
/home/prasadlab/Downloads/Viper3_refine007_1-60_oligomer_legacy.pdb.gz  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
711063 messages similar to the above omitted  
  
Chain information for Viper3_refine007_1-60_oligomer_legacy.pdb.gz #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> open /home/prasadlab/anish/P15/W3/cryosparc_P15_J78_004_volume_map_T3.mrc

Opened cryosparc_P15_J78_004_volume_map_T3.mrc as #2, grid size 980,980,980,
pixel 1.08, shown at step 1, values float32  

> hide #!2 models

> show #!2 models

> hide #1 models

> show #1 models

> volume #2 region 0,0,0,979,979,979 step 4

[Repeated 1 time(s)]

> volume #2 step 1

> hide #1 models

> show #1 models

> ui mousemode right "translate selected models"

> hide #!2 models

> select add #2

3 models selected  

> select add #2

3 models selected  

> show #!2 models

> select add #2

3 models selected  

> select add #1

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select subtract #1

3 models selected  

> select add #1

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select subtract #1

3 models selected  

> select add #2

3 models selected  

> select subtract #2

Nothing selected  

> select add #2

3 models selected  

> select subtract #2

Nothing selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #1

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> hide #!2 models

> show #!2 models

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> view matrix models
> #1,1,0,0,23.911,0,1,0,21.669,0,0,1,59.31,#2,1,0,0,23.911,0,1,0,21.669,0,0,1,59.31

> surface dust #2 size 10.8

> select add #2

723120 atoms, 744540 bonds, 93420 residues, 4 models selected  

> select subtract #1

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select add #2

3 models selected  

> select subtract #2

Nothing selected  

> select add #1

723120 atoms, 744540 bonds, 93420 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models #1,1,0,0,252.03,0,1,0,367.21,0,0,1,763.33

> view matrix models #1,1,0,0,454.84,0,1,0,575.78,0,0,1,517.22

> view matrix models #1,1,0,0,561.01,0,1,0,584.44,0,0,1,566.11

> view matrix models #1,1,0,0,570.5,0,1,0,580.1,0,0,1,583.22

> view matrix models #1,1,0,0,563.25,0,1,0,563.78,0,0,1,599.37

> ui tool show DiffFit

loading settings...  
Opened cryosparc_P15_J78_004_volume_map_T3.mrc copy as #3, grid size
980,980,980, pixel 1.08, shown at step 1, values float32  
Opened Viper3_refine007_1-60_oligomer_legacy.pdb.gz map 5 as #3, grid size
415,415,415, pixel 1.08, shown at level 0.103, step 1, values float32  
Traceback (most recent call last):  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/tool.py", line 435, in <lambda>  
button_fit.clicked.connect(lambda: self.single_fit_button_clicked())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/tool.py", line 1725, in single_fit_button_clicked  
self.fit_result) = diff_fit(  
^^^^^^^^^  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/DiffAtomComp.py", line 917, in diff_fit  
loss.backward()  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/torch/_tensor.py", line 522, in backward  
torch.autograd.backward(  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/torch/autograd/__init__.py", line 266, in backward  
Variable._execution_engine.run_backward( # Calls into the C++ engine to run
the backward pass  
torch.cuda.OutOfMemoryError: CUDA out of memory. Tried to allocate 4.18 GiB.
GPU 0 has a total capacity of 47.54 GiB of which 3.86 GiB is free. Including
non-PyTorch memory, this process has 43.66 GiB memory in use. Of the allocated
memory 41.77 GiB is allocated by PyTorch, and 1.57 GiB is reserved by PyTorch
but unallocated. If reserved but unallocated memory is large try setting
PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True to avoid fragmentation. See
documentation for Memory Management
(https://pytorch.org/docs/stable/notes/cuda.html#environment-variables)  
  
torch.cuda.OutOfMemoryError: CUDA out of memory. Tried to allocate 4.18 GiB.
GPU 0 has a total capacity of 47.54 GiB of which 3.86 GiB is free. Including
non-PyTorch memory, this process has 43.66 GiB memory in use. Of the allocated
memory 41.77 GiB is allocated by PyTorch, and 1.57 GiB is reserved by PyTorch
but unallocated. If reserved but unallocated memory is large try setting
PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True to avoid fragmentation. See
documentation for Memory Management
(https://pytorch.org/docs/stable/notes/cuda.html#environment-variables)  
  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/torch/autograd/__init__.py", line 266, in backward  
Variable._execution_engine.run_backward( # Calls into the C++ engine to run
the backward pass  
  
See log for complete Python traceback.  
  
Opened cryosparc_P15_J78_004_volume_map_T3.mrc copy as #4, grid size
980,980,980, pixel 1.08, shown at step 1, values float32  
Traceback (most recent call last):  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/tool.py", line 435, in <lambda>  
button_fit.clicked.connect(lambda: self.single_fit_button_clicked())  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/tool.py", line 1690, in single_fit_button_clicked  
volume_conv_list = self._create_volume_conv_list(vol_copy, smooth_by,
smooth_loops, self.session)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/tool.py", line 1598, in _create_volume_conv_list  
volume_conv_list = conv_volume(volume_conv_list[0],  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/DiffAtomComp.py", line 649, in conv_volume  
volume_conv = F.conv3d(volume_pad, filter)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
torch.cuda.OutOfMemoryError: CUDA out of memory. Tried to allocate 3.51 GiB.
GPU 0 has a total capacity of 47.54 GiB of which 320.88 MiB is free. Including
non-PyTorch memory, this process has 47.21 GiB memory in use. Of the allocated
memory 43.25 GiB is allocated by PyTorch, and 3.64 GiB is reserved by PyTorch
but unallocated. If reserved but unallocated memory is large try setting
PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True to avoid fragmentation. See
documentation for Memory Management
(https://pytorch.org/docs/stable/notes/cuda.html#environment-variables)  
  
torch.cuda.OutOfMemoryError: CUDA out of memory. Tried to allocate 3.51 GiB.
GPU 0 has a total capacity of 47.54 GiB of which 320.88 MiB is free. Including
non-PyTorch memory, this process has 47.21 GiB memory in use. Of the allocated
memory 43.25 GiB is allocated by PyTorch, and 3.64 GiB is reserved by PyTorch
but unallocated. If reserved but unallocated memory is large try setting
PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True to avoid fragmentation. See
documentation for Memory Management
(https://pytorch.org/docs/stable/notes/cuda.html#environment-variables)  
  
File "/home/prasadlab/.local/share/ChimeraX/1.9/lib/python3.11/site-
packages/chimerax/difffit/DiffAtomComp.py", line 649, in conv_volume  
volume_conv = F.conv3d(volume_pad, filter)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 535.183.01
OpenGL renderer: NVIDIA RTX A6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=cinnamon
XDG_SESSION_DESKTOP=cinnamon
XDG_CURRENT_DESKTOP=X-Cinnamon
DISPLAY=:1
Manufacturer: ASUS
Model: System Product Name
OS: Ubuntu 22.04
Architecture: 64bit ELF
Virtual Machine: none
CPU: 128 AMD Ryzen Threadripper PRO 3995WX 64-Cores
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:           251Gi        19Gi       223Gi        69Mi       8.5Gi       229Gi
	Swap:            9Gi       1.2Gi       8.8Gi

Graphics:
	41:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA102GL [RTX A6000] [10de:2230] (rev a1)	
	Subsystem: NVIDIA Corporation GA102GL [RTX A6000] [10de:1459]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    biopython: 1.83
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2024.8.30
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-QScore: 1.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    DiffFit: 0.7.0
    distro: 1.9.0
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    fsspec: 2025.2.0
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    mpmath: 1.3.0
    mrcfile: 1.5.0
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    nvidia-cublas-cu12: 12.1.3.1
    nvidia-cuda-cupti-cu12: 12.1.105
    nvidia-cuda-nvrtc-cu12: 12.1.105
    nvidia-cuda-runtime-cu12: 12.1.105
    nvidia-cudnn-cu12: 8.9.2.26
    nvidia-cufft-cu12: 11.0.2.54
    nvidia-curand-cu12: 10.3.2.106
    nvidia-cusolver-cu12: 11.4.5.107
    nvidia-cusparse-cu12: 12.1.0.106
    nvidia-nccl-cu12: 2.19.3
    nvidia-nvjitlink-cu12: 12.8.61
    nvidia-nvtx-cu12: 12.1.105
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
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