ArtiaX: ColorRangeWidget: 'list' object is not callable

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-14.6.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  

> toolshed show

Opened 21Mar23_lmla005_ts_002.mrc_9.78Apx.mrc as #1.1.1, grid size
682,960,316, pixel 9.78,9.78,9.78, shown at level 0.0521, step 4, values
float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 contrastCenter -0.00977512

> artiax tomo #1.1.1 contrastWidth 0.25235203

> artiax tomo #1.1.1 slice 157

> artiax tomo #1.1.1 slice 146

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 sliceDirection 0,1,0

> artiax view xz

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 sliceDirection 1,0,0

> artiax view yz

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> mousemode rightMode "move planes"

> open /Users/matteoall/Desktop/run_ct11_data_20S.star format star

Summary of feedback from opening
/Users/matteoall/Desktop/run_ct11_data_20S.star  
---  
notes | Processed as relion  
Processed as relion  
  

> artiax clip off

Opened Particle list run_ct11_data_20S.star with 91608 particles.  

> open /Users/matteoall/Desktop/run_data_20S_PA200x2.star format star

Summary of feedback from opening
/Users/matteoall/Desktop/run_data_20S_PA200x2.star  
---  
notes | Processed as relion  
Processed as relion  
  

> artiax clip off

Opened Particle list run_data_20S_PA200x2.star with 490 particles.  
Opened 21Mar23_lmla005_ts_002.mrc_9.78Apx.mrc as #1.1.1, grid size
682,960,316, pixel 9.78,9.78,9.78, shown at level 0.0521, step 4, values
float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> open /Users/matteoall/Desktop/run_data_20S_PA200x2.star format star

Summary of feedback from opening
/Users/matteoall/Desktop/run_data_20S_PA200x2.star  
---  
notes | Processed as relion  
Processed as relion  
  

> artiax clip off

Opened Particle list run_data_20S_PA200x2.star with 490 particles.  
Opened 26June2023_lmla005_ts_002.mrc_9.78Apx.mrc as #1.1.1, grid size
682,960,316, pixel 9.78,9.78,9.78, shown at level 0.0444, step 4, values
float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> open /Users/matteoall/Desktop/run_data_20S_PA200.star format star

Summary of feedback from opening
/Users/matteoall/Desktop/run_data_20S_PA200.star  
---  
notes | Processed as relion  
Processed as relion  
  

> artiax clip off

Opened Particle list run_data_20S_PA200.star with 4861 particles.  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 sliceDirection 0,1,0

> artiax view xz

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> mousemode rightMode "move planes"

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax start

Opened 26June2023_lmla005_ts_002.mrc_9.78Apx.mrc as #1.1.1, grid size
682,960,316, pixel 9.78,9.78,9.78, shown at level 0.0444, step 4, values
float32  

> artiax clip off

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.1 contrastCenter 0.02400238

> artiax tomo #1.1.1 contrastWidth 0.21847497

> artiax tomo #1.1.1 slice 143

Array Excerpt (first 5 elements):  
[-0.0107346 0.00232946 0.01287432 0.01360063 0.01701941]  
  
Basic Information:  
Shape: (316, 960, 682)  
Data type: float32  
Size (number of elements): 206891520  
Memory (bytes): 827566080  
Max value: 0.18679547309875488  
Min value: -0.30272337794303894  
Max value: 0.18679547309875488  
Min value: -0.30272337794303894  
Midpoint: -0.05796395242214203  
Inverted array (first 5 elements):  
[-0.10519331 -0.11825737 -0.12880222 -0.12952854 -0.13294733]  
Opened 26June2023_lmla005_ts_002.mrc_9.78Apx_invert as #1.1.2, grid size
682,960,316, pixel 3.26, shown at level -0.068, step 1, values float32  

> artiax clip off

Array Excerpt (first 5 elements):  
[-0.10519331 -0.11825737 -0.12880222 -0.12952854 -0.13294733]  
  
Basic Information:  
Shape: (316, 960, 682)  
Data type: float32  
Size (number of elements): 206891520  
Memory (bytes): 827566080  
Max value: 0.18679547309875488  
Min value: -0.30272337794303894  
Max value: 0.18679547309875488  
Min value: -0.30272337794303894  
Midpoint: -0.05796395242214203  
Inverted array (first 5 elements):  
[-0.0107346 0.00232946 0.01287432 0.01360063 0.01701942]  
Opened 26June2023_lmla005_ts_002.mrc_9_invert as #1.1.3, grid size
682,960,316, pixel 3.26, shown at level 0.0445, step 1, values float32  

> artiax clip off

> open "/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted
> occurrences of “26June2023_lmla005_ts_002”PA2002x20S.star" format star

Summary of feedback from opening
/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted occurrences of
“26June2023_lmla005_ts_002”PA2002x20S.star  
---  
notes | Processed as relion  
  

> artiax clip off

Opened Particle list Extracted occurrences of
“26June2023_lmla005_ts_002”PA2002x20S.star with 5 particles.  

> artiax particles #1.2.1 color 94,64,100,71

> artiax particles #1.2.1 color 94,64,100,100

> artiax tomo #1.1.3 slice 111

> artiax tomo #1.1.3 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.3 slice 111

> artiax tomo #1.1.3 slice 102

> artiax particles #1.2.1 color 100,80,60,100

> artiax particles #1.2.1 color 56,49,0,100

> artiax particles #1.2.1 color 0,20,50,100

> artiax particles #1.2.1 color 30,0,36,100

> artiax particles #1.2.1 color 30,0,36,71

> artiax particles #1.2.1 color 30,0,36,100

> artiax particles #1.2.1 radius 17.73823529

> artiax particles #1.2.1 color 30,0,36,93

minimum: 1653.979, maximum: 1653.979  
5 atoms, 5 residues, atom rlnCoordinateX range 1.65e+03 to 1.65e+03  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnCoordinateX palette redgreen minValue 1653.979
> maxValue 1653.979 transparency 6.61764706

> artiax particles #1.2.1 color 30,0,36,93

> open "/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted
> occurrences of “26June2023_lmla005_ts_002”PA20020S.star" format star

Summary of feedback from opening
/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted occurrences of
“26June2023_lmla005_ts_002”PA20020S.star  
---  
notes | Processed as relion  
  

> artiax clip off

Opened Particle list Extracted occurrences of
“26June2023_lmla005_ts_002”PA20020S.star with 85 particles.  

> artiax tomo #1.1.3 pixelSize 3.26

> artiax view xy

> artiax tomo #1.1.3 slice 121

> artiax tomo #1.1.3 slice 113

> artiax tomo #1.1.3 slice 131

> artiax tomo #1.1.3 slice 135

> open "/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted
> occurrences of “26June2023_lmla005_ts_002”.txt_20S.star" format star

Summary of feedback from opening
/Users/matteoall/Desktop/Star_files_Proteasomes_best/Extracted occurrences of
“26June2023_lmla005_ts_002”.txt_20S.star  
---  
notes | Processed as relion  
  

> artiax clip off

Opened Particle list Extracted occurrences of
“26June2023_lmla005_ts_002”.txt_20S.star with 3000 particles.  

> artiax tomo #1.1.3 slice 154

> open /Users/matteoall/Desktop/run_ct11_class001_20S.mrc

Opened run_ct11_class001_20S.mrc as #2, grid size 128,128,128, pixel 3.26,
shown at level 0.495, step 1, values float32  

> artiax attach #2 toParticleList #1.2.1

Opened run_ct11_class001_20S.mrc as #1.2.1.1.1, grid size 128,128,128, pixel
3.26, shown at level 0.495, step 1, values float32  

> volume #1.2.1.1.1 capFaces false

> artiax show #1.2.1 surfaces

> artiax particles #1.2.1 surfaceLevel 0.77942408

> artiax particles #1.2.1 color 94,64,100,23

> artiax particles #1.2.1 color 94,64,100,17

> artiax particles #1.2.1 color 94,64,100,13

> artiax tomo #1.1.3 sliceDirection 0,1,0

> artiax view xz

> mousemode rightMode "move planes"

> artiax tomo #1.1.3 sliceDirection 1,0,0

> artiax view yz

> mousemode rightMode "move planes"

> artiax tomo #1.1.3 sliceDirection 0,0,1

> artiax view xy

> mousemode rightMode "move planes"

> artiax particles #1.2.1 originScaleFactor 3.0

> artiax view xy

> artiax tomo #1.1.3 pixelSize 9.779

> artiax view xy

> artiax tomo #1.1.3 pixelSize 9.779

> artiax view xy

> artiax tomo #1.1.3 pixelSize 9.78

> artiax view xy

> artiax tomo #1.1.3 pixelSize 9.78

> artiax view xy

> artiax tomo #1.1.3 pixelSize 9.78

> artiax view xy

> artiax tomo #1.1.3 slice 180

minimum: 262.50346800000005, maximum: 1984.4749180000001  
3000 atoms, 3000 residues, atom rlnCoordinateX range 263 to 1.98e+03  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnCoordinateX palette redgreen minValue
> 262.50346800000005 maxValue 1984.4749180000001 transparency 87.05882353

minimum: 1.0, maximum: 1.0  
3000 atoms, 3000 residues, atom rlnNormCorrection range 1 to 1  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnNormCorrection palette redgreen minValue 1.0
> maxValue 1.0 transparency 87.05882353

minimum: 7534649.0, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7534649.0 maxValue 7557327.0 transparency 87.05882353

minimum: 0.046371, maximum: 0.999142  
3000 atoms, 3000 residues, atom rlnMaxValueProbDistribution range 0.0464 to
0.999  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnMaxValueProbDistribution palette redgreen
> minValue 0.046371 maxValue 0.999142 transparency 87.05882353

minimum: 1.0, maximum: 48.0  
3000 atoms, 3000 residues, atom rlnNrOfSignificantSamples range 1 to 48  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnNrOfSignificantSamples palette redgreen minValue
> 1.0 maxValue 48.0 transparency 87.05882353

minimum: 7534649.0, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7534649.0 maxValue 7557327.0 transparency 87.05882353

minimum: 7534649.0, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7534787.280487805, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7535202.12195122, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7535340.402439024, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7535616.963414635, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7535755.243902439, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7536031.804878049, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7536446.646341464, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7536584.926829268, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7536723.207317073, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7537138.048780488, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7537276.3292682925, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7537276.3292682925, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7537276.3292682925 maxValue 7557327.0 transparency 87.05882353

minimum: 7537552.890243903, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7537414.609756097, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538106.0121951215, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538797.414634147, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538935.695121951, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539073.975609756, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539212.256097561, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539212.256097561, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7539212.256097561 maxValue 7557327.0 transparency 87.05882353

minimum: 7539350.536585365, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539488.817073171, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7540456.780487805, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7541424.743902439, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7541977.865853659, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7541977.865853659, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7541977.865853659 maxValue 7557327.0 transparency 87.05882353

minimum: 7542116.146341464, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7541977.865853659, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7541424.743902439, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7540871.62195122, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539903.658536585, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539488.817073171, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7539073.975609756, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538520.853658536, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538382.573170732, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
minimum: 7538382.573170732, maximum: 7557327.0  
3000 atoms, 3000 residues, atom rlnLogLikeliContribution range 7.53e+06 to
7.56e+06  
[Repeated 1 time(s)]

> artiax colormap #1.2.1.3 rlnLogLikeliContribution palette redgreen minValue
> 7538382.573170732 maxValue 7557327.0 transparency 87.05882353

> ui mousemode right select

> select #1.2.1.2

1 model selected  

> select #1.2.1.2

1 model selected  

> ui mousemode right "delete picked particle"

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1681, in _partlist_changed  
self._update_partlist_ui()  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1681, in _partlist_changed  
self._update_partlist_ui()  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> ui mousemode right "delete picked particle"

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1681, in _partlist_changed  
self._update_partlist_ui()  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1681, in _partlist_changed  
self._update_partlist_ui()  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/options_window.py", line 1647, in _update_partlist_ui  
self.color_selection.set_partlist(pl)  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
TypeError: 'list' object is not callable  
  
Error processing trigger "partlist changed":  
TypeError: 'list' object is not callable  
  
File "/Users/matteoall/Library/Application
Support/ChimeraX/1.9/lib/python/site-
packages/chimerax/artiax/widgets/ColorRangeWidget.py", line 301, in
set_partlist  
curr_min = max(self.partlist.color_settings['minimum'], self.minimum)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,1
      Model Number: MK1F3B/A
      Chip: Apple M1 Pro
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 10151.140.19
      OS Loader Version: 10151.140.19

Software:

    System Software Overview:

      System Version: macOS 14.6.1 (23G93)
      Kernel Version: Darwin 23.6.0
      Time since boot: 64 days, 22 hours, 5 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U3219Q:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.6.0
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    geomdl: 5.3.1
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    pandas: 2.2.3
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
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    ptyprocess: 0.7.0
    pure_eval: 0.2.3
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    pyarrow: 19.0.1
    pycollada: 0.8
    pydantic: 2.10.6
    pydantic_core: 2.27.2
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
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    tables: 3.10.1
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    typing_extensions: 4.12.2
    tzdata: 2024.2
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