![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 8 months ago
Closed 8 months ago
#17220 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 270000,
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac15,6",
"coalitionID" : 5234,
"osVersion" : {
"train" : "macOS 15.3.2",
"build" : "24D81",
"releaseType" : "User"
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"captureTime" : "2025-03-27 15:55:29.9916 +0100",
"codeSigningMonitor" : 1,
"incident" : "A1145D98-AAAD-49F1-A0BE-650090543F88",
"pid" : 7282,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-03-27 13:23:11.3823 +0100",
"procStartAbsTime" : 6473771878964,
"procExitAbsTime" : 6693088650904,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"98DE0FFC-5840-55AC-BE50-4DB2C0493C29","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "81866301-0A1C-6112-E89F-FE1341120ADC",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"IAAg1AAAINQAAEDUIAAg1AAAINQAAEDUIAAg1AAAINQAAEDUIAAg1A==","atPC":"AAAg1AAAQNQgACDUAAAg1AAAQNQgACDUAAAg1AAAQNQgACDUAAAg1A=="},
"bootSessionUUID" : "F2D4C605-2F82-4F52-A72B-1A960E56376A",
"wakeTime" : 12347,
"sleepWakeUUID" : "E146611A-149A-4524-A310-2EA97A90E45C",
"sip" : "enabled",
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"os_fault" : {"process":"ChimeraX"},
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/noah/Downloads/cryosparc_P252_J1122_003_volume_map.mrc
Opened cryosparc_P252_J1122_003_volume_map.mrc as #1, grid size 128,128,128,
pixel 3.64, shown at level 0.871, step 1, values float32
> volume #1 level 0.4589
> ui tool show "Side View"
> open emdb:52229
Summary of feedback from opening 52229 fetched from emdb
---
note | Fetching map header 52229 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-52229/header/emd-52229.xml
Opened emdb 52229 as #2, grid size 256,256,256, pixel 1.9, shown at level
0.65, step 1, values float32
> hide #!1 models
> show #!1 models
> select add #1
2 models selected
> close #1
> open /Users/noah/Downloads/cryosparc_P252_J1122_003_volume_map.mrc
Opened cryosparc_P252_J1122_003_volume_map.mrc as #1, grid size 128,128,128,
pixel 3.64, shown at level 0.871, step 1, values float32
> select add #1
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99946,0.026595,-0.019206,-2.2899,0.029656,-0.48223,0.87554,165.02,0.014023,-0.87564,-0.48276,481.27
> view matrix models
> #1,0.97922,0.02314,-0.20145,38.069,-0.021473,-0.97605,-0.21649,499.05,-0.20164,0.21632,-0.95527,371.39
> view matrix models
> #1,0.99924,0.0029678,0.038967,-7.9653,0.011331,-0.97628,-0.21621,491.48,0.037401,0.21649,-0.97557,320.08
> view matrix models
> #1,0.99873,-0.036698,0.034654,2.0647,-0.036054,-0.99917,-0.019025,469.9,0.035323,0.017752,-0.99922,370.61
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.99873,-0.036698,0.034654,7.0152,-0.036054,-0.99917,-0.019025,480.55,0.035323,0.017752,-0.99922,448.33
> fitmap #2 inMap #1
Fit map emdb 52229 in map cryosparc_P252_J1122_003_volume_map.mrc using 43251
points
correlation = 0.9112, correlation about mean = -0.03618, overlap = 3.421e+04
steps = 116, shift = 46.1, angle = 8.04 degrees
Position of emdb 52229 (#2) relative to
cryosparc_P252_J1122_003_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.98520480 -0.17124008 0.00695216 29.80088580
-0.17120543 -0.98522104 -0.00531047 518.61873053
0.00775878 0.00404166 -0.99996173 502.07212680
Axis 0.99629431 -0.08593027 0.00369144
Axis point 0.00000000 260.00316208 251.59033255
Rotation angle (degrees) 179.73108364
Shift along axis -13.02122646
> select subtract #1
Nothing selected
> volume #2 level 0.3072
> fitmap #2 inMap #1
Fit map emdb 52229 in map cryosparc_P252_J1122_003_volume_map.mrc using 457150
points
correlation = 0.7256, correlation about mean = 0.2567, overlap = 9.673e+04
steps = 196, shift = 4.4, angle = 2.05 degrees
Position of emdb 52229 (#2) relative to
cryosparc_P252_J1122_003_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.99055264 -0.13713226 -0.00046638 26.08953795
-0.13713228 -0.99055274 -0.00001062 507.54256108
-0.00046052 0.00007448 -0.99999989 503.98900511
Axis 0.99763540 -0.06872809 -0.00023154
Axis point 0.00000000 254.66456111 252.00294798
Rotation angle (degrees) 179.99755635
Shift along axis -8.97127718
> select add #2
3 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.99431,-0.1006,-0.035119,31.104,0.10131,0.99467,0.019053,-37.182,0.033015,-0.022502,0.9992,-27.44
> fitmap #2 inMap #1
Fit map emdb 52229 in map cryosparc_P252_J1122_003_volume_map.mrc using 457150
points
correlation = 0.7484, correlation about mean = 0.003138, overlap = 9.392e+04
steps = 64, shift = 7.59, angle = 3.72 degrees
Position of emdb 52229 (#2) relative to
cryosparc_P252_J1122_003_volume_map.mrc (#1) coordinates:
Matrix rotation and translation
0.97957605 -0.20107281 0.00070032 43.59825832
-0.20107301 -0.97957623 0.00021997 520.19811630
0.00064178 -0.00035629 -0.99999973 478.35376926
Axis -0.99488090 0.10105384 -0.00033712
Axis point 0.00000000 262.34809164 239.13170639
Rotation angle (degrees) 179.98340637
Shift along axis 9.03168192
> select subtract #2
Nothing selected
> volume #2 level 0.4018
> ui mousemode right translate
> hide #!1 models
> show #!1 models
> hide #!2 models
> volume #1 level 0.4357
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> open /Users/noah/Downloads/cryosparc_P253_J720_class_00_00122_volume.mrc
Opened cryosparc_P253_J720_class_00_00122_volume.mrc as #3, grid size
128,128,128, pixel 1.9, shown at level 0.318, step 1, values float32
> hide #!1 models
> hide #!3 models
> show #!3 models
> view
> volume #3 level 0.145
> open /Users/noah/Downloads/cryosparc_P253_J720_class_01_00122_volume.mrc
Opened cryosparc_P253_J720_class_01_00122_volume.mrc as #4, grid size
128,128,128, pixel 1.9, shown at level 0.377, step 1, values float32
> hide #!3 models
> volume #4 level 0.05881
> volume #4 level 0.03611
> open /Users/noah/Downloads/cryosparc_P253_J720_class_02_00122_volume.mrc
Opened cryosparc_P253_J720_class_02_00122_volume.mrc as #5, grid size
128,128,128, pixel 1.9, shown at level 0.357, step 1, values float32
> hide #!4 models
> volume #5 level 0.1572
> open /Users/noah/Downloads/cryosparc_P253_J720_class_03_00122_volume.mrc
Opened cryosparc_P253_J720_class_03_00122_volume.mrc as #6, grid size
128,128,128, pixel 1.9, shown at level 0.319, step 1, values float32
> hide #!5 models
> volume #6 level 0.1895
> open /Users/noah/Downloads/cryosparc_P253_J720_class_04_00122_volume.mrc
Opened cryosparc_P253_J720_class_04_00122_volume.mrc as #7, grid size
128,128,128, pixel 1.9, shown at level 0.356, step 1, values float32
> hide #!6 models
> volume #7 level 0.09611
> open /Users/noah/Downloads/cryosparc_P253_J720_class_05_00122_volume.mrc
Opened cryosparc_P253_J720_class_05_00122_volume.mrc as #8, grid size
128,128,128, pixel 1.9, shown at level 0.319, step 1, values float32
> hide #!7 models
> volume #8 level 0.1444
> open /Users/noah/Downloads/cryosparc_P253_J720_class_06_00122_volume.mrc
Opened cryosparc_P253_J720_class_06_00122_volume.mrc as #9, grid size
128,128,128, pixel 1.9, shown at level 0.321, step 1, values float32
> hide #!8 models
> volume #9 level 0.1263
> open /Users/noah/Downloads/cryosparc_P253_J720_class_07_00122_volume.mrc
Opened cryosparc_P253_J720_class_07_00122_volume.mrc as #10, grid size
128,128,128, pixel 1.9, shown at level 0.379, step 1, values float32
> hide #!9 models
> volume #10 level 0.04584
> open /Users/noah/Downloads/cryosparc_P253_J719_volume_map(1).mrc
Opened cryosparc_P253_J719_volume_map(1).mrc as #11, grid size 128,128,128,
pixel 1.9, shown at level 0.338, step 1, values float32
> hide #!10 models
> volume #11 level 0.1263
> hide #!11 models
> show #!10 models
> show #!9 models
> hide #!10 models
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_00_00122_volume.mrc
Opened cryosparc_P252_J1121_class_00_00122_volume.mrc as #12, grid size
128,128,128, pixel 3.64, shown at level 0.835, step 1, values float32
> close #1-12
> open emdb:52229
Opened emdb 52229 as #1, grid size 256,256,256, pixel 1.9, shown at level
0.65, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_00_00122_volume.mrc
Opened cryosparc_P252_J1121_class_00_00122_volume.mrc as #2, grid size
128,128,128, pixel 3.64, shown at level 0.835, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_01_00122_volume.mrc
Opened cryosparc_P252_J1121_class_01_00122_volume.mrc as #3, grid size
128,128,128, pixel 3.64, shown at level 0.72, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_02_00122_volume.mrc
Opened cryosparc_P252_J1121_class_02_00122_volume.mrc as #4, grid size
128,128,128, pixel 3.64, shown at level 1.06, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_03_00122_volume.mrc
Opened cryosparc_P252_J1121_class_03_00122_volume.mrc as #5, grid size
128,128,128, pixel 3.64, shown at level 0.778, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_04_00122_volume.mrc
Opened cryosparc_P252_J1121_class_04_00122_volume.mrc as #6, grid size
128,128,128, pixel 3.64, shown at level 0.816, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_05_00122_volume.mrc
Opened cryosparc_P252_J1121_class_05_00122_volume.mrc as #7, grid size
128,128,128, pixel 3.64, shown at level 0.807, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_06_00122_volume.mrc
Opened cryosparc_P252_J1121_class_06_00122_volume.mrc as #8, grid size
128,128,128, pixel 3.64, shown at level 0.924, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1121_class_07_00122_volume.mrc
Opened cryosparc_P252_J1121_class_07_00122_volume.mrc as #9, grid size
128,128,128, pixel 3.64, shown at level 0.759, step 1, values float32
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> hide #!1 models
> show #!1 models
> hide #!3 models
> hide #!4 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> hide #!5 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> volume #2 level 0.7263
> hide #!1 models
> volume #2 level 0.5175
> show #!1 models
> fitmap #1 inMap #2
Fit map emdb 52229 in map cryosparc_P252_J1121_class_00_00122_volume.mrc using
43251 points
correlation = 0.915, correlation about mean = 0.1087, overlap = 2.163e+04
steps = 72, shift = 18.8, angle = 0.16 degrees
Position of emdb 52229 (#1) relative to
cryosparc_P252_J1121_class_00_00122_volume.mrc (#2) coordinates:
Matrix rotation and translation
0.99999616 0.00266993 0.00074283 -10.96054555
-0.00267023 0.99999635 0.00040175 -9.55075231
-0.00074176 -0.00040373 0.99999964 -11.89950826
Axis -0.14381280 0.26506177 -0.95344645
Axis point -4612.97341764 3538.87905397 0.00000000
Rotation angle (degrees) 0.16045450
Shift along axis 10.39027129
> ui tool show "Side View"
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!1 models
> show #!3 models
> hide #!2 models
> volume #3 level 0.4852
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!3 models
> show #!4 models
> volume #4 level 0.4134
> show #!5 models
> hide #!4 models
> volume #5 level 0.3461
> show #!6 models
> hide #!5 models
> volume #6 level 0.2178
> show #!7 models
> hide #!6 models
> volume #7 level 0.5112
> show #!8 models
> hide #!7 models
> volume #8 level 0.2145
> show #!9 models
> hide #!8 models
> volume #9 level 0.472
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!9 models
> show #!1 models
> hide #!1 models
> show #!3 models
> hide #!2 models
> volume #3 level 0.4444
> show #!4 models
> hide #!3 models
> show #!6 models
> hide #!4 models
> volume #6 level 0.2422
> show #!7 models
> hide #!6 models
> show #!8 models
> hide #!7 models
> volume #8 level 0.1999
> show #!9 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!1 models
> hide #!9 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> open /Users/noah/Downloads/cryosparc_P252_J1130_class_01_00160_volume.mrc
Opened cryosparc_P252_J1130_class_01_00160_volume.mrc as #10, grid size
128,128,128, pixel 3.95, shown at level 0.695, step 1, values float32
> hide #!2 models
> hide #!3 models
> open /Users/noah/Downloads/cryosparc_P252_J1130_class_02_00160_volume.mrc
Opened cryosparc_P252_J1130_class_02_00160_volume.mrc as #11, grid size
128,128,128, pixel 3.95, shown at level 0.687, step 1, values float32
> hide #!10 models
> volume #11 level 0.8913
> open emdb:21412
Opened emdb 21412 as #12, grid size 128,128,128, pixel 2.2, shown at level
0.19, step 1, values float32
> select add #12
3 models selected
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,129.21,0,1,0,371.3,0,0,1,170.86
> view matrix models #12,1,0,0,271.97,0,1,0,273.07,0,0,1,277.08
> view matrix models #12,1,0,0,255.8,0,1,0,250.63,0,0,1,251.48
> view matrix models #12,1,0,0,253,0,1,0,252.03,0,0,1,251.25
> ui mousemode right "rotate selected models"
> view matrix models
> #12,-0.15962,-0.82825,0.53714,242.22,-0.92398,0.3169,0.21407,241.91,-0.34753,-0.46214,-0.81588,233.88
> view matrix models
> #12,-0.33784,-0.93831,-0.073786,236.17,-0.9403,0.33991,-0.017281,240.43,0.041295,0.063543,-0.99712,239.01
> ui mousemode right "translate selected models"
> view matrix models
> #12,-0.33784,-0.93831,-0.073786,254.46,-0.9403,0.33991,-0.017281,252.72,0.041295,0.063543,-0.99712,239.12
> fitmap #12 inMap #11
Fit map emdb 21412 in map cryosparc_P252_J1130_class_02_00160_volume.mrc using
29801 points
correlation = 0.9256, correlation about mean = 0.2389, overlap = 8945
steps = 68, shift = 4.13, angle = 4.33 degrees
Position of emdb 21412 (#12) relative to
cryosparc_P252_J1130_class_02_00160_volume.mrc (#11) coordinates:
Matrix rotation and translation
-0.32458869 -0.94585408 -0.00149448 251.21041564
-0.94585226 0.32459123 -0.00200958 251.89887310
0.00238587 0.00076127 -0.99999686 242.15046311
Axis 0.58112369 -0.81381516 0.00038346
Axis point 215.36497949 0.00000000 121.34363311
Rotation angle (degrees) 179.86340392
Shift along axis -58.92194312
> select subtract #12
Nothing selected
> ui mousemode right translate
> hide #!11 models
> show #!11 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!12 models
> open /Users/noah/Downloads/cryosparc_P252_J1130_class_03_00160_volume.mrc
Opened cryosparc_P252_J1130_class_03_00160_volume.mrc as #13, grid size
128,128,128, pixel 3.95, shown at level 0.89, step 1, values float32
> hide #!12 models
> hide #!11 models
> volume #13 level 0.1702
> open /Users/noah/Downloads/cryosparc_P252_J1123_002_volume_map.mrc
Opened cryosparc_P252_J1123_002_volume_map.mrc as #14, grid size 208,208,208,
pixel 2.43, shown at level 0.38, step 1, values float32
> hide #!13 models
> show #!13 models
> hide #!14 models
> show #!11 models
> hide #!13 models
> hide #!11 models
> show #!14 models
> volume #14 level 0.2851
> show #!12 models
> fitmap #12 inMap #14
Fit map emdb 21412 in map cryosparc_P252_J1123_002_volume_map.mrc using 29801
points
correlation = 0.9609, correlation about mean = 0.4871, overlap = 6147
steps = 64, shift = 0.604, angle = 0.727 degrees
Position of emdb 21412 (#12) relative to
cryosparc_P252_J1123_002_volume_map.mrc (#14) coordinates:
Matrix rotation and translation
-0.31277619 -0.94982685 -0.00011194 251.13089240
-0.94982685 0.31277620 -0.00007925 251.86008163
0.00011028 0.00008154 -0.99999999 241.54755395
Axis 0.58618457 -0.81017754 -0.00000101
Axis point 216.66889146 0.00000000 120.78565851
Rotation angle (degrees) 179.99214216
Shift along axis -56.84256991
> open /Users/noah/Downloads/cryosparc_P252_J1124_002_volume_map.mrc
Opened cryosparc_P252_J1124_002_volume_map.mrc as #15, grid size 208,208,208,
pixel 2.43, shown at level 0.326, step 1, values float32
> hide #!14 models
> hide #!12 models
> volume #15 level 0.2904
> show #!12 models
> fitmap #12 inMap #15
Fit map emdb 21412 in map cryosparc_P252_J1124_002_volume_map.mrc using 29801
points
correlation = 0.9657, correlation about mean = 0.5395, overlap = 7005
steps = 44, shift = 0.57, angle = 0.112 degrees
Position of emdb 21412 (#12) relative to
cryosparc_P252_J1124_002_volume_map.mrc (#15) coordinates:
Matrix rotation and translation
-0.31092930 -0.95043304 -0.00000722 251.14584571
-0.95043304 0.31092930 0.00003894 251.85710693
-0.00003477 0.00001897 -1.00000000 240.97724001
Axis -0.58696824 0.80960996 0.00001548
Axis point 216.87254930 0.00000000 120.48471909
Rotation angle (degrees) 179.99902515
Shift along axis 56.49511544
> show #!14 models
> hide #!12 models
> hide #!15 models
> show #!15 models
> hide #!14 models
> show #!14 models
> hide #!15 models
> open /Users/noah/Downloads/cryosparc_P252_J1126_002_volume_map.mrc
Opened cryosparc_P252_J1126_002_volume_map.mrc as #16, grid size 208,208,208,
pixel 2.43, shown at level 0.416, step 1, values float32
> hide #!14 models
> ui tool show "Side View"
> view
> volume #16 level 0.1849
> open /Users/noah/Downloads/cryosparc_P252_J1128_002_volume_map.mrc
Opened cryosparc_P252_J1128_002_volume_map.mrc as #17, grid size 208,208,208,
pixel 2.43, shown at level 0.499, step 1, values float32
> hide #!16 models
> volume #17 level 0.1213
> volume #17 level 0.06922
> open /Users/noah/Downloads/cryosparc_P252_J1129_002_volume_map.mrc
Opened cryosparc_P252_J1129_002_volume_map.mrc as #18, grid size 208,208,208,
pixel 2.43, shown at level 0.417, step 1, values float32
> hide #!17 models
> volume #18 level 0.09408
> hide #!18 models
> show #!14 models
> show #!15 models
> hide #!14 models
> hide #!15 models
> close #2-18
> open emdb:21412
Opened emdb 21412 as #2, grid size 128,128,128, pixel 2.2, shown at level
0.19, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_00_00028_volume.mrc
Opened cryosparc_P252_J1103_class_00_00028_volume.mrc as #3, grid size
208,208,208, pixel 2.43, shown at level 0.359, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_01_00028_volume.mrc
Opened cryosparc_P252_J1103_class_01_00028_volume.mrc as #4, grid size
208,208,208, pixel 2.43, shown at level 0.359, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_02_00028_volume.mrc
Opened cryosparc_P252_J1103_class_02_00028_volume.mrc as #5, grid size
208,208,208, pixel 2.43, shown at level 0.403, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_03_00028_volume.mrc
Opened cryosparc_P252_J1103_class_03_00028_volume.mrc as #6, grid size
208,208,208, pixel 2.43, shown at level 0.404, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_04_00028_volume.mrc
Opened cryosparc_P252_J1103_class_04_00028_volume.mrc as #7, grid size
208,208,208, pixel 2.43, shown at level 0.367, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_05_00028_volume.mrc
Opened cryosparc_P252_J1103_class_05_00028_volume.mrc as #8, grid size
208,208,208, pixel 2.43, shown at level 0.425, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_06_00028_volume.mrc
Opened cryosparc_P252_J1103_class_06_00028_volume.mrc as #9, grid size
208,208,208, pixel 2.43, shown at level 0.375, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_07_00028_volume.mrc
Opened cryosparc_P252_J1103_class_07_00028_volume.mrc as #10, grid size
208,208,208, pixel 2.43, shown at level 0.372, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_08_00028_volume.mrc
Opened cryosparc_P252_J1103_class_08_00028_volume.mrc as #11, grid size
208,208,208, pixel 2.43, shown at level 0.373, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_09_00028_volume.mrc
Opened cryosparc_P252_J1103_class_09_00028_volume.mrc as #12, grid size
208,208,208, pixel 2.43, shown at level 0.417, step 1, values float32
> hide #!2 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> volume #3 level 0.05626
> show #!4 models
> hide #!3 models
> volume #4 level 0.1222
> volume #4 level 0.04973
> show #!5 models
> hide #!4 models
> volume #5 level 0.2421
> show #!6 models
> hide #!5 models
> volume #6 level 0.2767
> show #!7 models
> hide #!6 models
> volume #7 level 0.1002
> show #!8 models
> hide #!7 models
> volume #8 level 0.2859
> show #!9 models
> hide #!8 models
> volume #9 level 0.2622
> show #!10 models
> hide #!9 models
> volume #10 level 0.1387
> hide #!10 models
> show #!11 models
> volume #11 level 0.2028
> hide #!11 models
> show #!12 models
> volume #12 level 0.001818
> hide #!12 models
> show #!3 models
> show #!4 models
> hide #!3 models
> show #!5 models
> hide #!4 models
> show #!6 models
> hide #!5 models
> hide #!6 models
> show #!7 models
> hide #!7 models
> show #!9 models
> open /Users/noah/Downloads/cryosparc_P252_J1103_class_00_00028_volume(1).mrc
Opened cryosparc_P252_J1103_class_00_00028_volume(1).mrc as #13, grid size
208,208,208, pixel 2.43, shown at level 0.359, step 1, values float32
> hide #!9 models
> volume #13 level 0.02872
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_00_00028_volume.mrc
Opened cryosparc_P252_J1102_class_00_00028_volume.mrc as #14, grid size
108,108,108, pixel 4.68, shown at level 0.996, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_01_00028_volume.mrc
Opened cryosparc_P252_J1102_class_01_00028_volume.mrc as #15, grid size
108,108,108, pixel 4.68, shown at level 1.05, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_02_00028_volume.mrc
Opened cryosparc_P252_J1102_class_02_00028_volume.mrc as #16, grid size
108,108,108, pixel 4.68, shown at level 1.07, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_03_00028_volume.mrc
Opened cryosparc_P252_J1102_class_03_00028_volume.mrc as #17, grid size
108,108,108, pixel 4.68, shown at level 0.935, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_04_00028_volume.mrc
Opened cryosparc_P252_J1102_class_04_00028_volume.mrc as #18, grid size
108,108,108, pixel 4.68, shown at level 0.952, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_05_00028_volume.mrc
Opened cryosparc_P252_J1102_class_05_00028_volume.mrc as #19, grid size
108,108,108, pixel 4.68, shown at level 0.983, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_06_00028_volume.mrc
Opened cryosparc_P252_J1102_class_06_00028_volume.mrc as #20, grid size
108,108,108, pixel 4.68, shown at level 1.01, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_07_00028_volume.mrc
Opened cryosparc_P252_J1102_class_07_00028_volume.mrc as #21, grid size
108,108,108, pixel 4.68, shown at level 1.03, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_08_00028_volume.mrc
Opened cryosparc_P252_J1102_class_08_00028_volume.mrc as #22, grid size
108,108,108, pixel 4.68, shown at level 1.03, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1102_class_09_00028_volume.mrc
Opened cryosparc_P252_J1102_class_09_00028_volume.mrc as #23, grid size
108,108,108, pixel 4.68, shown at level 1.1, step 1, values float32
> hide #!13 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!20 models
> hide #!21 models
> hide #!22 models
> hide #!23 models
> volume #14 level 0.6849
> show #!15 models
> hide #!14 models
> volume #15 level 0.757
> show #!16 models
> hide #!15 models
> volume #16 level 0.6847
> show #!17 models
> hide #!16 models
> volume #17 level 0.4371
> volume #17 level 0.3466
> show #!18 models
> hide #!17 models
> volume #18 level 0.4557
> show #!19 models
> hide #!18 models
> volume #19 level 0.4718
> show #!20 models
> hide #!19 models
> show #!21 models
> hide #!20 models
> show #!22 models
> hide #!21 models
> volume #22 level 0.614
> show #!23 models
> show #!21 models
> hide #!21 models
> hide #!23 models
> show #!23 models
> hide #!22 models
> volume #23 level 0.005316
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_00_00027_volume.mrc
Opened cryosparc_P252_J1105_class_00_00027_volume.mrc as #24, grid size
72,72,72, pixel 7.02, shown at level 1.32, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_01_00027_volume.mrc
Opened cryosparc_P252_J1105_class_01_00027_volume.mrc as #25, grid size
72,72,72, pixel 7.02, shown at level 1.35, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_02_00027_volume.mrc
Opened cryosparc_P252_J1105_class_02_00027_volume.mrc as #26, grid size
72,72,72, pixel 7.02, shown at level 1.31, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_03_00027_volume.mrc
Opened cryosparc_P252_J1105_class_03_00027_volume.mrc as #27, grid size
72,72,72, pixel 7.02, shown at level 1.27, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_04_00027_volume.mrc
Opened cryosparc_P252_J1105_class_04_00027_volume.mrc as #28, grid size
72,72,72, pixel 7.02, shown at level 1.3, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_05_00027_volume.mrc
Opened cryosparc_P252_J1105_class_05_00027_volume.mrc as #29, grid size
72,72,72, pixel 7.02, shown at level 1.28, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_06_00027_volume.mrc
Opened cryosparc_P252_J1105_class_06_00027_volume.mrc as #30, grid size
72,72,72, pixel 7.02, shown at level 1.37, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_07_00027_volume.mrc
Opened cryosparc_P252_J1105_class_07_00027_volume.mrc as #31, grid size
72,72,72, pixel 7.02, shown at level 1.35, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_08_00027_volume.mrc
Opened cryosparc_P252_J1105_class_08_00027_volume.mrc as #32, grid size
72,72,72, pixel 7.02, shown at level 1.35, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1105_class_09_00027_volume.mrc
Opened cryosparc_P252_J1105_class_09_00027_volume.mrc as #33, grid size
72,72,72, pixel 7.02, shown at level 1.23, step 1, values float32
> hide #!23 models
> hide #!25 models
> hide #!26 models
> hide #!27 models
> hide #!28 models
> hide #!29 models
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> volume #24 level 0.71
> show #!25 models
> hide #!24 models
> show #!26 models
> hide #!25 models
> show #!27 models
> hide #!26 models
> volume #27 level 0.7678
> show #!28 models
> hide #!27 models
> volume #28 level 0.6485
> show #!29 models
> hide #!28 models
> volume #29 level 0.965
> show #!30 models
> hide #!29 models
> show #!31 models
> hide #!30 models
> show #!32 models
> hide #!31 models
> show #!33 models
> hide #!32 models
> volume #33 level 0.3931
> show #!2 models
> select add #2
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-33.242,0,1,0,102.1,0,0,1,196.37
> view matrix models #2,1,0,0,260.07,0,1,0,255.6,0,0,1,243.67
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.66534,-0.74577,0.033868,242.53,-0.7433,0.66599,0.062942,248.08,-0.069496,0.016703,-0.99744,230.27
> view matrix models
> #2,-0.24657,-0.96839,0.037741,244.5,-0.96777,0.2481,0.043229,243.6,-0.051226,-0.025866,-0.99835,230.15
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.24657,-0.96839,0.037741,254.56,-0.96777,0.2481,0.043229,251.47,-0.051226,-0.025866,-0.99835,231.4
> fitmap #2 inMap #33
Fit map emdb 21412 in map cryosparc_P252_J1105_class_09_00027_volume.mrc using
29801 points
correlation = 0.9157, correlation about mean = 0.3509, overlap = 1.968e+04
steps = 64, shift = 8.45, angle = 4.2 degrees
Position of emdb 21412 (#2) relative to
cryosparc_P252_J1105_class_09_00027_volume.mrc (#33) coordinates:
Matrix rotation and translation
-0.29359924 -0.95592767 0.00133163 251.05056699
-0.95592711 0.29360096 0.00135671 251.53070835
-0.00168789 -0.00087461 -0.99999819 239.03770930
Axis -0.59430618 0.80423886 0.00014987
Axis point 218.60124810 0.00000000 119.33049351
Rotation angle (degrees) 179.89244119
Shift along axis 53.12568971
> select subtract #2
Nothing selected
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!24 models
> hide #!33 models
> show #!25 models
> hide #!24 models
> show #!26 models
> hide #!25 models
> show #!27 models
> hide #!26 models
> show #!28 models
> hide #!27 models
> show #!2 models
> fitmap #2 inMap #28
Fit map emdb 21412 in map cryosparc_P252_J1105_class_04_00027_volume.mrc using
29801 points
correlation = 0.8839, correlation about mean = 0.2778, overlap = 1.777e+04
steps = 64, shift = 2.5, angle = 0.734 degrees
Position of emdb 21412 (#2) relative to
cryosparc_P252_J1105_class_04_00027_volume.mrc (#28) coordinates:
Matrix rotation and translation
-0.30261053 -0.95311044 -0.00271331 250.91105686
-0.95308993 0.30262193 -0.00628964 252.87639420
0.00681583 0.00068272 -0.99997654 241.20069471
Axis 0.59049898 -0.80703651 0.00173690
Axis point 217.52754899 0.00000000 121.39128467
Rotation angle (degrees) 179.66173620
Shift along axis -55.49881705
> show #!29 models
> hide #!28 models
> hide #!2 models
> volume #29 level 0.6686
> show #!2 models
> hide #!2 models
> close #3-23
> show #!2 models
> hide #!2 models
> show #!30 models
> hide #!29 models
> show #!2 models
> show #!31 models
> hide #!30 models
> hide #!2 models
> show #!32 models
> hide #!31 models
> show #!33 models
> hide #!32 models
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_00_00122_volume.mrc
Opened cryosparc_P252_J1106_class_00_00122_volume.mrc as #3, grid size
128,128,128, pixel 3.95, shown at level 0.801, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_01_00122_volume.mrc
Opened cryosparc_P252_J1106_class_01_00122_volume.mrc as #4, grid size
128,128,128, pixel 3.95, shown at level 0.791, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_02_00122_volume.mrc
Opened cryosparc_P252_J1106_class_02_00122_volume.mrc as #5, grid size
128,128,128, pixel 3.95, shown at level 1.03, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_03_00122_volume.mrc
Opened cryosparc_P252_J1106_class_03_00122_volume.mrc as #6, grid size
128,128,128, pixel 3.95, shown at level 0.788, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_04_00122_volume.mrc
Opened cryosparc_P252_J1106_class_04_00122_volume.mrc as #7, grid size
128,128,128, pixel 3.95, shown at level 1.06, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_05_00122_volume.mrc
Opened cryosparc_P252_J1106_class_05_00122_volume.mrc as #8, grid size
128,128,128, pixel 3.95, shown at level 1.22, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_06_00122_volume.mrc
Opened cryosparc_P252_J1106_class_06_00122_volume.mrc as #9, grid size
128,128,128, pixel 3.95, shown at level 0.736, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1106_class_07_00122_volume.mrc
Opened cryosparc_P252_J1106_class_07_00122_volume.mrc as #10, grid size
128,128,128, pixel 3.95, shown at level 0.927, step 1, values float32
> close #24-33
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> hide #!5 models
> hide #!4 models
> volume #3 level 0.3225
> show #!4 models
> hide #!3 models
> volume #4 level 0.2037
> show #!5 models
> hide #!4 models
> volume #5 level 0.7081
> show #!6 models
> hide #!5 models
> volume #6 level 0.3644
> show #!7 models
> hide #!6 models
> show #!8 models
> hide #!7 models
> show #!9 models
> hide #!8 models
> show #!10 models
> hide #!9 models
> open /Users/noah/Downloads/cryosparc_P252_J1130_class_02_00181_volume.mrc
Opened cryosparc_P252_J1130_class_02_00181_volume.mrc as #11, grid size
128,128,128, pixel 3.95, shown at level 0.71, step 1, values float32
> hide #!10 models
> volume #11 level 0.9542
> show #!2 models
> fitmap #2 inMap #11
Fit map emdb 21412 in map cryosparc_P252_J1130_class_02_00181_volume.mrc using
29801 points
correlation = 0.9291, correlation about mean = 0.2308, overlap = 9186
steps = 64, shift = 1.11, angle = 1.56 degrees
Position of emdb 21412 (#2) relative to
cryosparc_P252_J1130_class_02_00181_volume.mrc (#11) coordinates:
Matrix rotation and translation
-0.32806305 -0.94465484 -0.00136603 251.18100148
-0.94465284 0.32806531 -0.00204080 251.87059601
0.00237599 0.00062091 -0.99999698 241.56949411
Axis 0.57962710 -0.81488173 0.00043561
Axis point 214.99836207 0.00000000 121.05331739
Rotation angle (degrees) 179.86844585
Shift along axis -59.54819994
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> open /Users/noah/Downloads/cryosparc_P252_J1130_class_01_00181_volume.mrc
Opened cryosparc_P252_J1130_class_01_00181_volume.mrc as #12, grid size
128,128,128, pixel 3.95, shown at level 0.717, step 1, values float32
> hide #!11 models
> hide #!2 models
> open /Users/noah/Downloads/cryosparc_P252_J1143_001_volume_map.mrc
Opened cryosparc_P252_J1143_001_volume_map.mrc as #13, grid size 208,208,208,
pixel 2.43, shown at level 0.404, step 1, values float32
> open /Users/noah/Downloads/cryosparc_P252_J1143_002_volume_map.mrc
Opened cryosparc_P252_J1143_002_volume_map.mrc as #14, grid size 208,208,208,
pixel 2.43, shown at level 0.402, step 1, values float32
> hide #!12 models
> show #!1 models
> hide #!1 models
> close #13
> open /Users/noah/Downloads/cryosparc_P252_J1145_003_volume_map.mrc
Opened cryosparc_P252_J1145_003_volume_map.mrc as #13, grid size 208,208,208,
pixel 2.43, shown at level 0.395, step 1, values float32
> hide #!14 models
> volume #13 level 0.3281
> show #!2 models
> select add #2
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.35114,0.93632,1.0633e-06,268.12,-0.93491,0.35061,0.054853,252.46,0.05136,-0.019262,0.99849,254.8
> view matrix models
> #2,0.34676,0.93759,0.02629,268.26,-0.93795,0.34655,0.012212,252.13,0.0023387,-0.028893,0.99958,254.36
> view matrix models
> #2,0.33433,0.92456,0.18278,269.1,-0.93217,0.35298,-0.080452,251.61,-0.1389,-0.14348,0.97986,252.41
> view matrix models
> #2,0.85967,0.47686,0.18326,270.51,-0.48516,0.87443,0.00055067,258.88,-0.15998,-0.089381,0.98307,252.59
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.85967,0.47686,0.18326,250.19,-0.48516,0.87443,0.00055067,254.79,-0.15998,-0.089381,0.98307,253.94
> view matrix models
> #2,0.85967,0.47686,0.18326,251.65,-0.48516,0.87443,0.00055067,254.21,-0.15998,-0.089381,0.98307,259.54
> fitmap #2 inMap #13
Fit map emdb 21412 in map cryosparc_P252_J1145_003_volume_map.mrc using 29801
points
correlation = 0.9266, correlation about mean = 0.1927, overlap = 5068
steps = 80, shift = 1.46, angle = 15 degrees
Position of emdb 21412 (#2) relative to
cryosparc_P252_J1145_003_volume_map.mrc (#13) coordinates:
Matrix rotation and translation
0.94932689 0.31429038 -0.00011226 253.95878453
-0.31429040 0.94932685 -0.00027786 253.28941946
0.00001924 0.00029906 0.99999995 259.95737410
Axis 0.00091781 -0.00020921 -0.99999956
Axis point 912.42007111 -661.68760739 0.00000000
Rotation angle (degrees) 18.31798884
Shift along axis -259.77716510
> select subtract #2
Nothing selected
> open /Users/noah/Downloads/cryosparc_P253_J722_003_volume_map.mrc
Opened cryosparc_P253_J722_003_volume_map.mrc as #15, grid size 128,128,128,
pixel 1.9, shown at level 0.321, step 1, values float32
> hide #!2 models
> hide #!13 models
> volume #15 level 0.1698
> volume #15 level 0.1887
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/noah/Downloads/cryosparc_P252_J1150_000_volume_map.mrc
Opened cryosparc_P252_J1150_000_volume_map.mrc as #1, grid size 192,192,192,
pixel 2.43, shown at level 0.397, step 1, values float32
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,6
Model Number: Z1AU002JQD/A
Chip: Apple M3 Pro
Total Number of Cores: 11 (5 performance and 6 efficiency)
Memory: 18 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 6 days, 20 hours, 47 minutes
Graphics/Displays:
Apple M3 Pro:
Chipset Model: Apple M3 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
Change History (2)
comment:1 by , 8 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 8 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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