Opened 5 years ago
Closed 5 years ago
#3493 closed defect (nonchimerax)
Strudel Score: self.map_chim is None
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.0 (2020-06-04)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show "Strudel Score"
Inject data called
fill selectors called
all chains (fill selectors) ['No chains found']
All chains (set data) ['A', 'B', 'C', 'D']
active chain (set data) A
Running: close all
> close all
Running: open
/Users/gerard/downloads/strudel/30178_1.6/out_old_mod/input/emd_30178.map
> open
> /Users/gerard/downloads/strudel/30178_1.6/out_old_mod/input/emd_30178.map
Opened emd_30178.map, grid size 300,300,300, pixel 0.82, shown at level 0.183,
step 2, values float32
Traceback (most recent call last):
File "/Users/gerard/Library/Application Support/ChimeraX/1.0/site-
packages/chimerax/strudel_score/tool.py", line 281, in open_project
self.load_map_model()
File "/Users/gerard/Library/Application Support/ChimeraX/1.0/site-
packages/chimerax/strudel_score/tool.py", line 303, in load_map_model
self.run_x(f'volume #{self.map_chim.id_string} sdLevel {SD_LEVEL + 2} style
mesh step 1')
AttributeError: 'NoneType' object has no attribute 'id_string'
AttributeError: 'NoneType' object has no attribute 'id_string'
File "/Users/gerard/Library/Application Support/ChimeraX/1.0/site-
packages/chimerax/strudel_score/tool.py", line 303, in load_map_model
self.run_x(f'volume #{self.map_chim.id_string} sdLevel {SD_LEVEL + 2} style
mesh step 1')
See log for complete Python traceback.
OpenGL version: 4.1 INTEL-12.10.19
OpenGL renderer: Intel(R) Iris(TM) Graphics 550
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro13,2
Processor Name: Intel Core i7
Processor Speed: 3.3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 267.0.0.0.0
SMC Version (system): 2.37f20
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G5033)
Kernel Version: Darwin 18.7.0
Time since boot: 2 days 7:38
Graphics/Displays:
Intel Iris Graphics 550:
Chipset Model: Intel Iris Graphics 550
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1927
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
LG UltraFine:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Strudel Score: self.map_chim is None |
comment:2 by , 5 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | accepted → closed |
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