#3481 closed defect (can't reproduce)
scipy can't import _uarray
Reported by: | Owned by: | Greg Couch | |
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Priority: | normal | Milestone: | |
Component: | Depiction | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 5l1f format mmcif fromDatabase pdb 5l1f title: AMPA subtype ionotropic glutamate receptor GluA2 in complex with noncompetitive inhibitor Perampanel [more info...] Chain information for 5l1f #1 --- Chain | Description A B C D | Glutamate receptor 2 Non-standard residues in 5l1f #1 --- 6ZP — 2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile NAG — N-acetyl-D-glucosamine > cartoon style modeHelix tube Traceback (most recent call last): File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\structure.py", line 1562, in _update_graphics_if_needed s[i]._update_graphics_if_needed() File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\structure.py", line 300, in _update_graphics_if_needed self._create_ribbon_graphics() File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\structure.py", line 553, in _create_ribbon_graphics ribbons_drawing.compute_ribbons(self) File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\ribbon.py", line 586, in compute_ribbons _make_ribbon_graphics(structure, self) File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\ribbon.py", line 128, in _make_ribbon_graphics centers = _arc_helix_geometry(coords, xs_mgr, displays, start, end, geometry) File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\chimerax\atomic\ribbon.py", line 957, in _arc_helix_geometry hc = HelixCylinder(coords[start:end]) File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\chimerax\atomic\sse.py", line 187, in __init__ self._try_curved() File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\chimerax\atomic\sse.py", line 392, in _try_curved self._curved_optimize(c_center, c_axis, c_radius) File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\chimerax\atomic\sse.py", line 436, in _curved_optimize opt = OptArc(self.coords, center, axis, major_radius) File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\chimerax\atomic\sse.py", line 85, in __init__ from scipy.optimize import minimize File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\scipy\\__init__.py", line 156, in <module> from . import fft File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\scipy\fft\\__init__.py", line 76, in <module> from ._basic import ( File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\scipy\fft\\_basic.py", line 1, in <module> from scipy._lib.uarray import generate_multimethod, Dispatchable File "D:\Chimera\ChimeraX 1.0\bin\lib\site-packages\scipy\\_lib\uarray.py", line 27, in <module> from ._uarray import * File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\scipy\\_lib\\_uarray\\__init__.py", line 114, in <module> from ._backend import * File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\scipy\\_lib\\_uarray\\_backend.py", line 15, in <module> from . import _uarray # type: ignore ImportError: DLL load failed: The specified module could not be found. Error processing trigger "graphics update": ImportError: DLL load failed: The specified module could not be found. File "D:\Chimera\ChimeraX 1.0\bin\lib\site- packages\scipy\\_lib\\_uarray\\_backend.py", line 15, in from . import _uarray # type: ignore See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 382.05 OpenGL renderer: GeForce 940M/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: LENOVO Model: 20BVA00UCD OS: Microsoft Windows 10 Pro (Build 18363) Memory: 16,861,487,104 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i5-5200U CPU @ 2.20GHz" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (3)
comment:1 by , 5 years ago
Cc: | added |
---|---|
Component: | Unassigned → Depiction |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → scipy can't import _uarray |
comment:2 by , 5 years ago
Resolution: | → can't reproduce |
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Status: | assigned → closed |
This should have been fixed by the newer Visual Studio runtime that comes with the ChimeraX 1.0 installer. Maybe the computer needed to be rebooted in this case? Unfortunately, this is an anonymous bug report, so we can't track down the details.
comment:3 by , 5 years ago
Probably a duplicate of #3214. Another possibility is that the user declined to install the newer Visual C++ runtime.
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Supposedly the fix for this went in on 5/15/20 (see #3214), yet this is happening in the 6/4/20 build.