Timeline



Jul 21, 2020:

11:29 PM Ticket #3537 (Problem matching GLYCAM templates) closed by Tristan Croll
duplicate: Addressing in #3538
5:33 PM Ticket #3540 (Fetch question) closed by pett
not a bug: fetch_file is for fetching data files that ChimeraX caches. web_fetch …
5:01 PM Ticket #3540 (Fetch question) created by Greg Couch
[…]
2:04 PM Ticket #3532 (Registration error: month must be in 1..12) closed by Greg Couch
fixed
12:21 PM Ticket #3539 (Problems with large de novo mmCIF structure) created by Tristan Croll
[…] Tristan_working_edited_Sc_20July20.cif
12:05 PM Ticket #3538 (Problem matching GLYCAM templates) created by kartik.manne@…
[…]
12:04 PM Ticket #3537 (Problem matching GLYCAM templates) created by kartik.manne@…
[…]
8:48 AM Ticket #3536 (Graphics driver crash) closed by pett
can't reproduce
5:59 AM Ticket #3536 (Graphics driver crash) created by chimerax-bug-report@…
[…]

Jul 20, 2020:

2:40 PM Ticket #872 (Add chirality property to atoms) closed by pett
fixed: Okay, as of tomorrow chirality is available from a template Atom's …
1:12 PM Ticket #3535 (Nucleotides: asking for distance from None) created by mks131@…
[…]
10:27 AM Ticket #3533 (color-by-attr problem) closed by pett
fixed: Hi Santiago, This problem was caused by a relatively recent code …
10:16 AM Ticket #872 (Add chirality property to atoms) reopened by Tristan Croll
It's taken much (much!) longer for me to get to the point of properly …
9:46 AM Ticket #3531 (ChimeraX startup: unsupported locale setting) closed by pett
fixed: Hopefully fixed 4 days ago #3306
9:40 AM Ticket #3530 (setattr type conflict) closed by pett
not a bug: Hi Santiago, Values for attributes created with 'setattr' have to …
9:34 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) closed by pett
not a bug
9:05 AM Ticket #3534 (Parsing complaint about Ligand Expo cif files) created by Tristan Croll
[…] core_components.cif
7:02 AM Ticket #3533 (color-by-attr problem) created by santiago.jus.are@…
[…]

Jul 19, 2020:

8:37 PM Ticket #3532 (Registration error: month must be in 1..12) created by tony.schaefer@…
[…]
6:05 PM Ticket #3531 (ChimeraX startup: unsupported locale setting) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #3530 (setattr type conflict) created by santiago.jus.are@…
[…]

Jul 18, 2020:

5:41 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) created by Tristan Croll
[…]
5:05 AM Ticket #3528 (Obsolete Blast hits) created by Tristan Croll
[…]
3:26 AM Ticket #3527 (pseudobond manager group_map property error when resetting session) created by p.albanese@…
[…]

Jul 17, 2020:

2:29 PM Ticket #3526 (Smorgasbord of GL errors) closed by Tom Goddard
can't reproduce: Same as #3521 and #3506, three different reporters. Out of memory in …
1:07 PM Ticket #3525 (Crash updating QQuickWindow) closed by pett
can't reproduce: I suspect this is related to ISOLDE's interface, since QQuickWindow is …
12:06 PM Ticket #3524 (Crash performing some kind of operation on a window) closed by pett
can't reproduce
12:02 PM Ticket #3523 (open .pdbqt: list index out of range) closed by pett
duplicate: Hi Santiago, Thanks for reporting this problem. It was fixed a few …
6:12 AM Ticket #3526 (Smorgasbord of GL errors) created by chimerax-bug-report@…
[…]
2:52 AM Ticket #3525 (Crash updating QQuickWindow) created by chimerax-bug-report@…
[…]
2:25 AM Ticket #3524 (Crash performing some kind of operation on a window) created by chimerax-bug-report@…
[…]

Jul 16, 2020:

2:50 PM Ticket #3523 (open .pdbqt: list index out of range) created by santiago.jus.are@…
[…]
1:00 PM Ticket #3522 (prevent installing incompatible bundles) created by Greg Couch
This will be eventually be handled by pip. But for now, we will need …
8:37 AM Ticket #3521 (Many graphics errors) created by bejis@…
[…]
1:29 AM Ticket #3306 (ChimeraX startup: unsupported locale setting) closed by Greg Couch
fixed: Changed code to use hardcoded strftime and strptime for our time …

Jul 15, 2020:

11:30 PM Ticket #3520 (Some kind of graphics crash running ISOLDE) created by ville.paavilainen@…
[…]
5:46 PM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) closed by Tom Goddard
fixed: Fixed. I made the webcam handle the case when the camera changes the …
3:56 PM Ticket #3519 (vseries arg not working) closed by pett
fixed: Indeed, just adding "batch='true'" to all formats fixed it. Fix …
2:18 PM Ticket #3516 (self._positions is None while dragging arrow) closed by pett
fixed: Catch non-2dlabels-command closure of arrows and remove those from …
11:38 AM Ticket #3477 (file names with spaces) closed by pett
not a bug: File names with spaces require quotes around them in an "open" …
10:35 AM Ticket #3173 (BLAST PDB web services being removed November 2020) reopened by pett
Updated Blast considerably slower because the new REST services don't …
9:26 AM Ticket #3518 (3D label: name 'session' is not defined) closed by Greg Couch
fixed: This was fixed the day after you downloaded ChimeraX. Please download …
9:21 AM Ticket #3519 (vseries arg not working) created by jaremko@…
[…]
5:12 AM Ticket #3518 (3D label: name 'session' is not defined) created by j.r.lewandowski@…
[…]
4:55 AM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) created by j.r.lewandowski@…
[…]
12:38 AM Ticket #3516 (self._positions is None while dragging arrow) created by chimerax-bug-report@…
[…]

Jul 14, 2020:

6:33 PM Ticket #3465 (tape measure to surface crashes) closed by Tom Goddard
can't reproduce: No reply from reporter.
6:29 PM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) closed by Tom Goddard
duplicate: Yeah, the clip cap error was also fixed the day after it was …
5:30 PM Ticket #3515 (Fetch biological assemblies from PDB for NIH 3D) created by phil.cruz@…
Phil Cruz and Darrell Hurt say the NIH 3D pipeline needs ChimeraX to …
5:26 PM Ticket #3510 (Problem drawing Pseudobond and/or saving session) closed by Tom Goddard
can't reproduce: It appears that you showed some distances, deleted some distances, …
4:59 PM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) closed by Tom Goddard
nonchimerax: For the spin movie problem it is good to inspect the error message …
3:40 PM Ticket #3514 (Type registration conflict) closed by pett
not a bug: Hi Jared, Thanks for reporting this problem. When setattr with …
1:30 PM Ticket #3514 (Type registration conflict) created by jbard@…
[…] eIF3a.cxc
10:47 AM Ticket #3173 (BLAST PDB web services being removed November 2020) closed by pett
fixed
10:09 AM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) created by chimerax-bug-report@…
[…]
9:28 AM Ticket #3512 (conference command: TimeoutError: [Errno 60] Operation timed out) created by goddard@…
[…]
8:40 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) closed by pett
duplicate: Duplicate of #3457
7:22 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #3510 (Problem drawing Pseudobond and/or saving session) created by allenwu1991@…
[…]

Jul 13, 2020:

5:33 PM Ticket #3353 (Flatten bundle hierarchy) closed by Tom Goddard
fixed: I flattened map.data, map.fit, map.filter, map.series to map_data, …
4:13 PM Ticket #3506 (GL error extravaganza) closed by Tom Goddard
nonchimerax: All "out of memory" errors in OpenGL calls including Qt gui drawing …
3:38 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) closed by pett
fixed: Hi Henry, I believe this problem is fixed in the daily build (your …
2:58 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) created by henry.nguyen@…
[…] full_mNb6_rsr24-coot-5.deposit_000.cif
2:28 PM Ticket #3507 (3D labels: name 'session' is not defined) closed by Greg Couch
fixed: Fixed.
2:06 PM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) closed by pett
fixed: Switched ViewdockX code from using open() directly to …
12:25 PM Ticket #3508 (ISOLDE's self.selected_model is dead) created by gyadav@…
[…]
12:00 PM Ticket #3507 (3D labels: name 'session' is not defined) created by ubaumann@…
[…]
10:38 AM Ticket #3506 (GL error extravaganza) created by chimerax-bug-report@…
[…]
10:20 AM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) created by chimerax-bug-report@…
[…]
8:54 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Eva, Thanks for reporting this problem. It was fixed a couple of …
8:45 AM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) created by ulrich@…
[…]
7:37 AM Ticket #3503 (Main graphics not shown when window maximized) created by tillsten@…
[…]
2:18 AM Ticket #3502 ("realistic" lipid bilayer depiction) created by Tristan Croll
[…] complex_i_images.tar.gz

Jul 12, 2020:

3:31 PM Ticket #3501 (Problem saving map: No such file or directory) created by prive@…
[…]
8:30 AM Ticket #3500 (Problem simulating glycans) created by mar2294@…
[…]
4:45 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by eva.bertosin@…
[…]

Jul 10, 2020:

8:41 AM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by pett
duplicate: Hi, Thanks for reporting this problem. It was fixed around the …
6:31 AM Ticket #3498 ("conference start": Connection reset by peer) created by phil.cruz@…
[…]
5:41 AM Ticket #3497 (Bundle builder failing on Mac) created by Tristan Croll
[…]

Jul 9, 2020:

11:57 PM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') created by g.ysuda@…
[…]
5:16 PM ChangeLog edited by Elaine Meng
(diff)
5:15 PM ChangeLog edited by Elaine Meng
(diff)
4:30 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) closed by pett
fixed: Hi Caitlyn, Thanks for reporting this problem. I have just fixed it, …
3:55 PM Ticket #3494 (Graphics driver / shader crash(?)) closed by Tom Goddard
nonchimerax: Typical Apple Intel graphics driver crash: "Graphics hardware …
3:48 PM Ticket #3493 (Strudel Score: self.map_chim is None) closed by pett
nonchimerax
3:06 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) created by tongc@…
[…] 4hydroxytamoxifen_outF1.pdbqt
12:06 PM Ticket #3210 (develop stragegy for updating JavaScript toolkits embedded in ui module) closed by Greg Couch
wontfix
12:05 PM Ticket #3158 (Bogus Linux test failures) closed by Greg Couch
fixed: Redid linux build script to avoid this.
11:53 AM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) closed by Greg Couch
fixed: Fixed. Serialization code understood tinyarrays, but the layer above …
11:29 AM Ticket #3494 (Graphics driver / shader crash(?)) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #3493 (Strudel Score: self.map_chim is None) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #3492 (Try to continue on past session-restore error) created by Tristan Croll
[…]

Jul 8, 2020:

7:45 PM ChangeLog edited by Tom Goddard
(diff)
7:44 PM ChangeLog edited by Tom Goddard
(diff)
5:46 PM Ticket #2111 (SetupTools version number "normalisation" breaks bundle_builder) closed by Greg Couch
fixed: Bundle builder now canonicalizes the version number to match setuptools.
5:44 PM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) reopened by pett
3:30 PM Ticket #3488 (Need Info.plist description of camera usage) closed by Tom Goddard
fixed: Fixed. Current Mac ChimeraX daily build on download page now has …
2:37 PM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) created by r.frank@…
[…] chimerax_error.md
10:41 AM Ticket #3471 (Probable memory corruption) closed by pett
fixed: Fix available in next daily build.
9:27 AM Ticket #3489 (Probable memory corruption) closed by pett
duplicate: This is duplicate to both #3484 and #3471

Jul 7, 2020:

6:12 PM Ticket #3487 (Need Info.plist description of camera usage) closed by Tom Goddard
duplicate: I believe the crash is because the notarized ChimeraX uses Apple's …
5:07 PM Ticket #3490 (add restart button to dialog that says updated bundle is in use) created by Greg Couch
See ticket #3485 for the confusion. There should be two buttons …
4:16 PM Ticket #3486 ("webcam on" command does not work on Windows) closed by Tom Goddard
not a bug: The webcam command is not in ChimeraX 1.0. It was added 2 days ago …
2:15 PM Ticket #3489 (Probable memory corruption) created by goddard@…
[…]
11:20 AM Ticket #3488 (Need Info.plist description of camera usage) created by avradip.chatterjee@…
[…]
10:33 AM Ticket #3487 (Need Info.plist description of camera usage) created by chimerax-bug-report@…
[…]
9:49 AM Ticket #3486 ("webcam on" command does not work on Windows) created by samimishu@…
[…]
9:01 AM Ticket #3485 (Problem with installation) closed by pett
not a bug: Hi Sepideh, That message simply means that the updated ISOLDE bundle …
8:58 AM Ticket #3484 (Probable memory corruption) closed by pett
duplicate: Added information to ticket #3471

Jul 6, 2020:

3:27 PM Ticket #3485 (Problem with installation) created by svalimehr@…
[…] [[Image(...)]]
12:35 PM Ticket #3484 (Probable memory corruption) created by philipp.milkereit@…
[…]
10:19 AM StartDaily created by Tom Goddard
10:16 AM WikiStart edited by Tom Goddard
(diff)
9:06 AM Ticket #3482 (Movie recording problem) closed by pett
duplicate: Redirected to chimera-users list
8:53 AM Ticket #3480 (Opening BLAST hit: 'NoneType' object is not subscriptable) closed by pett
fixed: This has been fixed in the daily build for a week or two. Hopefully …
8:47 AM Ticket #3479 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
fixed
5:14 AM Ticket #3483 (Crash in garbage collection during session restore) created by chimerax-bug-report@…
[…]

Jul 5, 2020:

11:27 AM Ticket #3482 (Movie recording problem) created by arecco.niccolo@…
[…] 6NQ3_Suz12_AS_event.cxc

Jul 4, 2020:

3:36 PM Ticket #3481 (scipy can't import _uarray) created by chimerax-bug-report@…
[…]
6:18 AM Ticket #3480 (Opening BLAST hit: 'NoneType' object is not subscriptable) created by Tristan Croll
[…]

Jul 3, 2020:

2:53 PM Ticket #3479 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by chimerax-bug-report@…
[…]
11:09 AM Ticket #3478 (Could not get OpenGL vendor string) created by phatdip@…
[…]
10:45 AM Ticket #3477 (file names with spaces) created by tony.schaefer@…
[…]
2:47 AM Ticket #3451 (ISOLDE's self.selected_model is dead) closed by Tristan Croll
fixed: Ancient version, and I *think* most of what caused this is fixed. …

Jul 2, 2020:

3:52 PM Ticket #3476 (Problems reporting Toolshed updates available) created by Tom Goddard
Two problems with the toolshed update mechanism: 1) It is reporting …
3:50 PM Ticket #3463 (map jumps during mouse rotation / bad toolshed reporting) closed by Tom Goddard
fixed: Fixed. When using Mac trackpad multifinger drags I sometimes observed …
2:09 PM Ticket #3313 ("Vestigial" ViewDockX can interfere with session restore) closed by pett
fixed: Uploaded the 1.7 version to the Toolshed.
1:57 PM Ticket #1321 ("binary" bundles) closed by pett
duplicate: Now covered by ticket #3354
1:54 PM Ticket #2701 (handle sub packages split between user and app install areas) closed by pett
duplicate: This is now covered by ticket #3353
1:17 PM Ticket #3475 (Move toolshed update notification into bundle) created by pett
The user notification of available bundle updates needs to be moved …
12:58 PM Ticket #3474 (windows intel graphics driver is fixed) closed by Greg Couch
fixed: Fixed by limiting fix to 6708 < build < 8280.
12:56 PM Ticket #3474 (windows intel graphics driver is fixed) created by Greg Couch
Intel graphics driver 8280 fixes the problems with Qt, and our …
12:48 PM Ticket #3473 (Plugin to Ligand Expo) created by Tristan Croll
Would be really nice to have an interface to the Ligand-Expo (and/or …
11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) closed by Tom Goddard
fixed
11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) reopened by Tom Goddard
11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) closed by Tom Goddard
can't reproduce: The user deleted a map and then tried to fit it into a segment. The …
11:17 AM Ticket #3468 (Crash saving STL of large structure + surfaces) closed by Tom Goddard
fixed: Fixed. The crash is because the STL writer was not handling files …
10:39 AM Ticket #3472 (Crash in graphics driver) closed by pett
nonchimerax
10:27 AM Ticket #3470 (Crash in shader?) closed by Tom Goddard
nonchimerax: Crash in Apple graphics driver on 2012 iMac with NVIDIA GeForce GTX …
9:51 AM Ticket #3467 (Crash in graphics driver) closed by Tom Goddard
nonchimerax: The Apple graphics driver crashed with error message "Graphics …
7:35 AM Ticket #3472 (Crash in graphics driver) created by georgios.hatzopoulos@…
[…]
5:38 AM Ticket #3471 (Probable memory corruption) created by philipp.milkereit@…
[…]
4:50 AM Ticket #3470 (Crash in shader?) created by chimerax-bug-report@…
[…]

Jul 1, 2020:

10:57 PM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) created by chimerax-bug-report@…
[…]
2:36 PM Ticket #3468 (Crash saving STL of large structure + surfaces) created by borisz@…
[…]
2:09 PM Ticket #3467 (Crash in graphics driver) created by georgios.hatzopoulos@…
[…]
12:51 PM Ticket #3466 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by eferri@…
[…]
12:27 PM ChangeLog edited by Elaine Meng
(diff)
11:15 AM Ticket #3464 (partial surface mesh) closed by pett
fixed: Generated style command now includes the surface model.
9:44 AM Ticket #3465 (tape measure to surface crashes) created by dirk.fahrenkamp@…
[…]
9:40 AM Ticket #3462 (clashes: 'dict_values' object has no attribute 'sort') closed by pett
fixed
9:33 AM Ticket #3461 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce: Another possible instance of closing a dialog over a frozen "drop …
9:05 AM Ticket #3464 (partial surface mesh) created by rory.gordon.19@…
[…]
6:20 AM Ticket #3463 (map jumps during mouse rotation / bad toolshed reporting) created by rory.gordon.19@…
[…]

Jun 30, 2020:

10:24 PM Ticket #3462 (clashes: 'dict_values' object has no attribute 'sort') created by chimerax-bug-report@…
[…]
8:49 PM Ticket #3461 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
6:10 PM Ticket #3460 (Atom-spec parser slow and possibly leaks memory) created by pett
From chimera-users list: I'm testing driving ChimeraX (or Chimera) …
5:27 PM Ticket #3459 (VR error on button press: NoneType' object has no attribute 'inverse') closed by Tom Goddard
fixed: Fixed. When a mouse mode gets a VR hand event and called event.motion …
4:55 PM Ticket #3458 (Move picked models VR mode broken) closed by Tom Goddard
fixed: Fixed. Move picked models had never been tested in VR. Needed some …
4:54 PM Ticket #3459 (VR error on button press: NoneType' object has no attribute 'inverse') created by goddard@…
[…]
4:34 PM Ticket #3458 (Move picked models VR mode broken) created by goddard@…
[…]
3:55 PM Ticket #3457 (tape-measure mouse mode using dead MarkerSet) closed by Tom Goddard
fixed: Fixed. Tape measure marker set was closed. Subsequent measurements …
11:26 AM Ticket #3456 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce: Elaine reported basically the same thing. The scenario was that she …
10:16 AM Ticket #3457 (tape-measure mouse mode using dead MarkerSet) created by chimerax-bug-report@…
[…]
9:48 AM ChangeLog edited by Elaine Meng
(diff)
9:42 AM Ticket #3456 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
8:39 AM ChangeLog edited by Elaine Meng
(diff)

Jun 29, 2020:

10:35 PM Ticket #3453 (Changing id number of model with submodels broken) closed by Tom Goddard
fixed: Fixed. Changing model id to be child of another model did not add it …
8:45 PM Ticket #3455 (Session restore does not show surfaces) closed by Tom Goddard
fixed: Fixed. Made Drawing reset cached _displayed_scene_positions when any …
8:42 PM Ticket #3455 (Session restore does not show surfaces) created by goddard@…
[…]
5:18 PM ChangeLog edited by pett
(diff)
5:15 PM Ticket #3259 (Saved tool positions not preserving tabbing) closed by pett
fixed: Fix available in next daily, and am shooting for having it on the …
2:09 PM Ticket #3454 (Volume backing color wrong position if volume moved) closed by Tom Goddard
fixed: Fixed. Backing color was always being positioned as if position was …
1:59 PM Ticket #3454 (Volume backing color wrong position if volume moved) created by goddard@…
[…]
11:48 AM Ticket #3432 (Atoms.transform trigger) closed by pett
fixed: Okay, pushed an (untested) code change. Let me know if there's …
11:32 AM Ticket #3453 (Changing id number of model with submodels broken) created by goddard@…
[…]
9:21 AM Ticket #3452 (ISOLDE's self.selected_model is dead) closed by pett
duplicate: duplicate of #3451
2:16 AM Ticket #3452 (ISOLDE's self.selected_model is dead) created by chimerax-bug-report@…
[…]
2:15 AM Ticket #3451 (ISOLDE's self.selected_model is dead) created by chimerax-bug-report@…
[…]

Jun 27, 2020:

3:55 PM Ticket #3443 (Registration error: 'year' is an invalid keyword argument for __new__()) closed by Conrad Huang
fixed: Fixed in a824e555a. Not timedelta(year=1); it's …

Jun 26, 2020:

5:52 PM Ticket #3449 (Tried creating the same named 2dlabel twice) closed by Tom Goddard
duplicate: Duplicate of #3447. Fixed.
5:50 PM Ticket #3448 (ChimeraX bug report submission) closed by Tom Goddard
not a bug
5:48 PM Ticket #3450 (Re: [chimerax-users] Converting Chimera movie script) closed by Tom Goddard
not a bug
5:38 PM Ticket #3450 (Re: [chimerax-users] Converting Chimera movie script) created by goddard@…
[…]
5:28 PM Ticket #3449 (Tried creating the same named 2dlabel twice) created by chimerax-bug-report@…
[…]
5:21 PM Ticket #3447 (2D label errors) closed by Tom Goddard
fixed: Fixed. The code now gives a simple error and not a traceback when you …
3:50 PM Ticket #3448 (ChimeraX bug report submission) created by vid.sustar@…
[…] clip2.cxc
10:11 AM Ticket #3444 (crash when closing Rotamers dialog) closed by pett
can't reproduce: Qt must have gotten into a weird state with that docked / not docked …
9:59 AM Ticket #3447 (2D label errors) created by kater@…
Begin forwarded message: From: Lukas Kater Subject: Re: …
9:54 AM Ticket #3445 (Crash updating offscreen OpenGL) closed by Tom Goddard
can't reproduce: This is a Qt window toolkit crash with error "CGSGetSurfaceBounds …
9:11 AM Ticket #3446 (mmCIF extremely slow when RCSB Ligand-expo site is down) created by Tristan Croll
[…]

Jun 25, 2020:

4:50 PM Ticket #3445 (Crash updating offscreen OpenGL) created by apadavannil@…
[…]
4:16 PM Ticket #3436 (During undo, self._positions is None) closed by pett
fixed
3:27 PM Ticket #3444 (crash when closing Rotamers dialog) created by Elaine Meng
[…]
3:12 PM Ticket #3443 (Registration error: 'year' is an invalid keyword argument for __new__()) created by daniel.palma.i@…
[…]
10:43 AM Ticket #3439 (fetch timeout) closed by Tom Goddard
fixed: Fixed. Catch socket.timeout during fetch and report a simple error …
9:52 AM Ticket #3442 (Permission denied updating config files on Windows) created by bandresen@…
[…]
9:18 AM Ticket #3440 (fetch timeout) closed by pett
duplicate: Duplicate of #3439
8:58 AM Ticket #3438 (Clipper: focal_set is None) closed by pett
fixed: Hi Alexis, Glad Tristan could help you. You might also consider …
6:49 AM Ticket #3441 (somewhat unusual chain editing causes crash) created by Tristan Croll
[…]

Jun 24, 2020:

7:15 PM Ticket #3440 (fetch timeout) created by chimerax-bug-report@…
[…]
7:09 PM Ticket #3439 (fetch timeout) created by chimerax-bug-report@…
[…]
5:58 PM Ticket #3438 (Clipper: focal_set is None) created by rohou.alexis@…
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5:31 PM ChangeLog edited by pett
(diff)
2:55 PM Ticket #3433 (specifying nonexistent fasta file to "rna model" gives traceback) closed by Tom Goddard
fixed: Fixed. Now gives clear error message if sequence file is missing or …
2:11 PM Ticket #3432 (Atoms.transform trigger) reopened by Tom Goddard
Oh, I didn't know the Atoms.transform() method existed. Eric added …
10:57 AM Ticket #3437 (RFE: positions file include camera position) created by Elaine Meng
For my purposes, the positions file would be way more useful if it …
10:35 AM Ticket #3432 (Atoms.transform trigger) closed by Tom Goddard
fixed: There is a MODEL_POSITION_CHANGED trigger in core/models.py that seems …
9:41 AM Ticket #3436 (During undo, self._positions is None) created by chimerax-bug-report@…
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6:04 AM Ticket #3435 (2D molecule drawing) created by Tristan Croll
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3:18 AM Ticket #3434 (Problem writing command history) created by s.a.white@…
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Jun 23, 2020:

5:17 PM Ticket #3433 (specifying nonexistent fasta file to "rna model" gives traceback) created by Elaine Meng
[…]
1:32 PM Ticket #3432 (Atoms.transform trigger) created by Tristan Croll
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Jun 22, 2020:

5:34 PM Ticket #3431 (Add Fedora to RPM list) created by vlad_gunko@…
As a whole, a Linux version (on Fedora 32), x64.rpm, of ChimeraX 1.1 …
5:30 PM Ticket #3430 (Support >4 character atom names) created by vlad_gunko@…
Formats such as mol2 can have >4 character atom names. To avoid …
3:09 PM Ticket #3429 (Registration bundle initialization failed at startup) created by Tom Goddard
Mike Schmid reports by email that at startup he got “Bundle …
2:15 PM Ticket #3425 (RFE: command to add C-terminal oxygens) closed by pett
duplicate: Hmm, okay. Restricting AddH to a selection is ticket #2310.
9:26 AM Ticket #3428 (mmCIF not handling 'oversampling' arg) closed by pett
fixed: When I ported to the new 'open', missed the fact that the keyword is …
5:23 AM Ticket #3428 (mmCIF not handling 'oversampling' arg) created by Tristan Croll
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Jun 21, 2020:

11:05 AM Ticket #3427 (Crash drawing offscreen OpenGL) created by apadavannil@…
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