Timeline



Mar 21, 2024:

9:40 PM Ticket #14799 (Crash in Clipper: int divide by zero) created by chimerax-bug-report@…
[…]
5:15 PM Ticket #14798 (hbonds: More than 2 coplanar positions specified) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #14797 (~ attribute test) created by olibclarke@…
[…]
1:21 PM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) closed by pett
can't reproduce: Probably need to use some Windows-specific codec, but without an …
12:51 PM ChangeLog edited by Elaine Meng
(diff)
12:16 PM 2024-3-21 edited by Zach Pearson
(diff)
12:00 PM 2024-3-21 edited by Zach Pearson
(diff)
11:53 AM 2024-3-21 edited by Zach Pearson
(diff)
11:35 AM 2024-3-21 created by Zach Pearson
11:03 AM DeveloperMeetings edited by Zach Pearson
(diff)
10:53 AM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Greg Couch
can't reproduce: remote display?
10:49 AM Ticket #14793 (QKeyEvent in drag/drop code) closed by pett
can't reproduce: Hi Vincent, Thanks for reporting this problem. This seems to be a …
10:34 AM Ticket #14792 (Crash in garbage collection) closed by pett
duplicate
10:33 AM Ticket #14791 (Crash in garbage collection) closed by pett
duplicate
3:07 AM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by lp212@…
[…]
2:16 AM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) created by chimerax-bug-report@…
[…]

Mar 20, 2024:

9:10 PM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
8:58 PM Ticket #14793 (QKeyEvent in drag/drop code) created by chimerax-bug-report@…
[…]
6:06 PM Ticket #14792 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
5:51 PM Ticket #14791 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
5:46 PM Ticket #14776 (AlphaFold query sequence problem) closed by Tom Goddard
fixed: Fixed in the daily build. More details in ticket #14777.
5:45 PM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) closed by Tom Goddard
fixed: Fixed in the daily build. More details in ticket #14777.
1:25 PM Ticket #14790 (Crash in python_instances_of_class) created by Ching-Fang.Chang@…
[…]
9:02 AM Ticket #14788 (Crash in garbage collection) closed by pett
duplicate
8:59 AM Ticket #14786 (Crash showing widget) closed by pett
can't reproduce
8:57 AM Ticket #14785 (SyntaxError opening map) closed by pett
duplicate
8:41 AM Ticket #14789 (Unknown crash) created by benjamin.myers@…
[…]
7:16 AM Ticket #14788 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
4:52 AM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by lp212@…
[…]
12:56 AM Ticket #14786 (Crash showing widget) created by chimerax-bug-report@…
[…]

Mar 19, 2024:

6:18 PM Ticket #14778 (scipy built for MacOS 12) closed by Tom Goddard
limitation: Unfortunately the Mac ARM scipy PyPi distribution requires macOS 12 or …
2:27 PM Ticket #14785 (SyntaxError opening map) created by chimerax-bug-report@…
[…]
1:19 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by pett
can't reproduce
12:10 PM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by Greg Couch
not a bug: If a user installs the .tar.gz version, then they are responsible for …
11:24 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) closed by pett
duplicate
11:20 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:33 AM Ticket #14784 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #14783 (Crash in python_instances_of_class while computing morph) created by chimerax-bug-report@…
[…]
5:32 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) created by chimerax-bug-report@…
[…]
1:58 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #14780 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
1:20 AM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #14778 (scipy built for MacOS 12) created by m.patzschke@…
[…]

Mar 18, 2024:

2:55 PM Ticket #10357 (Phenix water placement: name 'args' is not defined) closed by pett
fixed: Fixed in daily build
12:51 PM Ticket #10363 ('build peptide' convenience options) closed by pett
fixed: After discussion, not implementing strand/helix

Mar 17, 2024:

2:48 AM Ticket #14777 (Alphafold prediction: invalid character in the sequence) created by Tom Goddard
ChimeraX Alphafold prediction stopped working I believe on March 14, …

Mar 15, 2024:

12:12 PM Ticket #14776 (AlphaFold query sequence problem) created by diabellstar2500@…
[…]
10:48 AM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) closed by pett
duplicate: Duplicate of #14770
8:07 AM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) created by MCINNES@…
[…] [[Image(...)]]
2:32 AM Ticket #14774 (Nucleotide undo after deletion throws traceback) created by chimerax-bug-report@…
[…]
2:06 AM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) created by chimerax-bug-report@…
[…]

Mar 14, 2024:

7:20 PM Ticket #14765 (Missing dynamic libraries) closed by Greg Couch
wontfix: Those libraries are in …
7:12 PM Ticket #14772 (Bundle ChimeraX-NMRSTAR has no module) created by rsalinas@…
[…]
6:31 PM Ticket #14771 (AlphaFold2 colab notebook error) closed by Tom Goddard
not a bug: Your sequence ends in Q which is not a 1 letter code for the 20 …
6:13 PM Ticket #14767 (toolshed install: Non-existent wheel file) closed by pett
not a bug: User must be following some recipe where they are supposed to replace …
6:08 PM Ticket #14764 (Crash in garbage collection) closed by pett
duplicate
6:05 PM Ticket #14771 (AlphaFold2 colab notebook error) created by bregman3@…
[…]
6:02 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) created by deng.luo@…
Details in https://github.com/RBVI/ChimeraX/issues/40 Reported by …
5:45 PM Ticket #14769 (transparency command doesn't work on nucleotide representations) created by Elaine Meng
Unlike the color command, the transparency command has no "target f" …
5:04 PM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) created by deng.luo@…
[…] ChimeraX error while submitting feedback.png
4:15 PM Ticket #14767 (toolshed install: Non-existent wheel file) created by chimerax-bug-report@…
[…]

Mar 13, 2024:

10:12 PM Ticket #14766 (ChimeraX bug report submission) closed by Zach Pearson
invalid: I did not actually mean to submit this bug report.
10:11 PM Ticket #14766 (ChimeraX bug report submission) created by Zach Pearson
[…]
9:55 PM Ticket #14765 (Missing dynamic libraries) created by markus.meier@…
[…]
3:19 PM Ticket #14764 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:43 AM Ticket #14756 (Help Viewer: No module named 'pyqt') closed by Greg Couch
fixed: Fixed. Uses qtpy shim for qtpy.sip.
9:32 AM Ticket #14742 (Add Hydrogens: Singular matrix) closed by pett
not a bug: Hi Xylia, Thanks for supplying the structure. What is it supposed to …
8:59 AM Ticket #14762 (Unknown crash) closed by pett
can't reproduce
8:58 AM Ticket #14760 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:57 AM Ticket #14759 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:55 AM Ticket #14758 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:54 AM Ticket #14757 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
7:02 AM Ticket #14763 (glClear: invalid value) created by rhenriques08@…
[…]
6:11 AM Ticket #14762 (Unknown crash) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #14761 (Crash opening mmCIF file) created by jan.binovsky@…
[…]

Mar 12, 2024:

11:59 PM Ticket #14760 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14759 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14758 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14757 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14756 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
8:46 PM Ticket #14755 (tug after session restore: openmm.OpenMMException: Particle coordinate ...) created by maja.divjak@…
[…]
7:41 PM Ticket #14754 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by hgbrown@…
[…]
5:41 PM Ticket #14753 (Crash in garbage collection) closed by pett
duplicate
5:40 PM Ticket #14752 (Crash in registration dialog) closed by pett
can't reproduce
5:23 PM Ticket #9942 (Implement ribbon worms) closed by pett
fixed: "Worms" tab in Render By Attribute tool as of tomorrow's build.
3:14 PM Ticket #14753 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:03 PM Ticket #14752 (Crash in registration dialog) created by chimerax-bug-report@…
[…]
12:29 PM ChangeLog edited by Elaine Meng
(diff)
11:21 AM Ticket #14751 (Crash handling text input) closed by pett
can't reproduce
11:20 AM Ticket #14750 (Bad/non-SDF file) closed by pett
not a bug
9:55 AM Ticket #14747 (sqm failure) closed by pett
can't reproduce: sqm was not rerun because "No convergence in SCF" was not in the …
9:40 AM Ticket #14746 (How "name" works) closed by pett
not a bug: Hi Oli, The basic form of the "name" command remembers the spec you …
9:29 AM Ticket #14745 (Crash in Open→File dialog) closed by pett
can't reproduce
8:55 AM Ticket #14751 (Crash handling text input) created by chimerax-bug-report@…
[…]
7:02 AM Ticket #14750 (Bad/non-SDF file) created by chimerax-bug-report@…
[…]
6:18 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) created by wolfram.seifert@…
[…]
4:02 AM Ticket #14748 (ISOLDE: There is no registered Platform called "OpenCL") created by chimerax-bug-report@…
[…]

Mar 11, 2024:

5:55 PM Ticket #14747 (sqm failure) created by chimerax-bug-report@…
[…]
4:45 PM Ticket #14746 (How "name" works) created by olibclarke@…
[…]
3:32 PM Ticket #14745 (Crash in Open→File dialog) created by chimerax-bug-report@…
[…]
11:52 AM Ticket #14744 (Crash in garbage collection) closed by pett
duplicate
11:37 AM Ticket #14741 (Crash in python_instances_of_class) closed by pett
can't reproduce: User was clicking a check button when this happened, but not much to …
11:23 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:21 AM Ticket #14738 (Crash in garbage collection) closed by pett
duplicate: Hi Jan, Thanks for reporting this problem. We believe it is fixed in …
11:16 AM Ticket #14737 (Dead model in session.selection) closed by pett
duplicate: Should be fixed by the same fix as #10047
11:11 AM Ticket #14736 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
11:07 AM Ticket #14735 (Crash in garbage collection) closed by pett
duplicate
11:04 AM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
10:46 AM Ticket #14744 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:36 AM Ticket #14730 (Crash using Open dialog) closed by pett
can't reproduce
9:19 AM Ticket #14743 (Unreliable Z translation in mouse mode) created by olibclarke@…
[…]
7:30 AM Ticket #14742 (Add Hydrogens: Singular matrix) created by petersx1@…
[…]
4:12 AM Ticket #14741 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
3:11 AM Ticket #14740 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
3:02 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:42 AM Ticket #14738 (Crash in garbage collection) created by jan.binovsky@…
[…]

Mar 9, 2024:

10:01 PM Ticket #14737 (Dead model in session.selection) created by chimerax-bug-report@…
[…]
9:10 PM Ticket #14736 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:42 PM Ticket #14735 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
12:56 PM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]

Mar 9, 2024:

3:14 AM Ticket #14733 (Session restore: blast protein: KeyError: '_protein_chain') created by chimerax-bug-report@…
[…]

Mar 8, 2024:

6:41 PM Ticket #14732 (volume command fastEncloseVolume does not give right level when ...) closed by Tom Goddard
fixed: Fixed. Made both fastEncloseVolume and encloseVolume set the surface …
6:30 PM Ticket #14732 (volume command fastEncloseVolume does not give right level when ...) created by goddard@…
[…]
6:10 PM ChangeLog edited by Elaine Meng
(diff)
4:39 PM Ticket #14731 (cannot load libXau) created by chimerax-bug-report@…
[…]
12:59 PM Ticket #14730 (Crash using Open dialog) created by chimerax-bug-report@…
[…]
12:46 PM Ticket #14721 (ISOLDE: error registering 'isolde' command) closed by Tom Goddard
nonchimerax: I agree it is a numpy bug. Looks like it was probably introduced into …
12:32 PM Ticket #14729 (map_series: model is None) created by chimerax-bug-report@…
[…]
12:14 PM Ticket #14728 (Cannot open cxc files from terminal with daily release) created by Mary.Clay@…
[…]
10:28 AM Ticket #14701 (Fix atomic_lib compiler warnings) closed by pett
fixed: Changed code and added compiler flags to eliminate the warnings.
8:52 AM Ticket #14727 (Crash in garbage collection) closed by pett
duplicate
8:48 AM Ticket #14726 (Crash running file-save dialog) closed by pett
can't reproduce
8:44 AM Ticket #14725 (BlastProtein: wrapped C/C++ object of type QProgressBar has been deleted) closed by pett
can't reproduce
7:14 AM Ticket #14727 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 7, 2024:

8:03 PM Ticket #14726 (Crash running file-save dialog) created by chimerax-bug-report@…
[…]
2:35 PM 2024-3-7 edited by Zach Pearson
(diff)
2:08 PM Ticket #14725 (BlastProtein: wrapped C/C++ object of type QProgressBar has been deleted) created by chimerax-bug-report@…
[…]
1:31 PM Ticket #14724 (Crash in event loop) closed by pett
can't reproduce
1:23 PM Ticket #14722 (Graphics kernel error) closed by pett
can't reproduce: Hi Alexander, Thanks for reporting this error. It is a problem in …
1:14 PM Ticket #14724 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:54 AM Ticket #14723 (Problem with MSF alignment file) created by sanjana.vasanth@…
[…]
12:34 AM Ticket #14722 (Graphics kernel error) created by arotsch@…
[…]

Mar 6, 2024:

5:17 PM Ticket #14721 (ISOLDE: error registering 'isolde' command) created by torquato@…
[…]
4:46 PM Ticket #14719 (Crash in garbage collection) closed by pett
duplicate
4:45 PM Ticket #14718 (Crash in QOpenGLContext::makeCurrent) closed by pett
can't reproduce: Hi Andrew, Thanks for reporting this problem. The crash was in the …
3:49 PM Ticket #14720 (ISOLDE: failure registering 'isolde' command) created by torquato@…
[…]
2:26 PM Ticket #14719 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #14718 (Crash in QOpenGLContext::makeCurrent) created by amacbride@…
[…]
1:23 PM Ticket #14717 (AlphaFold error plot does not suggest PAE file) closed by Tom Goddard
fixed: Fixed. The PAE error plot code was setting the structure menu and did …
1:12 PM Ticket #14717 (AlphaFold error plot does not suggest PAE file) created by goddard@…
[…]
12:01 PM Ticket #14716 (Crash in garbage collection) closed by pett
duplicate
12:00 PM Ticket #14715 (Crash in garbage collection) closed by pett
can't reproduce
11:28 AM Ticket #14716 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #14715 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:57 AM Ticket #14714 (Cannot write to configuration directory) created by chimerax-bug-report@…
[…]
9:49 AM Ticket #14709 (Dock Prep/AddH using dead AtomicStructureListWidget) closed by pett
can't reproduce: Don't see how the AddH tool could still be around yet it's …
9:28 AM Ticket #14712 (Crash in garbage collection) closed by pett
duplicate
9:24 AM Ticket #14710 (Qt platform plugin could not be initialized) closed by pett
duplicate: duplicate/predecessor to #14711
9:09 AM Ticket #14708 (Crash in event loop after AlphaFold prediction) closed by pett
can't reproduce
5:57 AM Ticket #14713 (DSSP output in ChimeraX) created by r.joosten@…
[…]
5:10 AM Ticket #14712 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 5, 2024:

10:31 PM Ticket #14711 (Qt platform plugin could not be initialized) created by 1053094178@…
[…] [[Image(...)]]
10:21 PM Ticket #14710 (Qt platform plugin could not be initialized) created by 1053094178@…
[…]
4:47 PM Ticket #14709 (Dock Prep/AddH using dead AtomicStructureListWidget) created by chimerax-bug-report@…
[…]
3:34 PM Ticket #14708 (Crash in event loop after AlphaFold prediction) created by chimerax-bug-report@…
[…]
2:12 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) reopened by Tom Goddard
ChimeraX 1.7.1 on Intel Mac is supposed to work with macOS 10.14 …
1:54 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) closed by pett
not a bug: Hi Martin, The last version of ChimeraX that worked with MacOS 10.14 …
1:16 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) created by martin.horvath@…
[…] Mid-2014 Mac Mojave.png
12:16 PM Ticket #14704 (Picking code: Singular matrix) closed by Tom Goddard
can't reproduce: User was trying to select with the mouse and some model has a singular …
12:05 PM Ticket #14705 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:44 AM 2024-3-7 created by Tom Goddard
11:43 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:12 AM Ticket #14706 (Crash in garbage collection) closed by pett
duplicate
9:02 AM Ticket #14703 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
8:59 AM Ticket #14706 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:00 AM Ticket #14705 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
5:22 AM Ticket #14704 (Picking code: Singular matrix) created by chimerax-bug-report@…
[…]
2:45 AM Ticket #14703 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Mar 4, 2024:

5:29 PM Dev2024-3-4 edited by Tom Goddard
(diff)
5:27 PM Dev2024-3-4 edited by Tom Goddard
(diff)
5:03 PM Ticket #14702 (Atomic bundle cython code deprecation warning about "IF" statement) closed by pett
fixed: Fix: …
2:34 PM Ticket #14696 (Build Structure: adjust bond length: dead bond) closed by pett
fixed
12:00 PM Ticket #14702 (Atomic bundle cython code deprecation warning about "IF" statement) created by Tom Goddard
Our updated Cython is giving a deprecation warning about the IF …
11:57 AM Ticket #14701 (Fix atomic_lib compiler warnings) created by Tom Goddard
I get various compiler warning compiling atomic_lib on Mac ARM (XCode …
11:37 AM Ticket #14700 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:35 AM Ticket #14698 (Crash setting volume level) closed by Tom Goddard
can't reproduce: Could be out of memory. Machine only has 8 GB.
11:32 AM Ticket #14694 (Graphics crash, macOS 11.7.9, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:28 AM Ticket #14699 (Unknown crash) closed by pett
can't reproduce
11:24 AM Ticket #14697 (Crash handling text input) closed by pett
can't reproduce
11:19 AM Ticket #14695 (Unknown crash) closed by pett
can't reproduce: There's no current thread?!?
11:16 AM Ticket #14693 (Crash in garbage collection) closed by pett
duplicate
11:14 AM Ticket #14692 (python_instances_of_class: Structure object is None) closed by pett
duplicate
11:01 AM Ticket #14691 (Crash in garbage collection) closed by pett
duplicate
10:36 AM Ticket #14700 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
10:23 AM Ticket #14690 (Crash in garbage collection) closed by pett
duplicate: Hi Peter, Thanks for reporting this problem. We believe it is fixed …
10:19 AM Ticket #14689 (Crash in garbage collection) closed by pett
duplicate: Hi Tolga, Thanks for reporting this problem. We believed we have …
6:56 AM Ticket #14699 (Unknown crash) created by chimerax-bug-report@…
[…]

Mar 3, 2024:

11:50 PM Ticket #14698 (Crash setting volume level) created by chimerax-bug-report@…
[…]
7:31 PM Ticket #14697 (Crash handling text input) created by chimerax-bug-report@…
[…]
5:31 PM Ticket #14696 (Build Structure: adjust bond length: dead bond) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #14695 (Unknown crash) created by chimerax-bug-report@…
[…]

Mar 2, 2024:

5:36 AM Ticket #14694 (Graphics crash, macOS 11.7.9, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]

Mar 1, 2024:

11:10 PM Ticket #14693 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:31 PM Ticket #14692 (python_instances_of_class: Structure object is None) created by chimerax-bug-report@…
[…]
6:02 PM Ticket #14554 (Small checkboxes on second monitor) closed by pett
limitation: There is no stylesheet tomfoolery going on.
5:43 PM Ticket #9610 (Phi-setting error interferes with Selection Inspector) closed by pett
fixed: Phi/psi/etc. setters are supposed to ignore errors, but …
3:49 PM Ticket #14677 (Combine: Structure object is None) closed by pett
fixed: Hi Matthias, Thanks for reporting this problem. A recent fix for a …
3:27 PM Ticket #14682 (Crash setting active window) closed by pett
can't reproduce: Hi Huping, I would recommend upgrading to the ChimeraX 1.7.1 release. …
2:35 PM Ticket #14691 (Crash in garbage collection) created by o.bozkurt@…
[…]
1:39 PM Ticket #14690 (Crash in garbage collection) created by hps@…
[…]
1:31 PM Ticket #14689 (Crash in garbage collection) created by o.bozkurt@…
[…]
12:18 PM Ticket #14684 (Failed to initialize graphics backend for OpenGL / Failed to create ...) closed by Tom Goddard
nonchimerax: Seems like a Mac Qt 6.3 bug failing to create the OpenGL context for …
11:45 AM Ticket #14688 (wrapped C/C++ object of type MultiColorButton has been deleted) closed by pett
duplicate
11:43 AM Ticket #14687 (Crash in garbage collection) closed by pett
duplicate
11:41 AM Ticket #14686 (Crash getting Residue.atoms during MatchMaker) closed by pett
can't reproduce: Cannot reproduce using the actual 1.7 release.
11:32 AM Ticket #14688 (wrapped C/C++ object of type MultiColorButton has been deleted) created by chimerax-bug-report@…
[…]
11:29 AM Ticket #14685 (Crash in garbage collection) closed by pett
duplicate
11:24 AM Ticket #14683 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
11:22 AM Ticket #14687 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
11:17 AM Ticket #14681 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:16 AM Ticket #14680 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:13 AM Ticket #14686 (Crash getting Residue.atoms during MatchMaker) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #14679 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
11:06 AM Ticket #14678 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
11:00 AM Ticket #14675 (AlphaFold JSON opened as MOLE JSON) closed by pett
duplicate
10:57 AM Ticket #14672 (wrapped C/C++ object of type MultiColorButton has been deleted) closed by pett
duplicate
10:56 AM Ticket #14670 (Crash in timer callback) closed by pett
can't reproduce
9:49 AM Ticket #14685 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:57 AM Ticket #14684 (Failed to initialize graphics backend for OpenGL / Failed to create ...) created by chimerax-bug-report@…
[…]
7:22 AM Ticket #14683 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
7:07 AM Ticket #14682 (Crash setting active window) created by hwang@…
[…]
5:28 AM Ticket #14681 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #14680 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chenzhd@…
[…]
5:00 AM Ticket #14679 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
2:56 AM Ticket #14678 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
1:21 AM Ticket #14677 (Combine: Structure object is None) created by matthias.vorlaender@…
[…]

Feb 29, 2024:

10:18 PM Ticket #14676 (MemoryError saving session after many 'vop zone' commands) created by chimerax-bug-report@…
[…]
5:30 PM Ticket #14675 (AlphaFold JSON opened as MOLE JSON) created by chimerax-bug-report@…
[…]
5:22 PM 2024-2-29 edited by Scooter Morris
(diff)
5:21 PM Ticket #14674 (Use a UCSFChimeraX Meta organization for Quest headset developer accounts) created by Tom Goddard
Currently the 4 lab Quest headsets have developer mode enabled so they …
5:18 PM Ticket #14673 (Make all lab Quest VR headsets use the same Meta account) created by Tom Goddard
Would like to reset all our Quest headsets to use a single Meta …
4:11 PM Ticket #14572 (GUI placed at weird position on startup) closed by pett
fixed: Okay, I believe in tomorrow's daily build that the window will have a …
3:46 PM Ticket #14672 (wrapped C/C++ object of type MultiColorButton has been deleted) created by chimerax-bug-report@…
[…]
3:26 PM Ticket #14671 (Multitouch modes for BioViz lab wall touch screen) created by phil.cruz@…
Multitouch would work better on the large display if rotation and zoom …
3:19 PM Ticket #14670 (Crash in timer callback) created by chimerax-bug-report@…
[…]
2:41 PM 2024-2-29 edited by Tom Goddard
(diff)
2:11 PM Ticket #14665 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
1:32 PM Ticket #14669 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:30 PM Ticket #14668 (Crash while asking for registration) closed by pett
can't reproduce
1:28 PM Ticket #14666 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
1:12 PM Ticket #14669 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:01 PM Ticket #14668 (Crash while asking for registration) created by chimerax-bug-report@…
[…]
12:52 PM Ticket #14667 (Failed to initialize graphics backend for OpenGL) created by torquato@…
[…]
12:43 PM Ticket #14666 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
11:50 AM Ticket #14665 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
10:44 AM Ticket #14664 (Crash in event loop) closed by pett
can't reproduce
10:13 AM Ticket #14664 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:52 AM Ticket #14663 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:49 AM Ticket #14662 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
9:46 AM Ticket #14660 (Crash in garbage collection) closed by pett
duplicate
9:45 AM Ticket #14659 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
9:44 AM Ticket #14658 (MemoryError opening mmCIF files) closed by pett
duplicate: Hi Rafiul, Thanks for reporting this problem. It has been fixed in …
9:42 AM Ticket #14657 (Chimera commands) closed by pett
not a bug: Asked and answered on the chimerax-users list (was using Chimera commands).
9:35 AM Dev2024-3-4 edited by Tom Goddard
(diff)
8:51 AM Ticket #14663 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
7:54 AM Ticket #14662 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
3:45 AM Ticket #14661 (PDB-REDO: Unknown polymer entity) created by r.xie@…
[…] 1cbs_final.cif
3:23 AM Ticket #14660 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Feb 28, 2024:

5:30 PM Ticket #14659 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
5:24 PM Ticket #9605 (Join models with peptide bond: insert-before residue not found in _residues) closed by pett
can't reproduce: Worked fine with 1gcn and 1zik, so would need access to the data to …
4:51 PM Ticket #14621 (Render by Attribute histogram: `bins` must be an integer, a string, or ...) closed by pett
limitation: When you define an attribute, ChimeraX needs to know what type its …
2:22 PM Ticket #14506 (Crash in garbage collection) closed by pett
fixed: Fixed the test case. There were two problems. First a little …
2:21 PM Ticket #14658 (MemoryError opening mmCIF files) created by m_noyon@…
[…] 8sy2.cif
2:06 PM Ticket #14506 (Crash in garbage collection) reopened by pett
12:07 PM Ticket #14657 (Chimera commands) created by cobey-heinen@…
[…]
12:00 PM Ticket #14651 (Startup warning: Replacing fetcher for pdb_nmr and format NMRSTAR...) closed by pett
fixed: This was fixed a little over a month ago, but the fix is only in 1.8. …
11:48 AM Ticket #14656 (Crash in garbage collection) closed by pett
can't reproduce
11:47 AM Ticket #14655 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:45 AM Ticket #14654 (Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
11:38 AM Ticket #14653 (Crash in event loop) closed by pett
can't reproduce
11:34 AM Ticket #14652 (Crash removing a row from a QFormLayout) closed by pett
can't reproduce
10:50 AM Ticket #14656 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
6:20 AM Ticket #14655 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
4:28 AM Ticket #14654 (Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
2:47 AM Ticket #14653 (Crash in event loop) created by chimerax-bug-report@…
[…]

Feb 27, 2024:

8:01 PM Ticket #14652 (Crash removing a row from a QFormLayout) created by chimerax-bug-report@…
[…]
6:59 PM Ticket #14651 (Startup warning: Replacing fetcher for pdb_nmr and format NMRSTAR...) created by goddard@…
[…]
5:28 PM Dev2024-3-4 created by Tom Goddard
5:28 PM 2024-2-29 created by Tom Goddard
5:27 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:37 PM Ticket #14646 (Crash cleaning up Collection pointers) closed by Tom Goddard
can't reproduce: This is a May 2023 ChimeraX 1.7 build, so most similar to ChimeraX …
1:30 PM Ticket #14650 (vop zone: ArrayMemoryError) closed by Tom Goddard
limitation: Error says numpy ran out of memory trying to allocate an 216 Mbyte …
1:19 PM Ticket #14649 (Crash in garbage collection) closed by pett
can't reproduce
1:13 PM Ticket #14647 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:02 PM Ticket #14645 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
1:00 PM Ticket #14643 (protein-molecule contact log issue) closed by pett
not a bug: Forwarded to chimeras-users list, where it was answered.
11:53 AM Ticket #14642 (Crash deleting Structure) closed by pett
can't reproduce
11:52 AM Ticket #14639 (Looks like Mac daily build is not notarized) closed by Tom Goddard
nonchimerax: Reverting AmberTools23 with the library paths referencing libraries …
11:50 AM Ticket #14641 (Crash in _cleanup) closed by pett
duplicate: _cleanup was removed pretty much for this reason
5:25 AM Ticket #14650 (vop zone: ArrayMemoryError) created by chimerax-bug-report@…
[…]
3:25 AM Ticket #14649 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:57 AM Ticket #14648 (SEQCROW: open_xyz: list index out of range) created by chimerax-bug-report@…
[…]
2:01 AM Ticket #14647 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:35 AM Ticket #14646 (Crash cleaning up Collection pointers) created by chimerax-bug-report@…
[…]
12:28 AM Ticket #14645 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]

Feb 26, 2024:

4:27 PM Dev2024-2-26 edited by Tom Goddard
(diff)
4:25 PM Dev2024-2-26 edited by Tom Goddard
(diff)
4:24 PM Dev2024-2-26 edited by Tom Goddard
(diff)
4:22 PM Dev2024-2-26 edited by Tom Goddard
(diff)
4:18 PM Ticket #14644 (Faster DICOM map registration) created by pett
Because add_map_format() is done from a custom initialization, many …
3:06 PM Dev2024-2-26 created by Tom Goddard
3:05 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:52 PM Ticket #14643 (protein-molecule contact log issue) created by mrodriguez.81@…
[…]
2:49 PM Ticket #14642 (Crash deleting Structure) created by chimerax-bug-report@…
[…]
2:27 PM Ticket #14641 (Crash in _cleanup) created by chimerax-bug-report@…
[…]
2:19 PM Ticket #14640 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by chimerax-bug-report@…
[…]
2:13 PM Training edited by Tom Goddard
(diff)
2:11 PM Training edited by Tom Goddard
(diff)
2:09 PM Training edited by Tom Goddard
(diff)
12:53 PM Ticket #14636 (MatchMaker: cannot access local variable 'concise_model_spec') closed by pett
fixed: Hi Luca, Thanks for reporting this problem. It only occurs when …
12:49 PM Ticket #14632 (Error in glBufferData) closed by Tom Goddard
can't reproduce: User opened a session and got a glBufferData() openGL error 1285 which …
12:42 PM Ticket #14635 (Crash processing focus-in touch event) closed by Tom Goddard
can't reproduce: This looks surely like a Qt window toolkit bug, it is deep in Qt …
12:16 PM Ticket #14639 (Looks like Mac daily build is not notarized) created by goddard@…
[…]
11:58 AM Ticket #14637 (Crash in garbage collection) closed by pett
can't reproduce
11:39 AM Ticket #14634 (Crash selecting aromatic rings) closed by pett
can't reproduce
10:45 AM Ticket #14630 (ISOLDE: crash in _background_load_ff) closed by Tristan Croll
fixed: Removed the background loading in ISOLDE 1.7.
7:56 AM Ticket #14638 (Crash in event loop) created by wxh180@…
[…]
7:35 AM Ticket #14637 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
7:17 AM Ticket #14636 (MatchMaker: cannot access local variable 'concise_model_spec') created by lp212@…
[…]
7:10 AM Ticket #14635 (Crash processing focus-in touch event) created by lp212@…
[…]
1:29 AM Ticket #14634 (Crash selecting aromatic rings) created by chimerax-bug-report@…
[…]

Feb 25, 2024:

3:14 PM Ticket #14633 (ISOLDE: 5-bond carbon) created by tmckeith@…
[…]

Feb 24, 2024:

9:53 PM Ticket #14632 (Error in glBufferData) created by chimerax-bug-report@…
[…]

Feb 23, 2024:

9:36 PM Ticket #14631 (ISOLDE: ResidueStepper references dead Structure) created by tmckeith@…
[…]
1:30 PM Ticket #14605 (Problem reading PSF file: invalid literal for int() with base 10) closed by pett
fixed: As per: …
1:00 PM Ticket #14630 (ISOLDE: crash in _background_load_ff) created by chimerax-bug-report@…
[…]
11:56 AM Ticket #14629 (Updates tool) created by pett
It seems to me that if you actually launch the Updates tool yourself, …
11:46 AM Ticket #14580 (preserve docked tool sizes) closed by pett
fixed: Okay, I preserve the docked tool's size as best I can, though it seems …
11:31 AM Ticket #14628 (PICKLUSTER treating PseudobondGroups as Structures) created by chimerax-bug-report@…
[…]
11:08 AM Ticket #14627 (Unknown MD coordinate format: psf) closed by pett
fixed: Hi Gema, Thanks for reporting this problem. You can't open a PSF …
10:48 AM Ticket #14626 (Session restore: invalid load key) closed by pett
duplicate

Feb 22, 2024:

8:08 PM Ticket #14623 (Drawing status: Attempt to retrieve context when no valid contex) closed by Tom Goddard
can't reproduce: ChimeraX OpenGL context seems to be invalid drawing status line after …
5:19 PM Ticket #14627 (Unknown MD coordinate format: psf) created by gemarcm@…
[…]
2:46 PM Ticket #7035 (Docked sequence viewer panels made main window 16000 pixels high) closed by pett
fixed: Changes made in response to #6386 prevents this scenario. If some …
2:10 PM Ticket #14550 (Could not find atom for bond) closed by pett
can't reproduce: Error is *somewhere* in the C++ layer, and likely in the …
1:01 PM Ticket #14626 (Session restore: invalid load key) created by chimerax-bug-report@…
[…]
11:25 AM Ticket #14625 (silhouettes → tiny boxes) closed by pett
nonchimerax
11:01 AM Ticket #14625 (silhouettes → tiny boxes) created by xin_gu@…
[…] Screenshot 2024-02-22 at 1.58.06 PM.png
10:57 AM Ticket #14624 (Crash in garbage collection) closed by pett
can't reproduce
10:54 AM Ticket #14622 (Crash using open/save dialog) closed by pett
can't reproduce
8:21 AM Ticket #14624 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Feb 21, 2024:

7:15 PM Ticket #14623 (Drawing status: Attempt to retrieve context when no valid contex) created by chimerax-bug-report@…
[…]
6:28 PM Ticket #14617 (Crash drawing moved marker) closed by Tom Goddard
can't reproduce: ChimeraX crashed in Apple's M3 graphics driver in glBufferSubData(). …
2:20 PM Ticket #14622 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
1:44 PM Ticket #14621 (Render by Attribute histogram: `bins` must be an integer, a string, or ...) created by goddard@…
[…]
1:06 PM ChangeLog edited by Elaine Meng
(diff)
11:46 AM Ticket #14620 (Segmentation tool freezes UI) created by pritam.mukherjee@…
[…]
10:58 AM Ticket #14619 (Crash in garbage collection) closed by pett
can't reproduce
10:24 AM Ticket #14619 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:33 AM Ticket #14618 (Cancel mouse movement callback if viewers closed) created by Zach Pearson
[…]
1:30 AM Ticket #14617 (Crash drawing moved marker) created by ranz@…
[…]

Feb 20, 2024:

6:45 PM DeveloperMeetings edited by Tom Goddard
(diff)
6:41 PM Ticket #14607 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Mac Intel graphics driver crash.
6:34 PM Ticket #14603 (Graphics crash, macOS 12.7.3, Intel Iris Pro) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
6:32 PM Ticket #14602 (Graphics crash, macOS 14.2.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
6:30 PM Ticket #14600 (Graphics crash in ISOLDE, macOS 13.3.1, AMD Radeon Pro 5500M) closed by Tom Goddard
nonchimerax: Apple AMD graphics driver crash.
11:26 AM Ticket #14616 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:59 AM Ticket #14615 (MemoryError opening mmCIF files) closed by pett
duplicate
10:56 AM Ticket #14615 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
9:38 AM Ticket #14614 (Crash while using open-file dialog) closed by pett
can't reproduce
8:12 AM Ticket #14608 (Saving movie: desktop does not exist) closed by Tom Goddard
nonchimerax: This is usually a problem caused by Microsoft OneDrive which has …
7:54 AM Ticket #14614 (Crash while using open-file dialog) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.