Timeline



Jan 31, 2025:

4:55 PM Ticket #16757 (Crash running save dialog) created by chimerax-bug-report@…
[…]
2:03 PM Ticket #16756 (Crash in py_instance) created by chimerax-bug-report@…
[…]
12:51 PM Ticket #16750 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:06 PM ChangeLog edited by Elaine Meng
(diff)
11:58 AM Ticket #16755 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
11:04 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) closed by pett
can't reproduce: Hard to say if its Qt's builtin handling of mouseMoveEvent, or our …
10:44 AM Ticket #16754 (Bundle ChimeraX-NMRSTAR has no module) created by chimerax-bug-report@…
[…]
9:56 AM Ticket #16753 (Crash in QGraphicsView::mouseMoveEvent) created by chimerax-bug-report@…
[…]
9:25 AM Ticket #16752 (Crash closing QDockWidget) closed by pett
can't reproduce
9:19 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) closed by pett
can't reproduce
9:15 AM Ticket #16749 (Crash saving mmCIF) closed by pett
can't reproduce
9:12 AM Ticket #16747 (Crash on exit) closed by pett
duplicate
9:10 AM Ticket #16746 (Crash moving window between screens) closed by pett
duplicate
7:06 AM Ticket #16752 (Crash closing QDockWidget) created by chimerax-bug-report@…
[…]
5:48 AM Ticket #16751 (Crash accessing Structure._graphics_changeds) created by chimerax-bug-report@…
[…]
4:32 AM Ticket #16750 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
4:31 AM Ticket #16749 (Crash saving mmCIF) created by chimerax-bug-report@…
[…]
2:28 AM Ticket #16748 (alphafold pae does not accept wild cards for file patterns) created by matthias.vorlaender@…
[…]

Jan 30, 2025:

6:51 PM Ticket #16747 (Crash on exit) created by chimerax-bug-report@…
[…]
5:48 PM Ticket #16746 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
4:24 PM Ticket #16743 (Crash copying StructureSeq) closed by pett
fixed: When copying a StructureSeq where .structure is None (i.e. really a …
3:58 PM Ticket #16062 (ChimeraX bug report submission) closed by Zach Pearson
fixed: This was fixed for the 1.9 release.
3:33 PM Ticket #16744 (Crash copying StructureSeq) closed by pett
duplicate: Duplicate of #16743
2:54 PM Ticket #16745 (Warning when mmCIF metric table used for an AlphaFold 3 ligand) created by goddard@…
[…] 8xps_a_zmr_jan30_model.cif
1:14 PM Ticket #16524 (Flatpak success/fail message is wrong in nightly emails) closed by Zach Pearson
fixed: The script to determine the build age was reading a variable with a …
12:02 PM Ticket #16741 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:51 AM Ticket #16739 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:35 AM Ticket #6824 (No valid OpenGL context on Linux) closed by Zach Pearson
fixed: This was caused by running ChimeraX in a Wayland environment before we …
11:24 AM Ticket #16357 (ui view fourup: ZeroDivisionError) closed by Zach Pearson
fixed: You'll no longer get a series of tracebacks if you open plane viewers …
10:31 AM Ticket #16740 (Unable to restore session: need to update bundle) closed by pett
not a bug: Hi Irina, Thanks for reporting this problem. The message "update …
10:15 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') closed by pett
duplicate: Fixed as of ArtiaX 0.4.1 (this ticket has 0.3)
10:09 AM Ticket #16744 (Crash copying StructureSeq) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #16743 (Crash copying StructureSeq) created by chimerax-bug-report@…
[…]
9:32 AM Ticket #16742 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by chimerax-bug-report@…
[…]
8:15 AM Ticket #16741 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:09 AM Ticket #16740 (Unable to restore session: need to update bundle) created by irina.i.serysheva@…
[…]
12:52 AM Ticket #16739 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 29, 2025:

8:03 PM Ticket #16738 (SEQCROW: _read_nbo_coeffs: list index out of range) created by ud21003@…
[…]
6:15 PM Ticket #16737 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
5:56 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) closed by pett
can't reproduce
5:48 PM Ticket #16533 (DLL load failed while importing _pyKVFinder: The specified module ...) closed by pett
can't reproduce: Maybe something wonky with PYTHONPATH?
5:47 PM Ticket #16737 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:47 PM Ticket #16736 (Crash fetching from Toolshed or using save dialog) created by chimerax-bug-report@…
[…]
5:24 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') closed by Tom Goddard
duplicate: Fixed a few days ago. User press the Similar Structures panel …
5:22 PM Ticket #16735 (Crash fetching from Toolshed) closed by pett
duplicate: Again, how was the user able to carry out so many operations if the …
5:18 PM Ticket #16733 (Crash fetching from Toolshed) closed by pett
duplicate
5:16 PM Ticket #16732 (Find Cavities crash) closed by pett
duplicate: Duplicate of #16461
5:15 PM Ticket #16731 (Restore new session in old ChimeraX) closed by pett
limitation
4:35 PM Ticket #16721 (Log something when blastprotein finishes) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/b8e236a67c18d6810e2f6fe9e5fad5
3:35 PM Ticket #16735 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
2:47 PM Ticket #16734 (Foldseek: 'NoneType' object has no attribute 'query_chain') created by chimerax-bug-report@…
[…]
2:43 PM Ticket #16733 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
12:28 PM Ticket #16732 (Find Cavities crash) created by chimerax-bug-report@…
[…]
12:03 PM Ticket #16568 (matchmaker with altlocs shown: No matrix compatible with both ...) closed by pett
fixed: Fix: …
12:01 PM Ticket #16729 (VIPERdb file: Unknown symmetry group) closed by Tom Goddard
fixed: Fixed in daily build dated Jan 30, 2025 or later. Apparently opening …
11:47 AM Ticket #16731 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
11:33 AM Ticket #16726 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:29 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:28 AM Ticket #16723 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
10:07 AM Ticket #16730 (Crash moving window between screens) closed by pett
duplicate
10:04 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) closed by Greg Couch
limitation: Please file a bug with sbgrid. We don't control how they install …
10:00 AM Ticket #16730 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #16725 (Crash in event loop) closed by pett
can't reproduce: Some occurrences of "Called accessibilityLabel on invalid object" in …
8:29 AM Ticket #16729 (VIPERdb file: Unknown symmetry group) created by rojas258@…
[…]
7:57 AM Ticket #16728 (SBGrid install of 1.9 fails to launch; 1.8 works) created by pedro.alzari@…
[…]
5:55 AM Ticket #16727 (ArtiaX: various errors) created by chimerax-bug-report@…
[…]
4:05 AM Ticket #16726 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
3:29 AM Ticket #16725 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:23 AM Ticket #16724 (Graphics crash, macOS 13.7.1, Intel Iris Plus Graphics 650) created by chimerax-bug-report@…
[…]

Jan 28, 2025:

11:12 PM Ticket #16723 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:39 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) closed by Tom Goddard
not a bug: If you have any suggestions to improve the handling of the mouse …
6:28 PM Ticket #16722 (ISOLDE install errors, wrong version of Clipper) created by goddard@…
[…]
6:19 PM Ticket #16720 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
6:16 PM Ticket #16721 (Log something when blastprotein finishes) created by Elaine Meng
It looks tricky to do something generically for web service jobs …
6:00 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) closed by pett
duplicate
5:56 PM Ticket #16720 (Crash on Mac waking from sleep) created by goddard@…
[…]
5:33 PM Ticket #16719 (Shift-"Move atoms" eventually becomes zoom) created by tmckeith@…
As a followup to #16705: "By the way, there’s an odd bug that shows …
5:31 PM Ticket #16705 (Crash getting StructureSeq.structure) closed by pett
can't reproduce: Hi Tim, No problem -- I imagine I'll get other reports and maybe I …
12:57 PM Ticket #16718 (DiffFit: 'DiffFitTool' object has no attribute 'vol') created by chimerax-bug-report@…
[…]
12:33 PM Ticket #16717 (DiffFit: sim_dir: The system cannot find the path specified) created by chimerax-bug-report@…
[…]
12:04 PM Ticket #16658 ('ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16657 ('MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16603 (ArrayGridData' object has no attribute 'dicom_data') closed by Zach Pearson
duplicate: See #16575
12:04 PM Ticket #16575 (Orthoplanes: 'MRCGrid' object has no attribute 'dicom_data') closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/2b23b13c4745f3f52d820bef99319d
11:54 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:53 AM Dev2025-2-3 created by Tom Goddard
11:52 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:47 AM Ticket #16711 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:47 AM Ticket #16710 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:45 AM Ticket #16716 (DiffFit: sim_dir: The system cannot find the path specified) created by chimerax-bug-report@…
[…]
11:43 AM Ticket #16715 (Add species name filter for similar structures and BLAST searches) created by matthias.vorlaender@…
Matthias Vorlander asked for limiting BLAST search to a specified …
11:30 AM Ticket #16713 (Crash in QDockWidget event handling) closed by pett
can't reproduce
11:20 AM Ticket #16709 (Crash fetching from Toolshed) closed by pett
duplicate
11:18 AM Ticket #16708 (Crash fetching from Toolshed) closed by pett
duplicate
11:08 AM Ticket #16714 (Logging wrong for non-existent subcommands) created by pett
For commands with only subcommands, if a non-existent subcommand is …
10:13 AM Ticket #16713 (Crash in QDockWidget event handling) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #16706 (Crash on Mac waking from sleep) closed by pett
duplicate
9:47 AM Ticket #16712 (Copick: 'Session' object has no attribute 'ArtiaX') created by kbonjour@…
[…]
9:45 AM Ticket #16711 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #16710 (Crash moving window between screens) created by chimerax-bug-report@…
[…]

Jan 27, 2025:

4:59 PM Ticket #16682 (Volume raycasting with orthoplanes: Shader compile failure) closed by Zach Pearson
fixed: I think this is fixed by …
4:16 PM Dev2025-1-27 edited by Tom Goddard
(diff)
3:02 PM Dev2025-1-27 created by Tom Goddard
2:29 PM Ticket #16569 (Presets / Initial Styles / Original Look does not change tube helices ...) closed by pett
fixed: Okay, "fixed". "Fixed" is in quotes because although the tube helices …
2:27 PM Ticket #16698 (Similar Structures: self.results is None) closed by Tom Goddard
fixed: Fixed. Made Ligands and Clusters button show message in error panel …
2:21 PM Ticket #16709 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
1:46 PM Ticket #16697 (No Contacts output) closed by pett
fixed: Fixed. Fix in the next daily build. Again, thanks for reporting the …
1:36 PM Ticket #16708 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
1:28 PM Ticket #16707 (Crash fetching from Toolshed) created by chimerax-bug-report@…
[…]
1:21 PM Ticket #16706 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:14 PM Ticket #16705 (Crash getting StructureSeq.structure) created by tmckeith@…
[…]
1:05 PM Ticket #16704 (ISOLDE: Unparameterised residue detected) created by chimerax-bug-report@…
[…]
12:59 PM Ticket #16699 (Window moved between screens(?)) closed by Tom Goddard
duplicate: In the ChimeraX Report a Bug panel it showed the following text in red …
12:55 PM Ticket #16702 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
12:54 PM Ticket #16691 (Crash moving window between screens(?)) closed by Tom Goddard
duplicate
12:00 PM Ticket #16703 (ISOLDE/OpenMM in 1.10) closed by pett
fixed: There are _lot_ of ISOLDE releases. Added the requirement to the 1.9 …
11:11 AM Ticket #16701 (Crash opening PDB file) closed by pett
can't reproduce
11:10 AM Ticket #16700 (Crash opening PDB file) closed by pett
can't reproduce
11:02 AM Ticket #16696 (Restore new session in old ChimeraX) closed by pett
limitation
11:01 AM Ticket #16695 (delete all: OSError: exception: access violation) closed by pett
duplicate
11:00 AM Ticket #16694 (delete all: OSError: exception: access violation) closed by pett
duplicate: The later errors indicate that the Python-object-tracking table in the …
10:57 AM Ticket #16693 (delete all: OSError: exception: access violation) closed by pett
can't reproduce
10:51 AM Ticket #16692 (Crash closing main window(?)) closed by pett
can't reproduce
7:58 AM Ticket #16703 (ISOLDE/OpenMM in 1.10) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #16702 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 26, 2025:

9:54 PM Ticket #16701 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
9:47 PM Ticket #16700 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
4:10 PM Ticket #16699 (Window moved between screens(?)) created by sphulera@…
[…]
3:19 PM Ticket #16698 (Similar Structures: self.results is None) created by chimerax-bug-report@…
[…]
11:15 AM Ticket #16697 (No Contacts output) created by schell.a@…
[…] Screenshot 2025-01-24 223149.png
4:05 AM Ticket #16696 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]

Jan 25, 2025:

8:49 PM Ticket #16695 (delete all: OSError: exception: access violation) created by chimerax-bug-report@…
[…]
8:49 PM Ticket #16694 (delete all: OSError: exception: access violation) created by chimerax-bug-report@…
[…]
8:48 PM Ticket #16693 (delete all: OSError: exception: access violation) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #16692 (Crash closing main window(?)) created by chimerax-bug-report@…
[…]

Jan 24, 2025:

7:35 PM Ticket #16691 (Crash moving window between screens(?)) created by chimerax-bug-report@…
[…]
4:19 PM Ticket #16690 (Should ChimeraX structure prediction focus on Boltz-1, Chai-1, ...) created by Tom Goddard
There is a lot of competition making AlphaFold 3 clones. Boltz-1 from …
3:33 PM Ticket #16662 (xr true: A supplied object handle was invalid) closed by Tom Goddard
fixed: Fixed. If OpenXR connection is closed in now gives an clear error …
3:29 PM Ticket #16689 (Closing SteamVR app: xr.exception.HandleInvalidError) closed by Tom Goddard
fixed: Fixed. Added code to detect when OpenXR connection is lost and give …
12:20 PM Ticket #16689 (Closing SteamVR app: xr.exception.HandleInvalidError) created by goddard@…
[…]
12:02 PM Ticket #16686 (Matrix is None) closed by Tom Goddard
duplicate: This was fixed a month ago in the daily builds right after the …
11:55 AM Ticket #16685 (Multiple movies conflict with each other) closed by Tom Goddard
fixed: Fixed. The ChimeraX movie recording command saves the movie images in …
11:26 AM Ticket #16683 (QObject::killTimer: Timers cannot be stopped from another thread) closed by Tom Goddard
limitation: The error messages indicate a PyQt object was deleted in a non-gui …
11:12 AM Ticket #16688 (QScore: model is None) created by rohou.alexis@…
[…]
10:50 AM Ticket #16687 (Crash in event loop) closed by pett
can't reproduce
10:21 AM Ticket #16687 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:13 AM Ticket #16686 (Matrix is None) created by ymazor@…
[…]
6:47 AM Ticket #16685 (Multiple movies conflict with each other) created by miro.astore@…
[…]
1:30 AM Ticket #16684 (Crash in create_profile) created by chimerax-bug-report@…
[…]

Jan 23, 2025:

9:09 PM Ticket #16683 (QObject::killTimer: Timers cannot be stopped from another thread) created by chimerax-bug-report@…
[…]
7:52 PM Ticket #16682 (Volume raycasting with orthoplanes: Shader compile failure) created by chimerax-bug-report@…
[…]
5:22 PM Ticket #8997 (Skewed DICOM planes skew DICOM 2x2 view too) closed by Zach Pearson
fixed: There's no reason that comes to mind to pay heed to the rotations of …
5:00 PM Ticket #16499 (open 3MWP: URL can't contain control characters. 'ssh -D') closed by Greg Couch
duplicate
4:53 PM 2025-1-23 edited by Tom Goddard
(diff)
4:30 PM Ticket #16675 (Bug Reporter: crash in opengl_info) closed by Tom Goddard
nonchimerax: User's OpenGL graphics was not functioning for Qt or ChimeraX and gave …
4:20 PM Ticket #16681 ("Color outside volume" option on Surface Color panel does nothing) closed by Tom Goddard
fixed: Fixed. The "Color outside volume" option of the Surface Color panel …
4:16 PM Ticket #16681 ("Color outside volume" option on Surface Color panel does nothing) created by hansenbry@…
Begin forwarded message: From: "Hansen, Bryan (NIH/NIAID) [E] via …
2:50 PM Ticket #15701 (Bounding box breaks regions of interest when raycasting) closed by Zach Pearson
fixed: Same resolution as #15707.
2:49 PM Ticket #15707 (Turning on raycasting with an open segmentation results in ...) closed by Zach Pearson
fixed: It turns out that in the VolumeRaycastDrawing's draw method, the …
2:11 PM Ticket #16680 (Crash opening mmCIF) closed by pett
can't reproduce
1:58 PM Ticket #16679 (Crash opening mmCIF) closed by pett
can't reproduce: Opening the standard 7usx entry on my Mac does not crash
1:53 PM Ticket #16678 (Crash opening mmCIF) closed by pett
can't reproduce
1:52 PM Ticket #16677 (Crash getting display_radii) closed by pett
can't reproduce
1:49 PM Ticket #16676 (Crash getting display_radii) closed by pett
can't reproduce
1:25 PM Ticket #16680 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
1:17 PM Ticket #16679 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
1:15 PM Ticket #16678 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
1:10 PM Ticket #16677 (Crash getting display_radii) created by chimerax-bug-report@…
[…]
1:09 PM Ticket #16676 (Crash getting display_radii) created by chimerax-bug-report@…
[…]
12:51 PM Ticket #16675 (Bug Reporter: crash in opengl_info) created by vipul.kumar2@…
[…]
10:58 AM R24-slides edited by pett
(diff)
10:56 AM 2025-1-23 edited by Tom Goddard
(diff)
10:55 AM 2025-1-23 edited by Tom Goddard
(diff)
10:54 AM 2025-1-23 edited by Tom Goddard
(diff)
10:53 AM R24-slides edited by pett
(diff)
10:53 AM R24-slides edited by pett
(diff)
10:52 AM R24-slides edited by pett
(diff)
10:47 AM R24-slides created by pett
10:45 AM Features edited by pett
(diff)
10:45 AM Features edited by pett
(diff)
10:37 AM Ticket #16674 (Crash getting secondary structure ID) closed by pett
can't reproduce
10:29 AM Ticket #16673 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by pett
duplicate
10:27 AM Ticket #16672 (Crash on Mac waking from sleep) closed by pett
duplicate
10:25 AM Ticket #16671 (Crash on Windows using file dialog in qtpy) closed by pett
can't reproduce
8:34 AM Ticket #16674 (Crash getting secondary structure ID) created by chimerax-bug-report@…
[…]
5:58 AM Ticket #16673 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by chimerax-bug-report@…
[…]
12:06 AM Ticket #16672 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 22, 2025:

6:42 PM 2025-1-23 edited by Tom Goddard
(diff)
2:15 PM GroupMeetings2024 edited by Tom Goddard
(diff)
1:15 PM Ticket #16483 (Can't save session with Profile Grid) closed by pett
fixed: Profile Grid saves in sessions now (tomorrow's daily build).
1:12 PM Ticket #16670 (Crash in event handling during AlphaFold prediction) closed by Tom Goddard
can't reproduce: Maybe the code crashed handling Toolshed update results. It crashed …
1:09 PM Ticket #16669 (Graphics crash, macOS 15.1.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
1:07 PM Ticket #16667 (Crash moving window between screens) closed by Tom Goddard
duplicate
11:10 AM Ticket #16668 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) closed by pett
fixed: Fix: …
10:27 AM Ticket #16671 (Crash on Windows using file dialog in qtpy) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #16666 (Crash in event loop) closed by pett
can't reproduce: Possible remote display
7:58 AM Ticket #16670 (Crash in event handling during AlphaFold prediction) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #16669 (Graphics crash, macOS 15.1.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
5:31 AM Ticket #16668 (Dock Prep: wrapped C/C++ object of type ShortASList has been deleted) created by chimerax-bug-report@…
[…]
1:06 AM Ticket #16667 (Crash moving window between screens) created by chimerax-bug-report@…
[…]

Jan 21, 2025:

7:05 PM Ticket #16649 (Scalebar: "could not convert string to float" for various values) closed by Tom Goddard
fixed: Fixed. User typed in bad number format in length, x, y, or thickness …
6:30 PM Ticket #16666 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:26 PM Ticket #16664 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: ChimeraX 1.9 may encounter this crash less often. It is a bug in the …
1:24 PM Ticket #16663 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: There is a message about this ChimeraX crash in the ChimeraX Report a …
11:52 AM Ticket #16665 (SEQCROW: 'Session' object has no attribute 'log') created by chimerax-bug-report@…
[…]
11:40 AM 2025-1-23 created by Tom Goddard
11:36 AM 2025-1-16 edited by Tom Goddard
(diff)
11:36 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:16 AM Ticket #16659 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate
11:15 AM Ticket #16656 (glTexImage2D: out of memory while drawing silhouettes /selection outline) closed by Tom Goddard
can't reproduce: Mesa 24.3.0 ran out of memory allocating about 15 Kbytes for a …
11:07 AM Ticket #16646 (Crash in swap_buffers) closed by Tom Goddard
nonchimerax: This ChimeraX crash happened in the graphics driver. ChimeraX …
11:01 AM Ticket #16645 (Crash in swap_buffers) closed by Tom Goddard
can't reproduce: Crash in OpenGL swap_buffers. Probable graphics driver error. User …
10:37 AM Ticket #16664 (Crash on Mac waking from sleep) created by alex.long@…
[…]
10:16 AM Ticket #16663 (Crash on Mac waking from sleep) created by hannesludewig@…
[…]
9:36 AM Ticket #16661 (Crash in ~QAccessibleCache on exit) closed by pett
can't reproduce
9:27 AM Ticket #16655 (Crash in combine_sym_atoms) closed by pett
can't reproduce
9:26 AM Ticket #4777 (Crash in combine_sym_atoms) closed by pett
can't reproduce
9:26 AM Ticket #16662 (xr true: A supplied object handle was invalid) created by chimerax-bug-report@…
[…]
9:25 AM Ticket #16653 (Session restore: ItemTable's selectionModel() is None) closed by pett
duplicate: Duplicate of #16654
9:19 AM Ticket #16652 (Crash moving window between screens) closed by pett
duplicate
8:55 AM Ticket #16648 (Crash in event loop) closed by pett
can't reproduce
8:53 AM Ticket #16647 (AlphaFold Error Plot: list index out of range) closed by pett
duplicate: Duplicate of #16429
8:31 AM Ticket #16642 (Find Cavities crash) closed by pett
duplicate
6:38 AM Ticket #16661 (Crash in ~QAccessibleCache on exit) created by chimerax-bug-report@…
[…]
6:04 AM Ticket #16660 (toolshed install: Non-existent wheel file) created by chimerax-bug-report@…
[…]

Jan 20, 2025:

9:14 PM Ticket #16659 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
6:14 PM Ticket #16658 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
5:16 PM Ticket #16657 ('MRCGrid' object has no attribute 'dicom_data') created by skaruppan@…
[…]
12:51 PM Ticket #16656 (glTexImage2D: out of memory while drawing silhouettes /selection outline) created by chimerax-bug-report@…
[…]
8:21 AM Ticket #16655 (Crash in combine_sym_atoms) created by chimerax-bug-report@…
[…]
7:04 AM Ticket #16654 (Session restore: ItemTable's selectionModel() is None (Parsing ...) created by zhangxy14@…
[…]
6:48 AM Ticket #16653 (Session restore: ItemTable's selectionModel() is None) created by chimerax-bug-report@…
[…]
6:10 AM Ticket #16652 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
5:49 AM Ticket #16651 (Crash using open/save dialog) created by zx2020@…
[…]
5:47 AM Ticket #16650 (Crash using open/save dialog) created by zx2020@…
[…]

Jan 19, 2025:

6:53 PM Ticket #16649 (Scalebar: "could not convert string to float" for various values) created by chimerax-bug-report@…
[…]
5:04 PM Ticket #16648 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:30 PM Ticket #16647 (AlphaFold Error Plot: list index out of range) created by chimerax-bug-report@…
[…]
2:59 AM Ticket #16646 (Crash in swap_buffers) created by saverio.lemme@…
[…]
2:56 AM Ticket #16645 (Crash in swap_buffers) created by chimerax-bug-report@…
[…]

Jan 18, 2025:

9:29 AM Ticket #16644 (~/Library/Application Support/ChimeraX not a directory) created by chimerax-bug-report@…
[…]

Jan 17, 2025:

9:17 PM Ticket #16643 (delayed command registration for 'isolde' failed: OpenMM library not loaded) created by e.orlova@…
[…]
12:21 PM Ticket #16642 (Find Cavities crash) created by chimerax-bug-report@…
[…]
11:15 AM Ticket #16638 (Crash on exit [NSTouch dealloc]) closed by Tom Goddard
duplicate: This crash when quitting ChimeraX happens only in daily builds from …
9:39 AM Ticket #16641 (Find Cavities crash) closed by pett
duplicate: Duplicate of #16461
9:35 AM Ticket #16640 (KeyError in tool instance → window map) closed by pett
can't reproduce: Why was this user opening the same UniProt identifier so many times?
9:29 AM Ticket #16639 (Color key: cannot restore numeric locale) closed by pett
duplicate: Duplicate of #10105
8:16 AM Ticket #16641 (Find Cavities crash) created by chimerax-bug-report@…
[…]
3:26 AM Ticket #16640 (KeyError in tool instance → window map) created by chimerax-bug-report@…
[…]
2:00 AM Ticket #16639 (Color key: cannot restore numeric locale) created by chimerax-bug-report@…
[…]

Jan 16, 2025:

9:23 PM Ticket #16638 (Crash on exit [NSTouch dealloc]) created by tavaresa@…
[…]
5:07 PM Ticket #16633 (Runtime error installing CollabFold) closed by Tom Goddard
fixed: Fixed. Does not require updating ChimeraX. Google Colab script was …
4:56 PM Ticket #16334 (DICOM: index is out of bounds) closed by Zach Pearson
duplicate: Use the daily build
4:12 PM Ticket #16637 (Session restore: HDF5: file signature not found) closed by Tom Goddard
can't reproduce: Online posts say this HDF "file signature not found" error means …
3:57 PM Ticket #16634 (Graphics crash, macOS 14.3, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
3:56 PM Ticket #16636 (Find Cavities crash) closed by pett
duplicate: Duplicate of #16461
3:53 PM Ticket #16635 (Crash in chem_group) closed by pett
can't reproduce
3:52 PM Ticket #16630 (Graphics crash, macOS 14.7.2, NVIDIA GeForce GT 640M) closed by Tom Goddard
nonchimerax: The traceback shows no calls to the graphics driver in progress, but …
3:48 PM Ticket #16629 (FoldSeek: Permission denied writing temp file) closed by Tom Goddard
duplicate: This is fixed in the current ChimeraX daily build. Unfortunately …
3:39 PM Ticket #16632 (All hydrogen names for ATP N6) closed by pett
not a bug: In the user's structure, ATP N6 must be being typed as something other …
3:26 PM Ticket #16631 (Safesave: file missing) closed by pett
fixed: Now also embed process start time.
2:32 PM Ticket #16628 (Duplicate bond in SDF file) closed by pett
fixed
2:05 PM NIAID2024 edited by Elaine Meng
(diff)
1:47 PM NIAID2024 edited by Elaine Meng
(diff)
11:58 AM Ticket #16572 (Bug when QTWebengine is not built ChimeraX 1.6.1 and 1.7) closed by Greg Couch
limitation
10:07 AM Ticket #16637 (Session restore: HDF5: file signature not found) created by chimerax-bug-report@…
[…]
9:36 AM Ticket #16636 (Find Cavities crash) created by chimerax-bug-report@…
[…]
8:22 AM Ticket #16635 (Crash in chem_group) created by chimerax-bug-report@…
[…]
7:54 AM Ticket #16634 (Graphics crash, macOS 14.3, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
7:01 AM Ticket #16633 (Runtime error installing CollabFold) created by tavaresa@…
[…] Screenshot 2025-01-16 at 9.49.53 AM.png
6:32 AM Ticket #16632 (All hydrogen names for ATP N6) created by chimerax-bug-report@…
[…]
6:16 AM Ticket #16631 (Safesave: file missing) created by chimerax-bug-report@…
[…]
4:43 AM Ticket #16630 (Graphics crash, macOS 14.7.2, NVIDIA GeForce GT 640M) created by chimerax-bug-report@…
[…]
4:08 AM Ticket #16629 (FoldSeek: Permission denied writing temp file) created by james.lecornu@…
[…]

Jan 15, 2025:

10:16 PM Ticket #16610 (Session restore: AtomicShapeDrawing parent is None) closed by Greg Couch
limitation: Each shape in an AtomicShapeDrawing has it's own atoms associated with …
7:38 PM Ticket #16628 (Duplicate bond in SDF file) created by ytao.phd@…
[…] reh9-1.sdf
6:19 PM Ticket #16627 (ChimeraX with Qt 6.8 crashes at exit nearly every time on Mac) created by goddard@…
[…]
4:22 PM Ticket #16626 (glGetString: out of memory) closed by Tom Goddard
can't reproduce: Looks like your computer Intel graphics driver is broken. It gives …
4:14 PM Ticket #16625 (glGenVertexArrays: out of memory) closed by Tom Goddard
nonchimerax: Bad graphics driver. Every opengl call gives "out of memory" at startup.
2:48 PM Ticket #16626 (glGetString: out of memory) created by cybelen@…
[…]
2:47 PM Ticket #16625 (glGenVertexArrays: out of memory) created by chimerax-bug-report@…
[…]
12:05 PM Ticket #16505 (error in running kvfinder) closed by pett
fixed: That's great to hear! Thanks for checking it out. --Eric
12:03 PM Ticket #16624 (Foldseeks mishandles Content-Length header) closed by Tom Goddard
fixed: Fixed. Added conversion of string to integer when reporting the size …
11:56 AM Ticket #16624 (Foldseeks mishandles Content-Length header) created by Lukas.Bauer@…
[…]
11:51 AM Ticket #16623 (MemoryError opening mmCIF file) closed by pett
duplicate
11:48 AM Ticket #16622 (Cannot save to public desktop) closed by pett
duplicate
11:47 AM Ticket #16621 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:35 AM Ticket #16619 (Crash in garbage collection) closed by pett
duplicate
11:18 AM Ticket #16623 (MemoryError opening mmCIF file) created by chimerax-bug-report@…
[…]
8:29 AM Ticket #16622 (Cannot save to public desktop) created by chimerax-bug-report@…
[…]
7:24 AM Ticket #16621 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
7:12 AM Ticket #16620 (Installing SEQCROW nukes multiple unrelated commands) created by Tristan Croll
[…]
12:00 AM Ticket #16619 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Jan 14, 2025:

3:35 PM Ticket #16582 (Problem with rotation and labels) closed by Tom Goddard
fixed: Fixed. The 3d labels reorient to face the camera when the scene is …
11:13 AM Dev2025-1-20 created by Tom Goddard
11:12 AM 2025-1-16 created by Tom Goddard
11:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:03 AM Ticket #16616 (Crash in draw_elements) closed by Tom Goddard
nonchimerax: Crashed in GL.glDrawElementsInstanced(element_type, ne, …
10:31 AM Ticket #16611 (Crash in readcif::CIFFile::parse_row) closed by Greg Couch
can't reproduce: Tom, can you get me some AlphaFold 3 mmCIF output? I want to run it …
10:19 AM Ticket #16618 (Crash on Mac waking from sleep) closed by pett
duplicate
10:18 AM Ticket #16617 (Crash on Mac waking from sleep) closed by pett
duplicate
10:14 AM Ticket #16615 (Mutate to ALA) closed by pett
not a bug: Hi Su Datt, There are no rotamers for alanine obviously, so you …
10:09 AM Ticket #16614 (Crash on Mac waking from sleep) closed by pett
duplicate
10:05 AM Ticket #16612 (Crash using open/save dialog or drawing background) closed by pett
can't reproduce
9:52 AM Ticket #16618 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:25 AM Ticket #16617 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
5:09 AM Ticket #16616 (Crash in draw_elements) created by mai.nguyen@…
[…]
1:58 AM Ticket #16615 (Mutate to ALA) created by sudatt.lam@…
[…]
1:39 AM Ticket #16614 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #16613 (ISOLDE: "running error 250114") created by seyoen0895@…
[…]

Jan 13, 2025:

11:18 PM Ticket #16612 (Crash using open/save dialog or drawing background) created by chimerax-bug-report@…
[…]
9:43 PM Ticket #16611 (Crash in readcif::CIFFile::parse_row) created by chimerax-bug-report@…
[…]
5:35 PM Dev2025-1-13 edited by Tom Goddard
(diff)
4:02 PM Ticket #16610 (Session restore: AtomicShapeDrawing parent is None) created by pett
[…] aniso.cxs
11:32 AM Ticket #16607 (Crash moving window between screens(?)) closed by Tom Goddard
duplicate
11:25 AM Ticket #16605 (Crash drawing status bar) closed by Tom Goddard
can't reproduce: Crashed in swap_buffers(). Only idea I have is that it was in the …
9:43 AM Ticket #16609 (Crash in event loop at startup) closed by pett
can't reproduce
9:41 AM Ticket #16608 (Crash on Mac waking from sleep) closed by pett
duplicate
9:39 AM Ticket #16606 (Problem destroying in-window status bar: wrapped C/C++ object of type ...) closed by pett
can't reproduce: ChimeraX 1.2.5, so likely no longer relevant
9:33 AM Ticket #16604 (Crash drawing status bar) closed by pett
can't reproduce
8:57 AM Ticket #16609 (Crash in event loop at startup) created by chimerax-bug-report@…
[…]
7:25 AM Ticket #16608 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 12, 2025:

5:42 PM Ticket #16607 (Crash moving window between screens(?)) created by chimerax-bug-report@…
[…]
3:36 AM Ticket #16606 (Problem destroying in-window status bar: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]

Jan 10, 2025:

10:58 PM Ticket #16605 (Crash drawing status bar) created by chimerax-bug-report@…
[…]
9:05 PM Ticket #16604 (Crash drawing status bar) created by chimerax-bug-report@…
[…]
6:27 PM Ticket #16603 (ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
5:42 PM Ticket #16600 (ChimeraX fails to start on Rocky 9) closed by Greg Couch
fixed: The workaround to force XWayland, appears to not be needed anymore. …
4:56 PM Ticket #16601 (Save session: GLTF cycle detected) closed by Tom Goddard
duplicate: Fixed 1.5 years ago, ticket #9594
4:48 PM Ticket #16597 (volume zone: ArrayMemoryError) closed by Tom Goddard
can't reproduce: Unclear how they ran out of memory allocating 76 Mbytes when less than …
4:42 PM Ticket #16592 (FoldSeek temp file on Windows) closed by Tom Goddard
fixed: Fixed. Thanks for diagnosing this. I saw this error reported before …
3:49 PM Ticket #16591 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This crash is caused by a bug in the Qt window toolkit used by …
3:45 PM Ticket #16590 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: User got the "This is a known crash..." error message but decided to …
3:42 PM Ticket #16586 (Failed to create vertex shader) closed by Tom Goddard
nonchimerax: Qt warns it has graphics problems at startup, then our graphics code …
8:52 AM Ticket #16602 (Crash in Open File dialog on Windows) closed by pett
can't reproduce: Still dicey whether faulthandler is a net positive in these bug reports.
8:39 AM Ticket #16599 (Crash in python_instances_of_class) closed by pett
duplicate
8:38 AM Ticket #16598 (Crash in event loop) closed by pett
can't reproduce
8:27 AM Ticket #16596 (Crash in garbage collection) closed by pett
duplicate
8:25 AM Ticket #16595 (Crash in garbage collection) closed by pett
duplicate
8:25 AM Ticket #16594 (Crash in garbage collection) closed by pett
duplicate
8:24 AM Ticket #16593 (Crash on Mac waking from sleep) closed by pett
duplicate
8:16 AM Ticket #16589 (Crash in garbage collection) closed by pett
duplicate
8:15 AM Ticket #16588 (Crash in chem_group.find_group) closed by pett
can't reproduce: I would need the structure file to have any hope of tracking this down.
7:27 AM Ticket #16602 (Crash in Open File dialog on Windows) created by chimerax-bug-report@…
[…]
5:49 AM Ticket #16580 (Memory leak) reopened by Tristan Croll
Huh... as luck would have it, I happened to be doing something else …
12:55 AM Ticket #16601 (Save session: GLTF cycle detected) created by chimerax-bug-report@…
[…]
12:07 AM Ticket #16600 (ChimeraX fails to start on Rocky 9) created by Greg Couch
On a fresh, fully updated, Rocky 9 VM with ChimeraX 1.9 installed, it …

Jan 9, 2025:

9:44 PM Ticket #16549 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) closed by Greg Couch
limitation: It is unclear how ChimeraX was installed. There is no tarball for …
5:35 PM Ticket #16599 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
5:01 PM Ticket #16598 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:23 PM Ticket #16565 (Crash reading .cif file) closed by Greg Couch
can't reproduce: Need a test case.
4:10 PM Ticket #16597 (volume zone: ArrayMemoryError) created by chimerax-bug-report@…
[…]
3:13 PM 2025-1-9 edited by Tom Goddard
(diff)
2:10 PM Ticket #16366 (segmentations mouse mode: list index out of range) closed by Zach Pearson
fixed: This should be fixed in the 1.9 release or the daily builds. Sorry for …
1:02 PM Ticket #16596 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
12:46 PM Ticket #16595 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
11:28 AM Ticket #16594 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #16593 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
8:37 AM Ticket #16592 (FoldSeek temp file on Windows) created by Tristan Croll
[…]
8:30 AM Ticket #16591 (Crash on Mac waking from sleep) created by martik39@…
[…]
5:47 AM Ticket #16590 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
3:51 AM Ticket #16589 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:41 AM Ticket #16580 (Memory leak) closed by Tristan Croll
can't reproduce: Ugh. Never mind. Turns out that (a) tracemalloc itself uses oodles …
1:54 AM Ticket #16588 (Crash in chem_group.find_group) created by chimerax-bug-report@…
[…]
12:55 AM Ticket #16587 (Hang while fetching UniProt) created by yapyuen03@…
[…]
12:23 AM Ticket #16586 (Failed to create vertex shader) created by chimerax-bug-report@…
[…]

Jan 8, 2025:

6:01 PM Ticket #16585 (Volume Viewer after session restore: wrapped C/C++ object of type ...) closed by pett
duplicate: Duplicate of #7103
6:00 PM Ticket #16584 (Volume Viewer after session restore: wrapped C/C++ object of type ...) closed by pett
duplicate: Duplicate of #7103
3:45 PM Ticket #16583 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
3:09 PM Ticket #16578 (volume splitbyzone: ArrayMemoryError) closed by Tom Goddard
limitation: Ran out of memory in volume splitbyzone on a modest size map 64 Mbytes …
3:05 PM Ticket #16576 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) closed by Tom Goddard
nonchimerax: Crash in Apple AMD graphics driver. Same reporter, same crash …
3:03 PM Ticket #16573 (glDrawBuffer: invalid operation drawing silhouettes) closed by Tom Goddard
can't reproduce: Have seen this reported before on Linux. OpenGL framebuffer seems to …
3:01 PM Ticket #16566 (glTexImage2D: out of memory while drawing silhouettes) closed by Tom Goddard
can't reproduce: Out of memory creating a texture for silhouette edge calculation. …
2:57 PM Ticket #16585 (Volume Viewer after session restore: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
2:57 PM Ticket #16584 (Volume Viewer after session restore: wrapped C/C++ object of type ...) created by chimerax-bug-report@…
[…]
11:03 AM Ticket #16583 (Graphics crash, macOS 14.6.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
10:54 AM Ticket #16571 (Python shell warning -- pickleshare not installed) closed by pett
fixed: Added the pickleshare module to the app requirements
9:45 AM Ticket #16579 (Crash opening PDB file) closed by pett
can't reproduce
9:42 AM Ticket #16577 (Crash in python_instances_of_class) closed by pett
duplicate
9:27 AM Ticket #16570 (Crash opening mmCIF) closed by pett
can't reproduce: I assume you would need the input file in order to reproduce this.
7:32 AM Ticket #16582 (Problem with rotation and labels) created by jeroen.vanweperen@…
[…]
4:20 AM Ticket #16581 (ui view fourup: OpenGL texture was not deleted before graphics.Texture ...) created by chimerax-bug-report@…
[…]
3:49 AM Ticket #16580 (Memory leak) created by Tristan Croll
[…]
3:20 AM Ticket #16579 (Crash opening PDB file) created by chimerax-bug-report@…
[…]

Jan 7, 2025:

9:59 PM Ticket #16578 (volume splitbyzone: ArrayMemoryError) created by chimerax-bug-report@…
[…]
9:01 PM Ticket #16577 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
5:28 PM Dev2025-1-13 created by Tom Goddard
5:27 PM DeveloperMeetings edited by Tom Goddard
(diff)
5:26 PM 2025-1-9 edited by Tom Goddard
(diff)
1:18 PM Ticket #16576 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) created by chimerax-bug-report@…
[…]
11:44 AM Ticket #16575 (Orthoplanes: 'MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…
[…]
10:47 AM Ticket #16574 (ORCA/TDDFT output: could not convert string to float) created by william.robinson223@…
[…]
10:23 AM Ticket #16573 (glDrawBuffer: invalid operation drawing silhouettes) created by chimerax-bug-report@…
[…]
4:23 AM Ticket #16572 (Bug when QTWebengine is not built ChimeraX 1.6.1 and 1.7) created by karho@…
[…]
1:47 AM Ticket #16571 (Python shell warning -- pickleshare not installed) created by Tristan Croll
[…]
12:11 AM Ticket #16570 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]

Jan 6, 2025:

4:36 PM Ticket #16569 (Presets / Initial Styles / Original Look does not change tube helices ...) created by goddard@…
[…]
3:48 PM Dev2025-1-6 edited by Tom Goddard
(diff)
3:48 PM Dev2025-1-6 edited by Tom Goddard
(diff)
1:44 PM Ticket #16568 (matchmaker with altlocs shown: No matrix compatible with both ...) created by goddard@…
[…]
1:41 PM Ticket #16567 (Option to omit labels for short missing-loop segments) created by olibclarke@…
One related suggestion here - there is an option to "label missing …
1:20 PM Ticket #16566 (glTexImage2D: out of memory while drawing silhouettes) created by chimerax-bug-report@…
[…]
12:08 PM Ticket #16565 (Crash reading .cif file) created by chimerax-bug-report@…
[…]
11:56 AM Ticket #16564 (volume flip: 'NoneType' object is not subscriptable) closed by Tom Goddard
duplicate: I believe this is fixed in ChimeraX version 1.9. The code had a bug …
11:39 AM Ticket #16563 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) closed by Tom Goddard
nonchimerax: Apple AMD graphics driver crash. Same reporter, same crash as #16560
11:37 AM Ticket #16562 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) closed by Tom Goddard
nonchimerax: Apple AMD graphics driver crash. Same reporter, same crash as #16560
11:36 AM Ticket #16561 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) closed by Tom Goddard
nonchimerax: Apple AMD graphics driver crash. Same reporter, same crash as #16560
11:35 AM Ticket #16560 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) closed by Tom Goddard
nonchimerax: Apple AMD graphics driver crash.
10:51 AM Ticket #16556 ("Demoted" StructureSeq does not save/restore correctly) closed by pett
duplicate: Duplicate of #15396
10:47 AM Ticket #16564 (volume flip: 'NoneType' object is not subscriptable) created by um18fa@…
[…]
10:46 AM Ticket #16555 (Crash on Mac waking from sleep) closed by pett
duplicate
10:43 AM Ticket #16554 (Crash on Mac waking from sleep) closed by pett
duplicate
10:35 AM Ticket #16553 (Crash on Mac waking from sleep) closed by pett
duplicate
9:24 AM Ticket #16563 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) created by chimerax-bug-report@…
[…]
8:29 AM Ticket #16562 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) created by chimerax-bug-report@…
[…]
8:28 AM Ticket #16561 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) created by chimerax-bug-report@…
[…]
8:26 AM Ticket #16560 (Graphics crash, macOS 15.2, Radeon Pro Vega 56) created by chimerax-bug-report@…
[…]
6:28 AM Ticket #16559 (SEQCROW: could not convert string to float: 'TITLE') created by 2529108683@…
[…] 曲线校正-solid-L-Ala-KBr-0.15-5000-1.csv
1:10 AM Ticket #16558 (Cannot 'pip install pyKVFinger') created by chimerax-bug-report@…
[…]
12:56 AM Ticket #16557 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
12:27 AM Ticket #16556 ("Demoted" StructureSeq does not save/restore correctly) created by chimerax-bug-report@…
[…]
12:02 AM Ticket #16555 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 4, 2025:

10:20 AM Ticket #16554 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]

Jan 3, 2025:

5:03 PM Ticket #9732 (Option to always show model number in label) closed by pett
fixed: Available in next daily build as the "Always show structure model …
3:05 PM Ticket #16553 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
1:58 PM Ticket #16546 (Silhouette outlines incorrect in saved image) closed by Tom Goddard
nonchimerax: Unfortunately this is a bug in Apple's Intel graphics driver on a …
1:44 PM Ticket #16536 (Render By Attribute: switching attributes does not preserve marker radius) closed by pett
fixed: Tool is not saved in session, so that part is moot.
9:48 AM Ticket #16552 (Crash on Mac waking from sleep) closed by pett
duplicate
9:44 AM Ticket #16551 (Find Cavities crash) closed by pett
duplicate: Hi Fenwick, Thanks for reporting this problem. We are aware of this …
9:35 AM Ticket #16550 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) closed by pett
duplicate
9:31 AM Ticket #16548 (Crash in python_instances_of_class) closed by pett
duplicate
5:05 AM Ticket #16552 (Crash on Mac waking from sleep) created by chimerax-bug-report@…
[…]
2:39 AM Ticket #16545 (Problem reading MTZ file) closed by Tristan Croll
not a bug: Glad to hear it's working! No, I don't think it's the spaces - at …

Jan 2, 2025:

10:57 PM Ticket #16551 (Find Cavities crash) created by fenwickantonyer@…
[…] best_model.pdb
10:45 PM Ticket #16550 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by chimerax-bug-report@…
[…]
10:45 PM Ticket #16549 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by chimerax-bug-report@…
[…]
6:51 PM Ticket #16548 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
2:14 PM Ticket #16547 (Save X3D failure saving 2D labels) created by ubaumann@…
[…]
1:34 PM Ticket #16546 (Silhouette outlines incorrect in saved image) created by hyunmin.kim@…
[…] model1-full.png
12:06 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:06 PM DeveloperMeetings2024 created by Tom Goddard
12:05 PM 2025-1-9 created by Tom Goddard
12:04 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:03 PM Dev2025-1-6 created by Tom Goddard
12:02 PM GroupMeetings2024 edited by Tom Goddard
(diff)
12:01 PM GroupMeetings2024 created by Tom Goddard
12:01 PM DeveloperMeetings edited by Tom Goddard
(diff)
11:55 AM Ticket #16543 (AlphaFold prediction is very slow) closed by Tom Goddard
can't reproduce: I ran your sequences using ChimeraX alphafold 2 prediction and it took …
11:38 AM Ticket #16544 (Infinite event-handling loop) closed by pett
can't reproduce
11:29 AM Ticket #16542 (Crash on Mac waking from sleep) closed by pett
duplicate
1:32 AM Ticket #16545 (Problem reading MTZ file) created by rd716@…
[…] [[Image(...)]]

Jan 1, 2025:

9:12 AM Ticket #16544 (Infinite event-handling loop) created by chimerax-bug-report@…
[…]
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