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Mar 21, 2025:

5:05 PM ChangeLog edited by Elaine Meng: (diff)
3:24 PM Ticket #17165 (Session restore: KeyError: "combine") created by chimerax-bug-report@…: […]
2:07 PM Ticket #17164 (Crash after opening session) created by chimerax-bug-report@…: […]
1:56 PM ChangeLog edited by Elaine Meng: (diff)
1:45 PM Ticket #17163 (Crash in event loop) created by chimerax-bug-report@…: […]
12:19 PM Ticket #17162 (ISOLDE: crash in 'clipper spotlight') created by chimerax-bug-report@…: […]
10:46 AM Ticket #17161 (Crash moving window between screens) created by chimerax-bug-report@…: […]
9:32 AM Ticket #17160 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
9:31 AM Ticket #17159 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
9:24 AM Ticket #17153 (Web services down) closed by Zach Pearson: fixed: They should be back up now, sorry for the inconvenience!
8:49 AM Ticket #17158 (Web services down) closed by pett: duplicate: Adding reporter to the main ticket we have open for this.
8:39 AM Ticket #17155 (Crash in event loop) closed by pett: can't reproduce
8:37 AM Ticket #17154 (Crash in garbage collection) closed by pett: duplicate: Hi Kirti, Thanks for reporting this problem. It has been fixed in …
7:21 AM Ticket #17158 (Web services down) created by julio.bonilla@…: […]
6:20 AM Ticket #17157 (Crash after opening 7nep) created by chimerax-bug-report@…: […]
3:00 AM Ticket #17156 (AddH: all hydrogen names taken) created by chimerax-bug-report@…: […]
2:08 AM Ticket #17155 (Crash in event loop) created by chimerax-bug-report@…: […]
12:12 AM Ticket #17154 (Crash in garbage collection) created by blz208813@…: […]

Mar 20, 2025:

10:08 PM Ticket #17152 (Crash moving window between screens) closed by pett: duplicate
9:42 PM Ticket #17153 (Web services down) created by grzesiak1@…: […]
4:11 PM Ticket #17152 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:17 PM Ticket #17148 (Crash in chem_group on Windows) closed by pett: can't reproduce
1:33 PM Ticket #17151 (Crash on exit destroying OpenGL contexts) closed by pett: can't reproduce
1:31 PM Ticket #17150 (Crash in event loop) closed by pett: can't reproduce
1:30 PM Ticket #17149 (Crash in chem_group on Windows) closed by pett: duplicate
12:16 PM 2025-3-20 edited by Elaine Meng: (diff)
12:16 PM 2025-3-20 edited by Elaine Meng: (diff)
12:15 PM 2025-3-20 edited by Elaine Meng: (diff)
12:10 PM 2025-3-20 created by Elaine Meng
12:08 PM DeveloperMeetings edited by Elaine Meng: (diff)
10:56 AM Ticket #17146 (FoldSeek: Permission denied writing temp file) closed by pett: duplicate: Duplicate of #17050
10:48 AM Ticket #17145 (Crash reading xtc file) closed by pett: can't reproduce: It looks like the crash log has been edited down.
10:39 AM Ticket #17144 (Crash on Mac waking from sleep) closed by pett: duplicate: As per your previous report of this (ticket #17132): ChimeraX 1.9 may …
10:34 AM Ticket #17143 (Crash deleting atoms) closed by pett: can't reproduce
10:28 AM Ticket #17142 (Crash on Mac waking from sleep) closed by pett: duplicate
10:27 AM Ticket #17141 (ChimeraX not communicating with GPU) closed by pett: duplicate: Asked and answered on the chimerax-users list
10:26 AM Ticket #17140 (Nothing but OpenGL errors) closed by pett: can't reproduce
10:00 AM Ticket #17151 (Crash on exit destroying OpenGL contexts) created by chimerax-bug-report@…: […]
9:30 AM Ticket #17150 (Crash in event loop) created by chimerax-bug-report@…: […]
9:05 AM Ticket #17149 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:02 AM Ticket #17148 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
7:50 AM Ticket #17147 (Crash at startup / in event loop) created by kyogendra@…: […]
7:13 AM Ticket #17146 (FoldSeek: Permission denied writing temp file) created by chimerax-bug-report@…: […]
6:29 AM Ticket #17145 (Crash reading xtc file) created by chimerax-bug-report@…: […]
5:52 AM Ticket #17144 (Crash on Mac waking from sleep) created by halle.andrews-clark@…: […]
2:24 AM Ticket #17143 (Crash deleting atoms) created by chimerax-bug-report@…: […]
2:01 AM Ticket #17142 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 19, 2025:

11:47 PM Ticket #17141 (ChimeraX not communicating with GPU) created by TANY0517@…: […]
9:56 PM Ticket #16951 (Unresponsive on Windows) closed by Greg Couch: can't reproduce: No followup from user.
9:45 PM Ticket #17140 (Nothing but OpenGL errors) created by chimerax-bug-report@…: […]
7:46 PM Ticket #17139 (Crash in mmcif::ExtractMolecule::finished_parse) closed by Greg Couch: can't reproduce: Need a test case. But separated finish_parse routine into 4 subparts …
7:24 PM Ticket #17113 (Alphafold predictions broken by Google Colab update to numpy 2) closed by Tom Goddard: fixed: Fixed. Colabfold developer Milot Mirdita updated Colabfold to work …
11:39 AM Ticket #17139 (Crash in mmcif::ExtractMolecule::finished_parse) created by chimerax-bug-report@…: […]
11:37 AM Ticket #17138 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett: duplicate
11:37 AM Ticket #17137 ('ArrayGridData' object has no attribute 'dicom_data') closed by pett: duplicate
11:34 AM Ticket #17136 (Crash in redraw) closed by pett: can't reproduce: Possibly as volume contour level was changed.
11:22 AM Ticket #17134 (Crash on Mac waking from sleep) closed by pett: duplicate
11:20 AM Ticket #17133 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:46 AM Ticket #17138 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:46 AM Ticket #17137 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:30 AM Ticket #17132 (Crash on Mac waking from sleep) closed by pett: duplicate: ChimeraX 1.9 may encounter this crash less often. It is a bug in the …
10:20 AM Ticket #17131 (Crash on Mac waking from sleep) closed by pett: duplicate
10:19 AM Ticket #17130 (MemoryError saving map in session) closed by pett: duplicate
10:13 AM Ticket #17128 (Crash on Mac waking from sleep) closed by pett: duplicate
10:11 AM Ticket #17127 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:01 AM Ticket #17126 (Crash in numpy?) closed by pett: can't reproduce: Though the line number in structure.py doesn't seem to make sense, …
9:54 AM Ticket #17125 (MemoryError saving map in session) closed by pett: duplicate
9:52 AM Ticket #17124 (Crash in event loop) closed by pett: can't reproduce: After using some SEQCROW capabilities, which may or may not be relevant.
9:04 AM Ticket #17136 (Crash in redraw) created by chimerax-bug-report@…: […]
8:52 AM Ticket #17135 (ArtiaX: ColorRangeWidget: 'list' object is not callable) created by chimerax-bug-report@…: […]
8:20 AM Ticket #17134 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:29 AM Ticket #17133 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
5:29 AM Ticket #17132 (Crash on Mac waking from sleep) created by halle.andrews-clark@…: […]
5:16 AM Ticket #17131 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:13 AM Ticket #17130 (MemoryError saving map in session) created by chimerax-bug-report@…: […]
4:35 AM Ticket #17129 (UncodeDecodeError using charmap codec to read mmCIF) created by chimerax-bug-report@…: […]
1:28 AM Ticket #17128 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 18, 2025:

11:24 PM Ticket #17127 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:25 PM Ticket #17126 (Crash in numpy?) created by chimerax-bug-report@…: […]
9:17 PM Ticket #17125 (MemoryError saving map in session) created by chimerax-bug-report@…: […]
2:47 PM Ticket #17124 (Crash in event loop) created by chimerax-bug-report@…: […]
11:24 AM Ticket #17123 (Crash in event loop) closed by pett: can't reproduce: The user had used a few SEQCROW tools, which may or may not be relevant.
11:21 AM Ticket #17122 (Crash in QWebEngine backend) closed by pett: can't reproduce
10:59 AM Ticket #17123 (Crash in event loop) created by chimerax-bug-report@…: […]
10:48 AM Ticket #17120 (Session restore: ItemTable's selectionModel() is None (Parsing ...) closed by pett: duplicate: Duplicate of #16654
10:35 AM Ticket #17122 (Crash in QWebEngine backend) created by chimerax-bug-report@…: […]
10:35 AM Ticket #17119 (Crash in graphics driver after 100 sequence alignment panels make ...) closed by pett: can't reproduce
10:34 AM Ticket #17118 (Graphics crash after 100 sequence alignment panels shown) closed by pett: can't reproduce
10:28 AM Ticket #17117 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
10:18 AM Ticket #17116 (MemoryError saving map in session) closed by pett: duplicate
10:13 AM Ticket #17121 (Hang in save dialog) created by juliet@…: […] ChimeraX Error Report 03.18.25.rtf
9:29 AM Ticket #17120 (Session restore: ItemTable's selectionModel() is None (Parsing ...) created by chimerax-bug-report@…: […]
8:44 AM Ticket #17119 (Crash in graphics driver after 100 sequence alignment panels make ...) created by chimerax-bug-report@…: […]
8:27 AM Ticket #17118 (Graphics crash after 100 sequence alignment panels shown) created by chimerax-bug-report@…: […]
6:54 AM Ticket #17117 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
6:05 AM Ticket #17116 (MemoryError saving map in session) created by chimerax-bug-report@…: […]
6:03 AM Ticket #17115 (MemoryError saving map in session) created by chimerax-bug-report@…: […]
4:35 AM Ticket #17114 (ChimeraX forgets matchmaker command after installing other bundles) created by chimerax-bug-report@…: […]

Mar 17, 2025:

6:35 PM Ticket #17098 (XPLOR file: Bad number format) closed by Tom Goddard: nonchimerax: Bad input file. Has no spaces between some of the numbers.
3:42 PM Ticket #17034 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson: fixed: Should be fixed in daily builds
3:42 PM Ticket #17113 (Alphafold predictions broken by Google Colab update to numpy 2) created by goddard@…: […]
3:33 PM Ticket #17046 (RFE: Add a matchmaker option logParameters) closed by pett: fixed: There is a "logParameters" command keyword now, and an option under …
12:48 PM Ticket #17108 (VR error: CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard: can't reproduce: I think this error message really means SteamVR had a problem, for …
11:50 AM Ticket #17111 (Crash in QWebEngine backend) closed by pett: can't reproduce
11:49 AM Ticket #17110 (Crash on Mac waking from sleep) closed by pett: duplicate
11:48 AM Ticket #17109 (Crash moving window between screens) closed by pett: duplicate
11:48 AM Ticket #17107 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson: duplicate: This has been fixed in daily builds.
11:39 AM Ticket #17104 (Crash in open-file dialog) closed by pett: can't reproduce
11:17 AM Ticket #17103 (Crash in garbage collection) closed by pett: duplicate
11:17 AM Ticket #17102 (Scipy symbol not found) closed by pett: duplicate: Duplicate of #17079
11:14 AM Ticket #17101 (Crash on Mac waking from sleep) closed by pett: can't reproduce
11:04 AM Ticket #17100 (Crash handling text input) closed by pett: can't reproduce
10:53 AM Ticket #17099 (Crash moving window between screens) closed by pett: duplicate
10:50 AM Ticket #17097 (Crash on Mac waking from sleep) closed by pett: duplicate
10:49 AM Ticket #17096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
10:47 AM Ticket #17095 (Crash on Mac waking from sleep) closed by pett: duplicate
10:28 AM Ticket #17112 (Add alphafold error plot menu entry to select residues when dragging box) created by matthias.vorlaender@…: Matthias asked how to select residues when dragging a box on a PAE …
8:12 AM Ticket #17111 (Crash in QWebEngine backend) created by chimerax-bug-report@…: […]
7:28 AM Ticket #17110 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:10 AM Ticket #17109 (Crash moving window between screens) created by chimerax-bug-report@…: […]
3:17 AM Ticket #17108 (VR error: CompositorError_TextureUsesUnsupportedFormat) created by chimerax-bug-report@…: […]
2:58 AM Ticket #17107 ('ArrayGridData' object has no attribute 'dicom_data') created by biou@…: […] Capture d’écran 2025-03-17 à 10.57.44.png
2:30 AM Ticket #17106 (ISOLDE: Failed to add atoms; more than its assigned geometry can support) created by 22111510066@…: […]

Mar 16, 2025:

1:24 PM Ticket #17105 (Session restore: MemoryError: Unable to enlarge internal buffer) created by chimerax-bug-report@…: […]
10:41 AM Ticket #17104 (Crash in open-file dialog) created by chimerax-bug-report@…: […]

Mar 15, 2025:

5:13 AM Ticket #17103 (Crash in garbage collection) created by chimerax-bug-report@…: […]

Mar 14, 2025:

2:56 PM Ticket #17102 (Scipy symbol not found) created by chimerax-bug-report@…: […]
2:32 PM ChangeLog edited by Elaine Meng: (diff)
2:31 PM ChangeLog edited by Elaine Meng: (diff)
1:48 PM Ticket #17101 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:15 PM Ticket #17100 (Crash handling text input) created by chimerax-bug-report@…: […]
11:27 AM Ticket #17099 (Crash moving window between screens) created by chimerax-bug-report@…: […]
7:35 AM Ticket #17098 (XPLOR file: Bad number format) created by chimerax-bug-report@…: […]
7:35 AM Ticket #17097 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:34 AM Ticket #17096 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
12:54 AM Ticket #17095 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 13, 2025:

6:15 PM Ticket #17094 (Volume rendering with linear interpolation show cross artifacts) created by ricardorighetto@…: Ricardo Righetto sent a ChimeraX image noting vertical and horizontal …
6:05 PM Ticket #17093 (Add volume display auto-contrast capability) created by ricardorighetto@…: Ricardo Righetto says he sees more detail in tomogram slices in 3dmod …
5:58 PM Ticket #17092 (UnicodeDecodeError reading PDB file) closed by pett: can't reproduce: Looks like it might have been a renamed PDF file.
5:33 PM Ticket #17088 (MemoryError saving maps in sessions) closed by Tom Goddard: limitation: This ChimeraX error says your computer ran out of memory while saving …
5:26 PM Ticket #17084 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
5:26 PM Ticket #17083 (Crash moving window between screens) closed by Tom Goddard: duplicate
5:25 PM Ticket #17090 (ISOLDE/OpenMM in 1.10) closed by pett: fixed: Updated Toolshed to not show releases of ISOLDE that are not in fact …
5:13 PM Ticket #17092 (UnicodeDecodeError reading PDB file) created by chimerax-bug-report@…: […]
2:55 PM Ticket #17089 (Crash on Mac waking from sleep) closed by pett: duplicate
2:49 PM Ticket #17086 (Crash on exit) closed by pett: can't reproduce
2:48 PM Ticket #16387 (Find Cavities crash) closed by pett: fixed: This problem is fixed in the latest daily builds.
2:47 PM Ticket #17085 (Find Cavities crash) closed by pett: duplicate: Duplicate of #16461
2:43 PM Ticket #17082 (Crash on Mac waking from sleep) closed by pett: duplicate
1:48 PM Ticket #17091 (Crash moving window between screens) created by chimerax-bug-report@…: […]
11:47 AM Ticket #17090 (ISOLDE/OpenMM in 1.10) created by zrizvi@…: […]
9:14 AM Ticket #17089 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:06 AM Ticket #17088 (MemoryError saving maps in sessions) created by anmugo@…: […]
4:39 AM Ticket #17087 (Postinst or prerm script issue related to GLIBC version) created by Roden Deng Luo: […]
12:53 AM Ticket #17086 (Crash on exit) created by chimerax-bug-report@…: […]
12:39 AM Ticket #17085 (Find Cavities crash) created by chimerax-bug-report@…: […]
12:10 AM Ticket #17084 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 12, 2025:

11:51 PM Ticket #17083 (Crash moving window between screens) created by chimerax-bug-report@…: […]
8:18 PM Ticket #17082 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:15 PM Ticket #17081 (Session restore: KeyError: "combine") created by anmugo@…: […]
6:58 PM 2025-3-13 edited by Tom Goddard: (diff)
4:36 PM Dev2025-3-17 edited by Tom Goddard: (diff)
4:16 PM Ticket #17079 (Scipy symbol not found) closed by Zach Pearson: fixed: Should be fixed tomorrow.
3:55 PM Ticket #17080 (ChimeraX should not ask to reregister) created by goddard@…: […] registration
1:11 PM Ticket #17066 (Reset seq_rmsd with new matchmaker) closed by pett: can't reproduce: For me, the Render/Select by Attribute histogram updates appropriately …
12:19 PM Ticket #17079 (Scipy symbol not found) created by chimerax-bug-report@…: […]
11:18 AM Ticket #17077 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:17 AM Ticket #17076 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:16 AM Ticket #17075 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:15 AM Ticket #17074 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:26 AM Ticket #17078 (Provide csv output for foldseek results table) created by malovic@…: Add a context menu entry to save foldseek results table in …
10:05 AM Ticket #17077 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
10:05 AM Ticket #17072 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5300M) closed by Tom Goddard: nonchimerax: Crash in Apple AMD graphics driver
10:03 AM Ticket #17070 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
9:50 AM Ticket #17071 (Crash on exit) closed by pett: can't reproduce
9:48 AM Ticket #17069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
9:41 AM Ticket #17076 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:26 AM Ticket #17075 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:25 AM Ticket #17074 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:21 AM Ticket #17073 (QXcbIntegration: Cannot create platform OpenGL context, neither GLX ...) created by mohamad.harastani@…: […]
5:36 AM Ticket #17072 (Graphics crash, macOS 14.7.1, AMD Radeon Pro 5300M) created by chimerax-bug-report@…: […]
1:57 AM Ticket #17071 (Crash on exit) created by chimerax-bug-report@…: […]
1:18 AM Ticket #17070 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 11, 2025:

2:43 PM Ticket #17069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
12:53 PM Ticket #17065 (Save imagejtiff: the ImageJ format does not support data type 'b') closed by Tom Goddard: nonchimerax: The mask you created has bytes (8-bit signed integer) and the error …
12:41 PM Ticket #17068 (Foldseek: AttributeError: 'Sequence' object has no attribute 'match_maps') created by goddard@…: […]
12:10 PM Ticket #17061 (Crash creating HTML profile) closed by Tom Goddard: can't reproduce: This ChimeraX crash is due to a bug in the Qt window toolkit. It is …
12:07 PM Ticket #17059 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:47 AM Dev2025-3-17 edited by Tom Goddard: (diff)
11:08 AM Dev2025-3-17 created by Tom Goddard
11:07 AM 2025-3-13 created by Tom Goddard
11:06 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:12 AM Ticket #17067 (Crash in QWebEngine backend) closed by pett: can't reproduce
10:05 AM Ticket #17067 (Crash in QWebEngine backend) created by chimerax-bug-report@…: […]
10:01 AM Ticket #17063 (Crash in Modeller tool _update_sequence_menus in Qt call ...) closed by pett: duplicate: Duplicate of #15753
9:59 AM Ticket #17062 (Unknown problem) closed by pett: worksforme
9:51 AM Ticket #17060 (XTC num_atoms mismatch) closed by pett: can't reproduce: XTC reader reported the right number of atoms but the coordinate array …
9:49 AM Ticket #17066 (Reset seq_rmsd with new matchmaker) created by matt.jaremko@…: […] [[Image(...)]]
9:07 AM Ticket #17065 (Save imagejtiff: the ImageJ format does not support data type 'b') created by brandon.scott@…: […]
8:50 AM Ticket #17064 (SEQCROW: problem setting up a coordinate scan with xTB) created by andrea.pellegrini15@…: […]
2:41 AM Ticket #17063 (Crash in Modeller tool _update_sequence_menus in Qt call ...) created by chimerax-bug-report@…: […]
1:52 AM Ticket #17062 (Unknown problem) created by chimerax-bug-report@…: […]
1:33 AM Ticket #17061 (Crash creating HTML profile) created by andreu.mormaldonado@…: […]

Mar 10, 2025:

8:24 PM Ticket #17060 (XTC num_atoms mismatch) created by chimerax-bug-report@…: […]
4:24 PM Dev2025-3-10 edited by Tom Goddard: (diff)
3:33 PM Ticket #17059 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:01 PM Dev2025-3-10 edited by Tom Goddard: (diff)
2:18 PM Dev2025-3-10 edited by Zach Pearson: (diff)
2:18 PM Dev2025-3-10 edited by Zach Pearson: (diff)
12:48 PM Ticket #17058 (Updates tool: tuple index out of range) created by chimerax-bug-report@…: […]
12:14 PM Ticket #17044 (Restore surface: 'points' is None) closed by Tom Goddard: fixed: Fixed. User applied radial coloring to an empty surface (e.g. a …
11:43 AM Ticket #17030 (File with spaces in path won't open from command-line on Windows) closed by pett: limitation: Yeah, the log is HTML, so multiple consecutive spaces become a single …
11:41 AM Ticket #17057 (Number_Entry widget: could not convert string to float: '') closed by Tom Goddard: fixed: Fixed. User enabled fit with simulated map in the Fit in Map panel …
11:25 AM Ticket #17053 (Graphics crash, macOS 12.2.1, Intel HD Graphics 6000) closed by Tom Goddard: nonchimerax: Apple Intel graphics driver crash.
11:23 AM Ticket #17050 (FoldSeek: Permission denied writing temp file) closed by Tom Goddard: duplicate: This error using the ChimeraX Foldseek tool was fixed a few months ago …
11:21 AM Ticket #17048 (AlphaFold Error Plot: IndexError: list index out of range) closed by Tom Goddard: duplicate: Fixed in ChimeraX 1.9. Trying to show an AlphaFold 3 PAE file with a …
11:20 AM Ticket #17047 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:19 AM Ticket #17045 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The message shown in the Bug reporting panel when you reported this …
10:55 AM Ticket #17055 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
10:52 AM Ticket #16461 (Find Cavities crash) closed by pett: fixed: Fixed by increasing the ChimeraX stack limit on Windows. Fix is in …
10:52 AM Ticket #17057 (Number_Entry widget: could not convert string to float: '') created by chimerax-bug-report@…: […]
10:46 AM Ticket #17054 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:40 AM Ticket #17052 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
10:36 AM Ticket #17049 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
9:59 AM Ticket #17056 (Crash on exit destroying Qt OpenGL contexts) created by vandanajakhar77@…: […]
9:29 AM Ticket #17055 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
5:27 AM Ticket #17054 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
3:50 AM Ticket #17053 (Graphics crash, macOS 12.2.1, Intel HD Graphics 6000) created by chimerax-bug-report@…: […]

Mar 8, 2025:

11:43 PM Ticket #17052 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
8:25 PM Ticket #17051 (ISOLDE add aa problem) created by rohou.alexis@…: […]
5:10 PM Ticket #17050 (FoldSeek: Permission denied writing temp file) created by james.lingford@…: […]
1:50 PM Ticket #17049 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
11:19 AM Ticket #17048 (AlphaFold Error Plot: IndexError: list index out of range) created by chimerax-bug-report@…: […]

Mar 8, 2025:

7:55 AM Ticket #17047 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Mar 7, 2025:

7:09 PM Ticket #17046 (RFE: Add a matchmaker option logParameters) created by goddard@…: […]
4:01 PM Ticket #15957 (Segmentations: self.view.drawing.parent is None) closed by Zach Pearson: fixed: This is fixed in newer daily builds.
3:23 PM Ticket #17045 (Crash on Mac waking from sleep) created by sphulera@…: […]
3:18 PM Ticket #17044 (Restore surface: 'points' is None) created by chimerax-bug-report@…: […]
2:53 PM Ticket #17043 (Crash in atom-spec parsing with matchmaker, not a long atomspec.) closed by Tom Goddard: can't reproduce: In old ChimeraX 1.6.
2:50 PM Ticket #17041 (Mac multi-display crash) closed by Tom Goddard: duplicate
2:50 PM Ticket #17040 (Mac multi-display crash) closed by Tom Goddard: duplicate
2:46 PM Ticket #17038 (Mac multi-display crash) closed by Tom Goddard: duplicate
2:45 PM Ticket #17037 (Mac multi-display crash) closed by Tom Goddard: duplicate
2:45 PM Ticket #17043 (Crash in atom-spec parsing with matchmaker, not a long atomspec.) created by chimerax-bug-report@…: […]
2:41 PM Ticket #17036 (Crash on Mac in deep key event recursion in ChimeraX 1.1.1) closed by Tom Goddard: can't reproduce
2:39 PM Ticket #17035 (Error opening a session file from msgpack: MemoryError: Unable to ...) closed by Tom Goddard: can't reproduce: Seems to be an out-of-memory issue.
2:34 PM Ticket #17033 (OpenGL error at startup in glGetFramebufferAttachmentParameteriv on Windows) closed by Tom Goddard: nonchimerax: Intel graphics driver problem.
2:32 PM Ticket #17032 (Mac multi-display crash) closed by Tom Goddard: duplicate
2:27 PM Ticket #17031 (PermissionError Foldseek search writing mmcif temp file) closed by Tom Goddard: duplicate
2:08 PM Ticket #17029 (Mac multi-display crash) closed by Tom Goddard: duplicate
1:21 PM Ticket #17042 (Update PyOpenXR to latest version) closed by Tom Goddard: fixed: Done. Tested with Sony SR1 display and Quest 3 via SteamLink and Meta …
1:18 PM Ticket #17042 (Update PyOpenXR to latest version) created by goddard@…: […]
12:47 PM Ticket #15813 (Wheel not installing out of bundle dist dir) closed by Zach Pearson: fixed: Worked for me in the latest daily build. I assume it works for you …
12:33 PM Ticket #17041 (Mac multi-display crash) created by chimerax-bug-report@…: […]
12:04 PM Ticket #17040 (Mac multi-display crash) created by chimerax-bug-report@…: […]
8:54 AM Ticket #17039 (ISOLDE flip_if_necessary: AttributeError: 'NoneType' object has no ...) created by chimerax-bug-report@…: […]
6:34 AM Ticket #17038 (Mac multi-display crash) created by chimerax-bug-report@…: […]
5:16 AM Ticket #17037 (Mac multi-display crash) created by chimerax-bug-report@…: […]
4:09 AM Ticket #17036 (Crash on Mac in deep key event recursion in ChimeraX 1.1.1) created by chimerax-bug-report@…: […]
2:32 AM Ticket #17035 (Error opening a session file from msgpack: MemoryError: Unable to ...) created by chimerax-bug-report@…: […]
2:12 AM Ticket #17034 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
12:31 AM Ticket #17033 (OpenGL error at startup in glGetFramebufferAttachmentParameteriv on Windows) created by chimerax-bug-report@…: […]

Mar 6, 2025:

11:55 PM Ticket #17032 (Mac multi-display crash) created by chimerax-bug-report@…: […]
10:37 PM Ticket #17031 (PermissionError Foldseek search writing mmcif temp file) created by daniel.wendscheck@…: […]
10:03 PM Ticket #17030 (File with spaces in path won't open from command-line on Windows) created by Tony Schaefer: […]
4:56 PM Ticket #17029 (Mac multi-display crash) created by chimerax-bug-report@…: […]
1:42 PM 2025-3-6 edited by Tom Goddard: (diff)
1:38 PM Ticket #17025 ('clip' input vs. output) closed by Tom Goddard: not a bug: The clip list command outputs a point on each clip plane […] The …
12:16 PM Ticket #17026 (Graphics crash, macOS 11.7.10, Intel Iris Plus Graphics) closed by Tom Goddard: nonchimerax: Apple Intel graphics driver crash.
11:02 AM Ticket #17028 (Make Twitter and BlueSky email addresses work with ProofPoint) created by Tom Goddard: Setup Twitter and Bluesky email aliases with Proofpoint. Zach says he …
10:42 AM Ticket #17027 (Unknown crash writing mmCIF) closed by pett: can't reproduce
9:11 AM Ticket #17027 (Unknown crash writing mmCIF) created by chimerax-bug-report@…: […]
9:01 AM Ticket #17024 (H-bonds: acc_phi_psi() number of arguments) closed by pett: not a bug
8:59 AM Ticket #17023 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate: Hi Tianyi, Thanks for reporting this problem. It has been fixed for …
7:53 AM Ticket #17026 (Graphics crash, macOS 11.7.10, Intel Iris Plus Graphics) created by chimerax-bug-report@…: […]
7:00 AM Ticket #17025 ('clip' input vs. output) created by Tristan Croll: […]
4:32 AM Ticket #17024 (H-bonds: acc_phi_psi() number of arguments) created by chimerax-bug-report@…: […]

Mar 5, 2025:

5:50 PM Ticket #17023 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by zhangtia22@…: […]
5:14 PM Ticket #17021 (Web services failing) closed by pett: fixed: Seems to be working now.
2:52 PM Ticket #17022 (OpenXR error when started with Sony 3D display turned off) closed by Tom Goddard: nonchimerax: I added an error message saying that if you attempt to start OpenXR …
2:44 PM Ticket #17013 (Crash accessing StructureSeq.structure) closed by pett: duplicate: Attached script crashes 1.9. It does not crash the daily build.
2:42 PM Ticket #17022 (OpenXR error when started with Sony 3D display turned off) created by goddard@…: […]
2:19 PM Ticket #17014 (Coulombic of centroid) closed by pett: fixed: Fix: …
12:46 PM Ticket #17020 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:53 AM Ticket #17021 (Web services failing) created by kaiweiii063@…: […] New Text Document.txt
11:14 AM Ticket #17020 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:48 AM Ticket #17019 (Crash in event loop) closed by pett: can't reproduce
10:33 AM Ticket #17019 (Crash in event loop) created by chimerax-bug-report@…: […]
9:41 AM Ticket #17017 (libGLU.so.1: No such file or directory) closed by Greg Couch: nonchimerax: mesa-libGLU, which provides libGLU.so.1, is a listed dependency of the …
9:37 AM Ticket #17018 (Crash in garbage collection) closed by pett: duplicate
8:55 AM Ticket #17012 (Crash on Mac waking from sleep) closed by pett: duplicate
7:38 AM Ticket #17018 (Crash in garbage collection) created by chimerax-bug-report@…: […]
3:49 AM Ticket #17017 (libGLU.so.1: No such file or directory) created by chimerax-bug-report@…: […]

Mar 4, 2025:

11:44 PM Ticket #17016 (Internal Server Error fetching toolshed info) created by chimerax-bug-report@…: […]
6:06 PM Ticket #17015 (ISOLDE: 'AtomicStructure' object has no attribute '_c_pointer_ref') created by chimerax-bug-report@…: […]
5:30 PM Ticket #16903 (Allow homolog chains with different residue numbering to be associated ...) closed by Tom Goddard: fixed: Added support for using Clustal Omega or custom alignment files to …
5:28 PM Ticket #16962 (Crash on "xr off" after display sleep with Sony Spatial Reality display) closed by Tom Goddard: fixed: Fixed. I added the request_exit_session() and end_session() calls …
3:52 PM Ticket #16164 (ui view fourup: volume_viewer is None) closed by Zach Pearson: fixed: This was fixed on November 12 2024 in commit …
3:51 PM Ticket #17014 (Coulombic of centroid) created by chimerax-bug-report@…: […]
3:27 PM Ticket #17013 (Crash accessing StructureSeq.structure) created by chimerax-bug-report@…: […]
1:17 PM Ticket #17012 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
11:39 AM Ticket #17008 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:07 AM Ticket #17010 (Crash on Mac waking from sleep) closed by pett: duplicate
10:41 AM Ticket #17011 (Fix Python framework symbolic link capitalization for case-sensitive ...) closed by Tom Goddard: fixed: Fixed in March 5, 2025 daily build and newer.
10:41 AM Ticket #17011 (Fix Python framework symbolic link capitalization for case-sensitive ...) created by meyer@…: On Mar 4, 2025, at 7:08 AM, Pete Meyer wrote: Hi Tom, We've noticed …
10:29 AM Dev2025-3-10 created by Tom Goddard
10:28 AM 2025-3-6 created by Tom Goddard
10:27 AM DeveloperMeetings edited by Tom Goddard: (diff)
7:52 AM Ticket #17010 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:04 AM Ticket #17009 (Registration page does not work) created by rmoritz@…: […]

Mar 3, 2025:

5:54 PM Ticket #16581 (ui view fourup: OpenGL texture was not deleted before graphics.Texture ...) closed by Zach Pearson: fixed: It has been
5:52 PM Ticket #16834 (ViewDockX tool page in app but not on web site) closed by Zach Pearson: fixed: Should be working now, I've updated the Rocky 8 build so that it pulls …
5:21 PM Ticket #16265 (Failed notarizations should not be put in downloads) closed by Zach Pearson: fixed
4:18 PM Ticket #16970 (Segmentations: 'NoneType' object has no attribute 'image_colors') closed by Zach Pearson: fixed: I'm not sure how this code was reached here, given that the last …
4:09 PM Ticket #16918 (Bug report segmentations) closed by Zach Pearson: fixed: This should be fixed in tomorrow's build. Please let me know if you …
4:05 PM Ticket #17008 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:54 PM Dev2025-3-3 edited by Tom Goddard: (diff)
3:53 PM Ticket #17004 (Segmentation cursor is None) closed by Zach Pearson: fixed: This is fixed in newer releases (1.9) or daily builds.
2:32 PM Ticket #17006 (Scipy symbol not found) closed by pett: limitation
2:32 PM Ticket #17006 (Scipy symbol not found) reopened by pett
1:45 PM Ticket #17006 (Scipy symbol not found) closed by Zach Pearson: worksforme: Downloaded the most recent daily build and ran all the user's commands …
1:18 PM Ticket #17005 (Crash moving window between screens) closed by Tom Goddard: duplicate
12:12 PM Ticket #17007 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
12:04 PM Ticket #17003 (Find Cavities crash) closed by pett: duplicate
12:01 PM Ticket #17002 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:46 AM Ticket #17001 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:41 AM Ticket #17000 (MemoryError saving session) closed by pett: can't reproduce: Weird that the user was able to save a session just a few commands …
11:29 AM Ticket #16999 (Crash in event loop) closed by pett: can't reproduce
11:28 AM Dev2025-3-3 edited by Tom Goddard: (diff)
11:28 AM Ticket #16998 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett: duplicate
11:27 AM Dev2025-3-3 edited by Tom Goddard: (diff)
11:26 AM Ticket #16997 (Crash in Side View swap_buffers) closed by pett: can't reproduce
11:17 AM Ticket #16995 (Crash in timer execution while modal dialog shown) closed by pett: can't reproduce
11:15 AM Ticket #16994 (Crash in chem_group on Windows) closed by pett: can't reproduce
11:13 AM Ticket #16993 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:46 AM Ticket #16992 (Crash in event loop) closed by pett: can't reproduce: Nothing going on in the stack traces except trying to contact the …
10:07 AM Ticket #17007 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
7:35 AM Ticket #17006 (Scipy symbol not found) created by chimerax-bug-report@…: […]
4:35 AM Ticket #17005 (Crash moving window between screens) created by chimerax-bug-report@…: […]
1:44 AM Ticket #17004 (Segmentation cursor is None) created by chimerax-bug-report@…: […]

Mar 2, 2025:

4:49 PM Ticket #17003 (Find Cavities crash) created by chimerax-bug-report@…: […]
4:35 PM Ticket #17002 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
2:59 PM Ticket #17001 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
5:37 AM Ticket #17000 (MemoryError saving session) created by chimerax-bug-report@…: […]

Mar 1, 2025:

4:19 PM Ticket #16999 (Crash in event loop) created by chimerax-bug-report@…: […]
3:17 PM Ticket #16998 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
1:41 PM Ticket #16997 (Crash in Side View swap_buffers) created by chimerax-bug-report@…: […]
6:58 AM Ticket #16996 (SEQCROW: problem contacting CACTUS web API) created by chimerax-bug-report@…: […]
6:38 AM Ticket #16995 (Crash in timer execution while modal dialog shown) created by chimerax-bug-report@…: […]
2:46 AM Ticket #16994 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
2:43 AM Ticket #16993 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]

Feb 28, 2025:

4:28 PM Ticket #16992 (Crash in event loop) created by chimerax-bug-report@…: […]
1:36 PM Ticket #16773 (ChimeraX bug report submission) closed by Zach Pearson: duplicate: This is a duplicate of #16918. Normally I would close the later …
1:31 PM Ticket #16916 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson: fixed: This should be fixed in recent daily builds.
1:01 PM Ticket #16959 (Segmentations should not import VR at startup) closed by Zach Pearson: fixed: As of …
11:45 AM Ticket #16979 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:25 AM Ticket #16991 (Crash on exit, possibly related to threading) closed by Tom Goddard: duplicate: Unfortunately this is the 3rd report of this crash in 2 weeks all with …
11:16 AM Ticket #16990 (Crash moving window between screens) closed by Tom Goddard: duplicate: The crash report panel you used to report this bug explained what we …
11:09 AM Ticket #16984 (Crash using open/save dialog) closed by pett: can't reproduce
11:08 AM Ticket #16989 (Crash in garbage collection) closed by pett: duplicate
11:07 AM Ticket #16988 (Crash on exit, Qt 6.8.1 multitouch bug) closed by pett: can't reproduce
10:56 AM Ticket #16986 (Crash initializing OpenGL) closed by pett: nonchimerax
10:52 AM Ticket #16985 (Crash processing timer) closed by pett: can't reproduce
10:43 AM Ticket #16991 (Crash on exit, possibly related to threading) created by chimerax-bug-report@…: […]
10:01 AM Ticket #16982 (Crash in event loop with access violation) closed by pett: can't reproduce
9:59 AM Ticket #16981 (Crash in event loop) closed by pett: can't reproduce
9:55 AM Ticket #16980 (Crash on exit in ~QAccessibleCache()) closed by pett: can't reproduce
9:54 AM Ticket #16990 (Crash moving window between screens) created by milos.cvetkovic@…: […]
9:26 AM Ticket #16989 (Crash in garbage collection) created by chimerax-bug-report@…: […]
7:28 AM Ticket #16988 (Crash on exit, Qt 6.8.1 multitouch bug) created by chimerax-bug-report@…: […]
4:28 AM Ticket #16987 (Modeller failure) created by Mitch Murphy: […]
2:07 AM Ticket #16986 (Crash initializing OpenGL) created by chimerax-bug-report@…: […]
12:52 AM Ticket #16985 (Crash processing timer) created by chimerax-bug-report@…: […]

Feb 27, 2025:

8:10 PM Ticket #16984 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
4:06 PM Ticket #16983 (Crash in bug reporter) created by chimerax-bug-report@…: […]
3:19 PM 2025-2-27 edited by Tom Goddard: (diff)
3:06 PM Ticket #16978 (MemoryError saving maps in sessions) closed by Tom Goddard: limitation: Out of memory saving a session with many maps.
3:03 PM Ticket #16976 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
3:02 PM Ticket #16974 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
2:37 PM Ticket #16982 (Crash in event loop with access violation) created by chimerax-bug-report@…: […]
2:18 PM Ticket #16981 (Crash in event loop) created by chimerax-bug-report@…: […]
2:12 PM NIAID2024 edited by Elaine Meng: (diff)
1:59 PM NIAID2024 edited by Elaine Meng: (diff)
1:55 PM Ticket #16980 (Crash on exit in ~QAccessibleCache()) created by chimerax-bug-report@…: […]
1:30 PM NIAID2024 edited by Elaine Meng: (diff)
12:56 PM Ticket #16979 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:26 PM ChangeLog edited by Elaine Meng: (diff)
12:26 PM ChangeLog edited by Elaine Meng: (diff)
12:24 PM ChangeLog edited by Elaine Meng: (diff)
10:55 AM Ticket #16977 (Crash showing open-file dialog while under remote control) closed by pett: can't reproduce
10:37 AM Ticket #16978 (MemoryError saving maps in sessions) created by chimerax-bug-report@…: […]
9:30 AM Ticket #16977 (Crash showing open-file dialog while under remote control) created by chimerax-bug-report@…: […]
8:43 AM Ticket #16973 (Crash moving window between screens) closed by pett: duplicate
7:54 AM Ticket #16976 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:13 AM Ticket #16975 (X11 connection broke) created by chimerax-bug-report@…: […]

Feb 26, 2025:

5:36 PM ChangeLog edited by Elaine Meng: (diff)
5:26 PM Ticket #16833 ("devel" help page) closed by Elaine Meng: fixed
4:37 PM Ticket #16974 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:50 PM Ticket #16973 (Crash moving window between screens) created by chimerax-bug-report@…: […]
2:45 PM Ticket #16627 (ChimeraX with Qt 6.8 crashes at exit nearly every time on Mac) closed by Zach Pearson: fixed
12:35 PM Ticket #16969 (Foldseek: list index out of range) closed by Tom Goddard: fixed: Fixed in Feb 27, 2025 daily build. Foldseek search gives this error …
12:15 PM Ticket #16968 (Session restore: Similar Structures: 'NoneType' object has no ...) closed by Tom Goddard: fixed: Fixed. Yikes. Session save fails if the Similar Structures gui is …
12:07 PM Ticket #16966 (Graphics crash, macOS 15.2, Intel Iris Plus Graphics 655) closed by Tom Goddard: nonchimerax: Apple Intel graphics driver crash.
11:51 AM Ticket #16965 (ArrayMemoryError in volume splitbyzone) closed by Tom Goddard: limitation: The user had 22 open maps that were not saved in separate map files. …
11:27 AM Ticket #16972 ('#' character in sequence name of Modeller job) closed by pett: duplicate: Hi Manuel, Thanks for reporting this problem. It was fixed a little …
11:06 AM Ticket #16971 (Session save: No bundle information for chimerax.core.tasks.Tasks) closed by pett: duplicate: Hi Chiara, Thanks for reporting this problem. It was fixed in the …
9:53 AM Ticket #16972 ('#' character in sequence name of Modeller job) created by mllanos@…: […]
9:51 AM Ticket #16971 (Session save: No bundle information for chimerax.core.tasks.Tasks) created by cjg279@…: […]
9:32 AM Ticket #16967 (MemoryError opening mmCIF file) closed by pett: duplicate
9:23 AM Ticket #16964 (Crash in garbage collection) closed by pett: duplicate
9:22 AM Ticket #16963 (Crash on Mac waking from sleep) closed by pett: duplicate
9:21 AM Ticket #16961 (Problem setting background color from Color Actions) closed by pett: duplicate: Hi Mojgan, Thanks for reporting this problem. It was fixed in the …
8:41 AM Ticket #16970 (Segmentations: 'NoneType' object has no attribute 'image_colors') created by chimerax-bug-report@…: […]
7:11 AM Ticket #16969 (Foldseek: list index out of range) created by lukas.bauer@…: […] ChopChopMF_V0.2.zip
6:10 AM Ticket #16968 (Session restore: Similar Structures: 'NoneType' object has no ...) created by chimerax-bug-report@…: […]
4:01 AM Ticket #16967 (MemoryError opening mmCIF file) created by chimerax-bug-report@…: […]
1:09 AM Ticket #16966 (Graphics crash, macOS 15.2, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…: […]

Feb 25, 2025:

11:49 PM Ticket #16965 (ArrayMemoryError in volume splitbyzone) created by chimerax-bug-report@…: […]
10:31 PM Ticket #16964 (Crash in garbage collection) created by chimerax-bug-report@…: […]
5:36 PM Ticket #16791 (Windows Subsystem for Linux crash at startup: malloc corruption) closed by Greg Couch: limitation: Sorry, WSL is not supported. If it works, great, if not, then that is …
5:27 PM Ticket #16963 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:26 PM Ticket #16962 (Crash on "xr off" after display sleep with Sony Spatial Reality display) created by goddard@…: […]
4:28 PM Ticket #16961 (Problem setting background color from Color Actions) created by asadi1@…: […]
1:28 PM Ticket #16960 (Dock Prep "save MOL2" not working) closed by pett: fixed: Fix: …
1:10 PM Ticket #16960 (Dock Prep "save MOL2" not working) created by alphataubio@…: per summary
12:44 PM Ticket #16959 (Segmentations should not import VR at startup) created by goddard@…: […]
11:44 AM Dev2025-3-3 created by Tom Goddard
11:42 AM Ticket #16958 (Toolshed adds random characters to wheel file) created by yuval.abeles@…: Yuval Abeles submitted version 0.1.2 of his EMAlign bundle to Toolshed …
11:34 AM 2025-2-27 created by Tom Goddard
11:33 AM 2025-2-20 edited by Tom Goddard: (diff)
11:27 AM DeveloperMeetings edited by Tom Goddard: (diff)
11:16 AM Ticket #16957 (Crash using open/save dialog) closed by pett: duplicate
11:16 AM Ticket #16956 (Crash using open/save dialog) closed by pett: duplicate
11:15 AM Ticket #16955 (Crash using open/save dialog) closed by pett: can't reproduce: Hi Julia, Thanks for reporting this problem. I would recommend …
10:44 AM Ticket #16954 (Crash in swap_buffers after various Qt context problems) closed by pett: can't reproduce: Probable remote display issues
10:38 AM Ticket #16953 (Crash in chem_group on Windows) closed by pett: can't reproduce
4:49 AM Ticket #16957 (Crash using open/save dialog) created by julia.charl@…: […]
4:49 AM Ticket #16956 (Crash using open/save dialog) created by julia.charl@…: […]
4:49 AM Ticket #16955 (Crash using open/save dialog) created by julia.charl@…: […]
3:41 AM Ticket #16954 (Crash in swap_buffers after various Qt context problems) created by chimerax-bug-report@…: […]
2:27 AM Ticket #16953 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
2:13 AM Ticket #16952 (Permission denied writing command history) created by chimerax-bug-report@…: […]

Feb 24, 2025:

8:02 PM Ticket #16951 (Unresponsive on Windows) created by 13251508757@…: […] ChimeraX.exe
5:18 PM Ticket #16950 (Allow residue labels to be position at C-alpha atom) closed by Tom Goddard: fixed: Done. The label command now has a "position" keyword option with …
5:15 PM Ticket #16950 (Allow residue labels to be position at C-alpha atom) created by Elaine Meng: I wish there was an option or preference or attribute for …
4:51 PM Dev2025-2-24 edited by Tom Goddard: (diff)
2:49 PM Dev2025-2-24 edited by Tom Goddard: (diff)
11:49 AM Ticket #16948 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson: fixed: This is fixed in the daily build.
11:34 AM Ticket #16945 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:32 AM Ticket #16949 (Remote display failure) closed by pett: limitation
11:27 AM Ticket #16947 (Crash on Mac waking from sleep) closed by pett: duplicate
11:25 AM Ticket #16946 (Crash in garbage collection) closed by pett: duplicate: Hi Malene, Thanks for reporting this problem. It has been fixed in …
11:20 AM Ticket #16944 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:19 AM Ticket #16941 (ArrayMemoryError saving session with maps) closed by Tom Goddard: limitation: They got an out of memory error trying to allocate a 90 Mbyte numpy …
11:05 AM Ticket #16940 (Crash in event loop) closed by pett: can't reproduce
11:02 AM Ticket #16935 (openvr.error_code.CompositorError_IsNotSceneApplication) closed by Tom Goddard: wontfix: The user tried to start both an OpenVR and OpenXR connection (vr true) …
11:01 AM Ticket #16939 (Crash in event loop) closed by pett: can't reproduce: A couple of weird things about this one. They use a "CavitOmiX" …
10:45 AM Ticket #16938 (No output from Modeller) closed by pett: can't reproduce: Never got a web service ID. Working fine for me at this moment.
10:35 AM Ticket #16937 (Crash in chem_group on Windows) closed by pett: can't reproduce
10:29 AM Ticket #16949 (Remote display failure) created by chimerax-bug-report@…: […]
10:01 AM Ticket #16948 ('ArrayGridData' object has no attribute 'dicom_data') created by jinhui.dong.1@…: […]
8:10 AM Ticket #16947 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:09 AM Ticket #16946 (Crash in garbage collection) created by mlurbanus@…: […]

Feb 23, 2025:

10:09 PM Ticket #16945 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:43 PM Ticket #16944 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
8:11 AM Ticket #16943 (Problem creating saccharine input) created by maya.bhat@…: […] saccharine.inp
3:58 AM Ticket #16942 (Unknown error) created by mai.h.elnaggar@…: […]
3:32 AM Ticket #16941 (ArrayMemoryError saving session with maps) created by chimerax-bug-report@…: […]

Feb 22, 2025:

7:10 PM Ticket #16940 (Crash in event loop) created by chimerax-bug-report@…: […]
2:50 PM Ticket #16939 (Crash in event loop) created by chimerax-bug-report@…: […]
12:59 PM Ticket #16938 (No output from Modeller) created by chimerax-bug-report@…: […]
5:39 AM Ticket #16937 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]

Feb 21, 2025:

6:55 PM Ticket #16936 (Crash on exit) created by Elaine Meng: […]
5:32 PM phenix-2-27-25 edited by pett: (diff)
5:30 PM phenix-2-27-25 edited by pett: (diff)
5:30 PM phenix-2-27-25 edited by pett: (diff)
5:23 PM phenix-2-27-25 edited by pett: (diff)
5:11 PM phenix-2-27-25 edited by pett: (diff)
5:07 PM phenix-2-27-25 edited by pett: (diff)
4:29 PM phenix-2-27-25 created by pett
4:28 PM Features edited by pett: (diff)
1:19 PM Ticket #16935 (openvr.error_code.CompositorError_IsNotSceneApplication) created by chimerax-bug-report@…: […]
11:16 AM Ticket #16932 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 645) closed by Tom Goddard: nonchimerax: Apple Intel graphics driver crash.
11:14 AM Ticket #16931 (Problem saving segmentations) closed by Tom Goddard: wontfix: The user tried to save a segmentation done with Zach's segmentation …
11:07 AM Ticket #16930 (Crash moving window between screens) closed by Tom Goddard: duplicate: The bug report panel you used to submit this ChimeraX crash explained …
11:03 AM Ticket #16927 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:02 AM Ticket #16934 (Failed to initialize graphics backend for OpenGL) closed by pett: can't reproduce
11:02 AM Ticket #16926 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate
11:00 AM Ticket #16934 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…: […]
10:57 AM Ticket #16933 (Crash on Mac waking from sleep) closed by pett: duplicate
10:44 AM Ticket #16933 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
9:55 AM Ticket #16929 (Crash in garbage collection) closed by pett: duplicate
9:55 AM Ticket #16928 (Crash in event loop) closed by pett: can't reproduce
9:15 AM Ticket #16932 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…: […]
8:27 AM Ticket #16931 (Problem saving segmentations) created by chimerax-bug-report@…: […]
7:08 AM Ticket #16930 (Crash moving window between screens) created by silvia.triguis20@…: […]
2:25 AM Ticket #16929 (Crash in garbage collection) created by chimerax-bug-report@…: […]
1:59 AM Ticket #16928 (Crash in event loop) created by chimerax-bug-report@…: […]
12:40 AM Ticket #16927 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Feb 20, 2025:

5:49 PM Ticket #16926 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:18 PM Ticket #16924 (Crash moving window between screens) closed by Tom Goddard: duplicate: This crash is caused by a Qt window toolkit bug on Mac with more than …
5:16 PM Ticket #16923 (Many OpenGL errors) closed by Tom Goddard: nonchimerax: Either a remote display problem or OpenGL driver problem.
4:54 PM Ticket #16912 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX report a bug panel that you used to submit this bug …
3:39 PM Dev2025-2-24 edited by pett: (diff)
3:35 PM Ticket #16899 (Crash in chem_group on Windows) closed by pett: can't reproduce
2:33 PM Dev2025-2-24 edited by pett: (diff)
2:23 PM Dev2025-2-24 edited by pett: (diff)
2:19 PM Ticket #16925 (Crash in python_instances_of_class) closed by pett: duplicate
2:15 PM Ticket #16925 (Crash in python_instances_of_class) created by chimerax-bug-report@…: […]
1:46 PM Ticket #16922 (Graphics driver crash repainting widget) closed by pett: can't reproduce
1:44 PM Ticket #16921 (Crash in event loop) closed by pett: can't reproduce
1:38 PM Ticket #16920 (ChimeraX Model Joining) closed by pett: not a bug: Forwarded to chimerax-users mailing list where it was answered
1:36 PM Ticket #16919 (Crash drawing status bar) closed by pett: can't reproduce
12:03 PM Ticket #16924 (Crash moving window between screens) created by nferraro@…: […]
11:05 AM Ticket #16923 (Many OpenGL errors) created by chimerax-bug-report@…: […]
10:59 AM Ticket #16917 (Crash on Mac waking from sleep) closed by pett: duplicate
10:56 AM Ticket #16915 (Crash opening PDB file) closed by pett: can't reproduce
10:54 AM Ticket #16914 (Crash in open-file dialog) closed by pett: can't reproduce: Hi Kui, Thanks for reporting this problem. It is a problem in the Qt …
10:40 AM Ticket #16922 (Graphics driver crash repainting widget) created by chimerax-bug-report@…: […]
10:37 AM Ticket #16913 (build atom names) closed by pett: not a bug: Hi Matt, When you create the initial helium atom, its name is "He". …
9:24 AM Ticket #16921 (Crash in event loop) created by chimerax-bug-report@…: […]
8:31 AM Ticket #16920 (ChimeraX Model Joining) created by claire.nieder@…: […]
6:39 AM Ticket #16919 (Crash drawing status bar) created by chimerax-bug-report@…: […]
6:01 AM Ticket #16918 (Bug report segmentations) created by g.zanetti@…: […] Screenshot 2025-02-20 at 13.55.46.png …
4:03 AM Ticket #16917 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:55 AM Ticket #16916 ('MRCGrid' object has no attribute 'dicom_data') created by g.zanetti@…: […]
12:32 AM Ticket #16915 (Crash opening PDB file) created by chimerax-bug-report@…: […]

Feb 19, 2025:

7:46 PM Dev2025-2-24 edited by Tom Goddard: (diff)
7:21 PM Ticket #16914 (Crash in open-file dialog) created by xukui@…: […]
2:50 PM Ticket #16913 (build atom names) created by matt.goff@…: […]
11:58 AM Ticket #16906 (Tools gone after running Python script) closed by pett: fixed: I'm glad you were able to track down the problem! --Eric
11:41 AM Ticket #16912 (Crash on Mac waking from sleep) created by hrishikesh.das@…: […]
11:21 AM Ticket #16904 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard: nonchimerax: Graphics driver problem. Ancient ATI Radeon HD 4300/4500 Series from 2008.
9:57 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) closed by pett: duplicate
9:56 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) closed by pett: duplicate
9:55 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) closed by pett: duplicate
9:54 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) closed by pett: can't reproduce: Anti-virus software interference?
9:38 AM Ticket #16907 (Crash opening mmCIF) closed by pett: can't reproduce
9:31 AM Ticket #16905 (Hang after selection) closed by pett: can't reproduce
9:25 AM Ticket #16901 (MemoryError opening MD trajectory) closed by pett: limitation
9:22 AM Ticket #16900 (Crash getting secondary structure ID) closed by pett: can't reproduce
9:22 AM Ticket #16911 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…: […]
9:19 AM Ticket #16910 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…: […]
9:19 AM Ticket #16909 (Intermittent "Permission denied" writing commands history temp file) created by chimerax-bug-report@…: […]
9:19 AM Ticket #16908 (Intermittent "Permission denied" writing temp commands history file) created by chimerax-bug-report@…: […]
9:09 AM Ticket #16898 (Crash on Mac waking from sleep) closed by pett: duplicate
7:52 AM Ticket #16907 (Crash opening mmCIF) created by chimerax-bug-report@…: […]
7:38 AM Ticket #16906 (Tools gone after running Python script) created by cuhkliyanxun@…: […]
4:43 AM Ticket #16905 (Hang after selection) created by chimerax-bug-report@…: […]

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