"Demoted" StructureSeq does not save/restore correctly

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/chimera/equip+active site
> 6pzk(109-140)(591-777)(1156-1260）and 8odo(1-57)(118-412)(415-487).cxs"

Log from Mon Jan 6 16:01:17 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "D:\林铭珍\研究生\课题\RSV\实验材料\RNA连接酶\chimera\equip
> 6pzk(109-140)(591-777)(1156-1260）and 8odo(1-57)(118-412)(415-487).cxs"
> format session

Log from Wed Dec 4 14:20:32 2024UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open "D:\林铭珍\研究生\课题\RSV\实验材料\RNA连接酶\chimera\6pzk and 8odo.cxs" format
> session

Log from Mon Dec 2 14:31:45 2024 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 6pzk fromDatabase pdb format mmcif

6pzk title:  
Cryo-EM Structure of the Respiratory Syncytial Virus Polymerase (L) Protein
Bound by the Tetrameric Phosphoprotein (P) [more info...]  
  
Chain information for 6pzk #1  
---  
Chain | Description | UniProt  
A | RNA-directed RNA polymerase L | L_HRSVA 1-2165  
B C D E | Phosphoprotein | PHOSP_HRSVA 1-241  
  

> select /B/C/D/E

2047 atoms, 2050 bonds, 1 pseudobond, 263 residues, 2 models selected  

> select add /A

13153 atoms, 13390 bonds, 4 pseudobonds, 1624 residues, 2 models selected  

> style sel stick

Changed 13153 atom styles  

> show sel cartoons

> hide sel atoms

> select clear

> select add /A

11106 atoms, 11340 bonds, 3 pseudobonds, 1361 residues, 2 models selected  

> color (#!1 & sel) cornflower blue

> select clear

> save D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/chimera/6pzk.cxs

> open D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/PDB文件/RNA连接酶PDB文件/8odo.pdb

8odo.pdb title:  
Structure of human guanylylated RTCB In complex with archease [more info...]  
  
Chain information for 8odo.pdb #2  
---  
Chain | Description | UniProt  
A C E G | 3'-phosphate/5'-hydroxy nucleic ACID ligase | RTCB_HUMAN 1-505  
B D F H | protein archease | A8K0B5_HUMAN 1-179  
  
Non-standard residues in 8odo.pdb #2  
---  
5GP — guanosine-5'-monophosphate  
MN — manganese (II) ion  
PO4 — phosphate ion  
  

> select add #2/A#2/C#2/E#2/G

15946 atoms, 15828 bonds, 20 pseudobonds, 2434 residues, 2 models selected  

> select add #2/B#2/D#2/F#2/H

21728 atoms, 21506 bonds, 39 pseudobonds, 3346 residues, 2 models selected  

> style sel stick

Changed 21728 atom styles  

> show sel cartoons

> hide sel atoms

> color (#!2 & sel) orange

> select clear

> ui tool show Matchmaker

> matchmaker #!2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 6pzk, chain D (#1) with 8odo.pdb, chain C (#2), sequence alignment
score = 52  
RMSD between 23 pruned atom pairs is 0.513 angstroms; (across all 55 pairs:
22.064)  
  

> select #1/B:149

8 atoms, 7 bonds, 1 residue, 1 model selected  

> view sel

> undo

> select clear

[Repeated 2 time(s)]

> preset "overall look" interactive

Using preset: Overall Look / Interactive  
Preset expands to these ChimeraX commands:

    
    
    ~set bg
    graphics silhouettes f
    lighting depthCue t

  

> select add #2/A#2/C#2/E#2/G

15946 atoms, 15828 bonds, 20 pseudobonds, 2434 residues, 2 models selected  

> select add #1/B#1/C#1/D#1/E

17993 atoms, 17878 bonds, 21 pseudobonds, 2697 residues, 4 models selected  

> select add #1/A

29099 atoms, 29218 bonds, 24 pseudobonds, 4058 residues, 4 models selected  

> select add #2/B#2/D#2/F#2/H

34881 atoms, 34896 bonds, 43 pseudobonds, 4970 residues, 4 models selected  

> view sel

> select clear

> select add #2/G

3943 atoms, 3957 bonds, 5 pseudobonds, 565 residues, 2 models selected  

> select clear

> save "D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/chimera/6pzk and 8odo.cxs"

——— End of log from Mon Dec 2 14:31:45 2024 ———

opened ChimeraX session  

> hide cartoons

> select #1/A:109-140

201 atoms, 201 bonds, 25 residues, 1 model selected  

> show sel cartoons

> select #1/A:591-777

1195 atoms, 1223 bonds, 2 pseudobonds, 148 residues, 2 models selected  

> show sel cartoons

> select #1/A:1156-1260

836 atoms, 844 bonds, 105 residues, 1 model selected  

> show sel cartoons

> select clear

> select #2/A:1-57

458 atoms, 466 bonds, 55 residues, 1 model selected  

> show sel cartoons

> select #2/A:118-412

2283 atoms, 2327 bonds, 295 residues, 1 model selected  

> show sel cartoons

> select #2/A:415-487

556 atoms, 562 bonds, 73 residues, 1 model selected  

> show sel cartoons

> select clear

> ui tool show Matchmaker

> matchmaker #!2 to #1/A pairing bs alg Smith-Waterman ssFraction 0.8948

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Smith-Waterman  
Similarity matrix | BLOSUM-62  
SS fraction | 0.8948  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 6pzk (#1) with 8odo.pdb (#2), sequence alignment score = 1070.39  
RMSD between 13 pruned atom pairs is 1.461 angstroms; (across all 371 pairs:
27.799)  
  

> ui tool show Matchmaker

> matchmaker #!2 to #1/A pairing bs ssFraction 0.8948

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.8948  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 6pzk, chain A (#1) with 8odo.pdb, chain A (#2), sequence alignment
score = 1056.25  
RMSD between 18 pruned atom pairs is 1.166 angstroms; (across all 399 pairs:
29.871)  
  
Drag select of 701 residues, 2 pseudobonds  

> view sel

> select clear

[Repeated 2 time(s)]

> select add #2/A#2/C#2/E#2/G

15946 atoms, 15828 bonds, 20 pseudobonds, 2434 residues, 2 models selected  

> select add #2/B#2/D#2/F#2/H

21728 atoms, 21506 bonds, 39 pseudobonds, 3346 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel light salmon

> color sel tomato

> color sel medium purple

> color sel pale violet red

> color sel cadet blue

> color sel medium sea green

> color sel sandy brown

> color sel chocolate

> color sel orange red

> color sel crimson

> color sel tomato

> color sel medium turquoise

> color sel plum

> color sel lavender

> color sel plum

> color sel light blue

> color sel pale violet red

> color sel light green

> color sel pale green

> color sel light coral

> color sel tan

> color sel silver

> color sel thistle

> color sel lavender

> color sel light salmon

> color sel dark salmon

> color sel orange

> color sel pale violet red

> color sel sky blue

> color sel thistle

> color sel medium aquamarine

> color sel dark sea green

> color sel thistle

> color sel plum

> color sel light salmon

> color sel salmon

> select clear

> select add #2/B#2/D#2/F#2/H

5782 atoms, 5678 bonds, 19 pseudobonds, 912 residues, 2 models selected  

> select add #2/A#2/C#2/E#2/G

21728 atoms, 21506 bonds, 39 pseudobonds, 3346 residues, 2 models selected  

> color (#!2 & sel) forest green

> ui tool show "Color Actions"

> color sel olive drab

> color sel dark khaki

> color sel yellow green

> color sel medium aquamarine

> color sel orange red

> color sel coral

> color sel gold

> color sel orange

> select clear

> select add ::name="LYS"

2430 atoms, 2184 bonds, 270 residues, 2 models selected  

> select clear

> save "D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/chimera/equip
> 6pzk(109-140)(591-777)(1156-1260）and 8odo(1-57)(118-412)(415-487).cxs"

——— End of log from Wed Dec 4 14:20:32 2024 ———

opened ChimeraX session  

> select #2/A:122

6 atoms, 5 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 6 atom styles  

> undo

> style sel ball

Changed 6 atom styles  

> select #2/A:227

10 atoms, 10 bonds, 1 residue, 1 model selected  
Drag select of 701 residues, 2 pseudobonds  

> view sel

> select clear

> select #2/A:122

6 atoms, 5 bonds, 1 residue, 1 model selected  

> style sel sphere

Changed 6 atom styles  

> color sel orange red

> style sel ball

Changed 6 atom styles  

> style sel sphere

Changed 6 atom styles  

> style sel stick

Changed 6 atom styles  

> show sel atoms

> show sel cartoons

> hide sel atoms

> select #2/A:227

10 atoms, 10 bonds, 1 residue, 1 model selected  

> color sel orange red

> select #2/A:259

10 atoms, 10 bonds, 1 residue, 1 model selected  

> color sel orange red

> select clear

> save "D:/林铭珍/研究生/课题/RSV/实验材料/RNA连接酶/chimera/equip+active site
> 6pzk(109-140)(591-777)(1156-1260）and 8odo(1-57)(118-412)(415-487).cxs"

——— End of log from Mon Jan 6 16:01:17 2025 ———

opened ChimeraX session  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  

> select #1/A:595

6 atoms, 5 bonds, 1 residue, 1 model selected  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  

> select #1/A:595

6 atoms, 5 bonds, 1 residue, 1 model selected  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\core\triggerset.py", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1069, in proxy_handler  
s._changes_cb(*args)  
File "D:\download\ChimeraX 1.8\bin\Lib\site-
packages\chimerax\atomic\molobject.py", line 1255, in _changes_cb  
if self.structure == None:  
^^^^^^^^^^^^^^  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
Error processing trigger "changes":  
TypeError: Cannot instantiate Python class corresponding to C++ class
atomstruct::GraphicsChanges  
  
File "D:\download\ChimeraX 1.8\bin\Lib\site-packages\chimerax\atomic\molc.py",
line 91, in get_prop  
cget(self._c_pointer_ref, 1, v_ref)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.13587 Core Profile Forward-Compatible Context 19.40.48.05 26.20.14048.5000
OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: windows

Manufacturer: LENOVO
Model: 81XD
OS: Microsoft Windows 11 家庭中文版 (Build 22631)
Memory: 15,976,570,880
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 5 3550H with Radeon Vega Mobile Gfx  
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2024.6.2
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.1
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 24.1
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pywin32: 306
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
    WMI: 1.5.1

[Eric Pettersen]

Duplicate of #15396