ChimeraX startup: unsupported locale setting

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-5.4.0-40-generic-x86_64-with-debian-bullseye-sid
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Errors  
---  
error | Bundle 'ChimeraX-Registration' custom initialization failed  
warning | Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 342, in initialize  
api._api_caller.initialize(api, session, self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/toolshed/__init__.py", line 1599, in initialize  
return cls._get_func(api, "initialize")(session, bi)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/registration/__init__.py", line 41, in initialize  
nag(session)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/registration/nag.py", line 28, in nag  
if not check_registration(logger=session.logger):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/registration/nag.py", line 49, in check_registration  
return _check_expiration(param, logger)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/registration/nag.py", line 130, in _check_expiration  
expires = _expiration_time(param)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/registration/nag.py", line 162, in _expiration_time  
locale.setlocale(locale.LC_TIME, save)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/locale.py", line 608, in setlocale  
return _setlocale(category, locale)  
locale.Error: unsupported locale setting  
  
UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/media/jitesh/Windows/Users/jites/Desktop/Dr.
> Vikram/ERK1/ERK1_result.receptor.pdbqt"

Chain information for ERK1_result.receptor.pdbqt #1  
---  
Chain | Description  
A | No description available  
  
Opened ERK1_result.receptor.pdbqt containing 1 structures (3489 atoms, 3555
bonds)  

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> open "/media/jitesh/Windows/Users/jites/Desktop/Dr.
> Vikram/ERK1/ERK1_result.pdbqt"

Summary of feedback from opening /media/jitesh/Windows/Users/jites/Desktop/Dr.
Vikram/ERK1/ERK1_result.pdbqt  
---  
warnings | Ignored bad PDB record found on line 2  
REMARK VINA RESULT: -12.2 0.000 0.000  
  
Ignored bad PDB record found on line 3  
REMARK 7 active torsions:  
  
Ignored bad PDB record found on line 4  
REMARK status: ('A' for Active; 'I' for Inactive)  
  
Ignored bad PDB record found on line 5  
REMARK 1 A between atoms: C19_19 and C20_2  
  
Ignored bad PDB record found on line 7  
REMARK 2 A between atoms: C21_4 and N5_3  
  
265 messages similar to the above omitted  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/open_command/dialog.py", line 150, in _qt_safe  
if data_format is None else " format " +
StringArg.unparse(data_format.nicknames[0])))  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/commands/run.py", line 31, in run  
results = command.run(text, log=log)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 101, in cmd_open  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2805, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 152, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/open_command/cmd.py", line 382, in collated_open  
return func(*func_args, **func_kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/viewdockx/__init__.py", line 56, in open  
return opener(session, data, file_name, True, True)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/viewdockx/pdbqt.py", line 6, in open_pdbqt  
_extract_metadata(session, f, structures)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/viewdockx/pdbqt.py", line 34, in _extract_metadata  
structures[model_index].viewdockx_data = vina_values  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/viewdockx/pdbqt.py", line 34, in _extract_metadata  
structures[model_index].viewdockx_data = vina_values  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 390.138
OpenGL renderer: GeForce MX130/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Aspire A515-51G
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
CPU: 4 Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz
Cache Size: 3072 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:          7.7Gi       2.3Gi       837Mi        97Mi       4.5Gi       5.0Gi
	Swap:         2.0Gi          0B       2.0Gi

Graphics:
	00:02.0 VGA compatible controller [0300]: Intel Corporation HD Graphics 620 [8086:5916] (rev 02)	
	Subsystem: Acer Incorporated [ALI] HD Graphics 620 [1025:1193]	
	Kernel driver in use: i915
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

[pett]

Hopefully fixed 4 days ago #3306

[pett]

(The ViewDockX problem was also fixed a few days ago).