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Opened 7 months ago
Closed 7 months ago
#17122 closed defect (can't reproduce)
Crash in QWebEngine backend
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000000038fb3b000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000038eb2f000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000038db23000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000038cb17000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000038bb0b000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000038aaff000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000389af3000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000388ae7000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000387adb000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000386acf000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000385ac3000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000384ab7000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000383aab000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000382a9f000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000381a93000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000000380a87000 (most recent call first):
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/private/var/folders/nf/h8dr_s152_b61ts86dft7z0c0000gp/T/AppTranslocation/FEB3FAAA-8A2E-4ABF-A660-392805EE8AE8/d/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
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Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, chimerax.mlp._mlp (total: 54)
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"usedImages" : [
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6679912448,
"size" : 532288,
"uuid" : "398a133c-9bcb-317f-a064-a40d3cea3c0f",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
}
],
"sharedCache" : {
"base" : 6679101440,
"size" : 4865835008,
"uuid" : "5700d77a-6190-36e0-884d-fee6d586d62f"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=606.7M resident=0K(0%) swapped_out_or_unallocated=606.7M(100%)\nWritable regions: Total=4.2G written=2051K(0%) resident=2051K(0%) swapped_out=0K(0%) unallocated=4.2G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 2208K 42 \nCG raster data 384K 8 \nColorSync 640K 32 \nCoreAnimation 3264K 126 \nCoreGraphics 48K 3 \nCoreUI image data 5232K 39 \nFoundation 48K 2 \nKernel Alloc Once 1424K 4 \nMALLOC 3.1G 143 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 57.0M 62 \nStack 507.0M 62 \nVM_ALLOCATE 269.7M 218 \nVM_ALLOCATE (reserved) 352.0M 5 reserved VM address space (unallocated)\n__DATA 11K 1 \n__DATA_CONST 24K 1 \n__DATA_DIRTY 7K 1 \n__LINKEDIT 606.2M 1 \n__TEXT 520K 1 \n__TPRO_CONST 272K 1 \ndyld private memory 32K 2 \nmapped file 632.5M 676 \nowned unmapped memory 30.2M 1 \npage table in kernel 2051K 1 \nshared memory 5840K 46 \n=========== ======= ======= \nTOTAL 5.5G 1507 \nTOTAL, minus reserved VM space 5.1G 1507 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain"
}
},
"logWritingSignature" : "cce115b394edb402e3011c3c18bcd9121b08464b",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "661464ecda55e5192b100804",
"factorPackIds" : {
},
"deploymentId" : 240000005
},
{
"rolloutId" : "654439cdafbf5b61207873a9",
"factorPackIds" : {
},
"deploymentId" : 240000004
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/luyenhoang/Downloads/ApoE Chimp Structure.cif"
Chain information for ApoE Chimp Structure.cif #1
---
Chain | Description | UniProt
A | Apolipoprotein E | APOE_PANTR 1-317
Color ApoE Chimp Structure.cif by residue attribute pLDDT_score
> color byattribute r:pLDDT_score #1 palette red:yellow:green
2536 atoms, 317 residues, atom pLDDT_score range 28.4 to 97.9
> color byattribute r:pLDDT_score #1 palette red:yellow:green
2536 atoms, 317 residues, atom pLDDT_score range 28.4 to 97.9
> open "/Users/luyenhoang/Downloads/ApoE Human Structure.cif"
Chain information for ApoE Human Structure.cif #2
---
Chain | Description | UniProt
A | Apolipoprotein E | APOE_HUMAN 1-317
Color ApoE Human Structure.cif by residue attribute pLDDT_score
> color byattribute r:pLDDT_score #2 palette red:yellow:green
2539 atoms, 317 residues, atom pLDDT_score range 32.5 to 98.2
> color byattribute r:pLDDT_score #2 palette red:yellow:green
2539 atoms, 317 residues, atom pLDDT_score range 32.5 to 98.2
> open "/Users/luyenhoang/Downloads/ApoE Mouse Structure.cif"
Chain information for ApoE Mouse Structure.cif #3
---
Chain | Description | UniProt
A | Apolipoprotein E | APOE_MOUSE 1-311
Color ApoE Mouse Structure.cif by residue attribute pLDDT_score
> hide #3 models
> hide #2 models
> select add #1
2536 atoms, 2571 bonds, 317 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
2536 atoms, 2571 bonds, 317 residues, 1 model selected
> select subtract #1
Nothing selected
> color #2 #0fe125ff
> color #1 #e10800ff
> color #1 #e106ceff
> show #2 models
> show #3 models
> color #1 #e10300ff
> hide #3 models
> hide #2 models
> color #1 bypolymer
> color #1 byhetero
> color #1 bynucleotide
> rainbow #1
> coulombic #1
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for ApoE Chimp Structure.cif_A SES surface #1.1: minimum,
-16.61, mean -1.28, maximum 15.95
To also show corresponding color key, enter the above coulombic command and
add key true
> mlp #!1
Map values for surface "ApoE Chimp Structure.cif_A SES surface": minimum
-26.94, mean -4.254, maximum 22.58
To also show corresponding color key, enter the above mlp command and add key
true
> color bfactor #!1
2536 atoms, 317 residues, 1 surfaces, atom bfactor range 28.5 to 97.9
> hbonds #!1 reveal true
413 hydrogen bonds found
> color #!1 bypolymer
> color #!1 byhetero
> nucleotides #!1 atoms
> style nucleic & #!1 stick
Changed 0 atom styles
> nucleotides #!1 fill
> style nucleic & #!1 stick
Changed 0 atom styles
> color bfactor #!1
2536 atoms, 317 residues, 1 surfaces, atom bfactor range 28.5 to 97.9
> mlp #!1
Map values for surface "ApoE Chimp Structure.cif_A SES surface": minimum
-26.94, mean -4.254, maximum 22.58
To also show corresponding color key, enter the above mlp command and add key
true
> coulombic #!1
Coulombic values for ApoE Chimp Structure.cif_A SES surface #1.1: minimum,
-16.61, mean -1.28, maximum 15.95
To also show corresponding color key, enter the above coulombic command and
add key true
> color #!1 bynucleotide
> color #!1 byhetero
Alignment identifier is 1/A
Alignment identifier is 2/A
Alignment identifier is 3/A
> hide #!1 models
> show #!1 models
> show #2 models
> hide #2 models
> nucleotides #!1 atoms
> style nucleic & #!1 stick
Changed 0 atom styles
> style #!1 sphere
Changed 2536 atom styles
> style #!1 sphere
Changed 2536 atom styles
> undo
> interfaces #!1 & ~solvent
0 buried areas:
> hide #!1 atoms
> show #!1 atoms
> show #!1 cartoons
> show #!1 surfaces
> hide #!1 cartoons
> show #!1 cartoons
> color #!1 bypolymer
> color #!1 bychain
> hide #!1 target m
> hide #4 models
> show #!1 models
> show #2 models
> show #3 models
> hide #!1 models
> set bgColor white
> set bgColor black
> lighting simple
> lighting soft
> lighting full
> ui tool show "Selection Inspector"
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M4 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac16,5
Model Number: Z1FW0008BLL/A
Chip: Apple M4 Max
Total Number of Cores: 16 (12 performance and 4 efficiency)
Memory: 64 GB
System Firmware Version: 11881.81.4
OS Loader Version: 11881.81.4
Software:
System Software Overview:
System Version: macOS 15.3.2 (24D81)
Kernel Version: Darwin 24.3.0
Time since boot: 5 days, 13 hours, 57 minutes
Graphics/Displays:
Apple M4 Max:
Chipset Model: Apple M4 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 40
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 7 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in QWebEngine backend |
comment:2 by , 7 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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