![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 20 months ago
Closed 20 months ago
#14656 closed defect (can't reproduce)
Crash in garbage collection
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.3.1-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00000002c4807000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028f8bb000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028e8af000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028d8a3000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028c897000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028b88b000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000028a87f000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000017fcc3000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000017ecb7000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000017dcab000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000017cc9f000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x000000017bc93000 (most recent call first):
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x0000000100a0bd40 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 1613 in remove_deleted_pointers
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 134 in __init__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 391 in __init__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 2225 in process_changes
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 2228 in changes
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/changes.py", line 36 in check_for_changes
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/__init__.py", line 77 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3005 in command_trigger
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/contextlib.py", line 144 in __exit__
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2899 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 1522 in
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio (total: 52)
Process: ChimeraX [24651]
Path: /Applications/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [24651]
User ID: 501
Date/Time: 2024-02-28 12:49:21.124 -0600
OS Version: macOS 11.3.1 (20E241)
Report Version: 12
Anonymous UUID: DBC00080-4A58-1F78-3AF8-9653666675EC
Sleep/Wake UUID: E662625F-4AB0-4496-BAD1-7EE00FD13609
Time Awake Since Boot: 350000 seconds
Time Since Wake: 1200 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x6361626563617254 -> 0x0000626563617254 (possible pointer authentication failure)
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x626563617254:
--> MALLOC_NANO (reserved) 600018000000-600020000000 [128.0M] rw-/rwx SM=NUL reserved VM address space (unallocated)
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x0000000188834e78 __pthread_kill + 8
1 libsystem_pthread.dylib 0x0000000188866b98 pthread_kill + 292
2 libsystem_c.dylib 0x0000000188746e14 raise + 32
3 org.python.python 0x0000000100cae3c4 faulthandler_fatal_error + 392
4 libsystem_platform.dylib 0x00000001888b1c44 _sigtramp + 56
5 org.python.python 0x0000000100b71b78 tupledealloc + 420
6 org.python.python 0x0000000100b40d28 dictkeys_decref + 864
7 org.python.python 0x0000000100b3c630 dict_dealloc + 148
8 org.python.python 0x0000000100b40e20 dictkeys_decref + 1112
9 org.python.python 0x0000000100b3c630 dict_dealloc + 148
10 sip.cpython-311-darwin.so 0x0000000106f7c638 sipSimpleWrapper_clear + 172
11 sip.cpython-311-darwin.so 0x0000000106f7d53c sipWrapper_clear + 20
12 org.python.python 0x0000000100caacd0 gc_collect_main + 4000
13 org.python.python 0x0000000100cabdc4 _PyObject_GC_Link + 316
14 org.python.python 0x0000000100cabe48 _PyObject_GC_New + 108
15 org.python.python 0x0000000100b475c4 PyDict_New + 152
16 org.python.python 0x0000000100c06e34 _PyEvalFramePushAndInit + 620
17 org.python.python 0x0000000100c1a6c8 _PyEval_Vector + 120
18 org.python.python 0x0000000100af1a20 _PyObject_FastCallDictTstate + 96
19 org.python.python 0x0000000100b7eb28 slot_tp_init + 180
20 org.python.python 0x0000000100b754a4 type_call + 136
21 org.python.python 0x0000000100af1700 _PyObject_MakeTpCall + 128
22 org.python.python 0x0000000100c14c88 _PyEval_EvalFrameDefault + 53048
23 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
24 org.python.python 0x0000000100af1a20 _PyObject_FastCallDictTstate + 96
25 org.python.python 0x0000000100b7eb28 slot_tp_init + 180
26 org.python.python 0x0000000100b754a4 type_call + 136
27 org.python.python 0x0000000100af1700 _PyObject_MakeTpCall + 128
28 org.python.python 0x0000000100c14c88 _PyEval_EvalFrameDefault + 53048
29 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
30 org.python.python 0x0000000100b01d0c property_descr_get + 124
31 org.python.python 0x0000000100b5c708 _PyObject_GenericGetAttrWithDict + 308
32 org.python.python 0x0000000100c0ebf8 _PyEval_EvalFrameDefault + 28328
33 org.python.python 0x0000000100b10054 gen_send_ex2 + 204
34 org.python.python 0x0000000100b0f760 gen_iternext + 36
35 org.python.python 0x0000000100c020c0 builtin_next + 72
36 org.python.python 0x0000000100c16754 _PyEval_EvalFrameDefault + 59908
37 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
38 org.python.python 0x0000000100af5a44 method_vectorcall + 272
39 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
40 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
41 QtCore.abi3.so 0x0000000107b465b8 PyQtSlot::call(_object*, _object*) const + 68
42 QtCore.abi3.so 0x0000000107b46440 PyQtSlot::invoke(void**, _object*, void*, bool) const + 292
43 QtCore.abi3.so 0x0000000107b4736c PyQtSlotProxy::unislot(void**) + 92
44 QtCore.abi3.so 0x0000000107b472dc PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 68
45 QtCore 0x00000001168ae5dc 0x116800000 + 714204
46 QtWidgets 0x000000012621b360 0x126000000 + 2208608
47 QtCore 0x00000001168ae86c 0x116800000 + 714860
48 QtGui 0x00000001266472d0 QPlatformColorDialogHelper::currentColorChanged(QColor const&) + 52
49 libqcocoa.dylib 0x00000001350ae5e4 0x13509c000 + 75236
50 com.apple.CoreFoundation 0x000000018895a494 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 28
51 com.apple.CoreFoundation 0x00000001889fc3cc ___CFXRegistrationPost_block_invoke + 52
52 com.apple.CoreFoundation 0x00000001889fc338 _CFXRegistrationPost + 440
53 com.apple.CoreFoundation 0x0000000188928c60 _CFXNotificationPost + 720
54 com.apple.Foundation 0x00000001896afab0 -[NSNotificationCenter postNotificationName:object:userInfo:] + 64
55 com.apple.AppKit 0x000000018b6357b0 -[NSColorPanel _withColorSettingDisabled:] + 64
56 com.apple.AppKit 0x000000018b6358c8 -[NSColorPanel _forceSendAction:notification:firstResponder:] + 116
57 com.apple.AppKit 0x000000018b65971c -[NSColorPickerWheel setColor:] + 340
58 com.apple.AppKit 0x000000018b65ae68 -[NSColorPickerWheelView mouseDown:] + 876
59 com.apple.AppKit 0x000000018b35f840 -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 4384
60 com.apple.AppKit 0x000000018b2d02d4 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2444
61 com.apple.AppKit 0x000000018b2cf6dc -[NSWindow(NSEventRouting) sendEvent:] + 352
62 com.apple.AppKit 0x000000018b2ce5b4 -[NSApplication(NSEvent) sendEvent:] + 2568
63 libqcocoa.dylib 0x00000001350a6ca4 0x13509c000 + 44196
64 com.apple.AppKit 0x000000018b59bcc8 -[NSApplication _handleEvent:] + 76
65 com.apple.AppKit 0x000000018b13dd40 -[NSApplication run] + 636
66 libqcocoa.dylib 0x00000001350b322c 0x13509c000 + 94764
67 QtCore 0x000000011686f39c QEventLoop::exec(QFlags) + 544
68 QtCore 0x00000001168663f4 QCoreApplication::exec() + 128
69 QtWidgets.abi3.so 0x0000000117a622b4 meth_QApplication_exec(_object*, _object*) + 96
70 org.python.python 0x0000000100b55a64 cfunction_call + 96
71 org.python.python 0x0000000100af1700 _PyObject_MakeTpCall + 128
72 org.python.python 0x0000000100c14c88 _PyEval_EvalFrameDefault + 53048
73 org.python.python 0x0000000100c06ac4 PyEval_EvalCode + 276
74 org.python.python 0x0000000100c01320 builtin_exec + 428
75 org.python.python 0x0000000100b56450 cfunction_vectorcall_FASTCALL_KEYWORDS + 80
76 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
77 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
78 org.python.python 0x0000000100ca75e0 pymain_run_module + 256
79 org.python.python 0x0000000100ca7080 Py_RunMain + 1784
80 org.python.python 0x0000000100ca8230 pymain_main + 52
81 org.python.python 0x0000000100ca81f0 Py_Main + 36
82 edu.ucsf.cgl.ChimeraX 0x00000001007f3d54 main + 128
83 libdyld.dylib 0x0000000188884420 start + 4
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x0000000188837ef8 kevent64 + 8
1 QtWebEngineCore 0x00000001536197c8 0x150000000 + 56727496
2 QtWebEngineCore 0x00000001536196f8 0x150000000 + 56727288
3 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
4 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
5 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
6 QtWebEngineCore 0x00000001535aa1a8 0x150000000 + 56271272
7 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
8 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
9 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
10 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535b566c 0x150000000 + 56317548
4 QtWebEngineCore 0x00000001535b60f4 0x150000000 + 56320244
5 QtWebEngineCore 0x00000001535b5c9c 0x150000000 + 56319132
6 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
7 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x0000000188837ef8 kevent64 + 8
1 QtWebEngineCore 0x00000001536197c8 0x150000000 + 56727496
2 QtWebEngineCore 0x00000001536196f8 0x150000000 + 56727288
3 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
4 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
5 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
6 QtWebEngineCore 0x00000001526b5c04 0x150000000 + 40590340
7 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
8 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
9 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
10 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 5:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 QtWebEngineCore 0x00000001535e6048 0x150000000 + 56516680
3 QtWebEngineCore 0x000000015519afe4 0x150000000 + 85569508
4 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
5 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
6 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 6:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 7:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x0000000188837ef8 kevent64 + 8
1 QtWebEngineCore 0x00000001536197c8 0x150000000 + 56727496
2 QtWebEngineCore 0x00000001536196f8 0x150000000 + 56727288
3 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
4 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
5 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
6 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
7 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
8 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
9 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 9:: VizCompositorThread
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 10:: NetworkService
0 libsystem_kernel.dylib 0x0000000188837ef8 kevent64 + 8
1 QtWebEngineCore 0x00000001536197c8 0x150000000 + 56727496
2 QtWebEngineCore 0x00000001536196f8 0x150000000 + 56727288
3 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
4 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
5 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
6 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
7 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
8 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
9 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535b566c 0x150000000 + 56317548
4 QtWebEngineCore 0x00000001535b60f4 0x150000000 + 56320244
5 QtWebEngineCore 0x00000001535b5d78 0x150000000 + 56319352
6 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
7 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 14:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 15:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 16:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 17:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 18:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 19:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 20:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 21:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 22:
0 libsystem_kernel.dylib 0x0000000188834f90 poll + 8
1 select.cpython-311-darwin.so 0x00000001016e954c select_poll_poll + 148
2 org.python.python 0x0000000100b02d30 method_vectorcall_FASTCALL + 100
3 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
4 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
5 org.python.python 0x0000000100af59d8 method_vectorcall + 164
6 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
9 org.python.python 0x0000000100d17878 thread_run + 200
10 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
11 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
12 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 23:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100b2152c calliter_iternext + 88
7 org.python.python 0x0000000100c13628 _PyEval_EvalFrameDefault + 47320
8 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
9 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
10 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
11 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
12 org.python.python 0x0000000100d17878 thread_run + 200
13 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
14 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
15 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 24:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e4c PyThread_acquire_lock_timed + 412
3 _queue.cpython-311-darwin.so 0x00000001378933cc _queue_SimpleQueue_get_impl + 220
4 _queue.cpython-311-darwin.so 0x0000000137893048 _queue_SimpleQueue_get + 224
5 org.python.python 0x0000000100b568d4 cfunction_vectorcall_FASTCALL_KEYWORDS_METHOD + 100
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100c177d8 _PyEval_EvalFrameDefault + 64136
9 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
10 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
11 org.python.python 0x0000000100d17878 thread_run + 200
12 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
13 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
14 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 25:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 com.apple.CoreFoundation 0x0000000188965e9c __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x0000000188964368 __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x0000000188963734 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x000000018b2cc2c4 _NSEventThread + 196
6 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
7 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 26:: MemoryInfra
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 27:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535b566c 0x150000000 + 56317548
4 QtWebEngineCore 0x00000001535b5e84 0x150000000 + 56319620
5 QtWebEngineCore 0x00000001535b5cc8 0x150000000 + 56319176
6 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
7 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 28:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 29:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 30:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 31:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 32:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 33:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 34:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101df825c blas_thread_server + 360
3 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
4 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 35:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535ed3b0 0x150000000 + 56546224
4 QtWebEngineCore 0x00000001535375a0 0x150000000 + 55801248
5 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
6 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
7 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
8 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
9 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
10 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
11 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 36:: CacheThread_BlockFile
0 libsystem_kernel.dylib 0x0000000188837ef8 kevent64 + 8
1 QtWebEngineCore 0x00000001536197c8 0x150000000 + 56727496
2 QtWebEngineCore 0x00000001536196f8 0x150000000 + 56727288
3 QtWebEngineCore 0x00000001535a0f6c 0x150000000 + 56233836
4 QtWebEngineCore 0x00000001535644bc 0x150000000 + 55985340
5 QtWebEngineCore 0x00000001535c0d88 0x150000000 + 56364424
6 QtWebEngineCore 0x00000001535c0f10 0x150000000 + 56364816
7 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
8 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
9 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 37:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535b566c 0x150000000 + 56317548
4 QtWebEngineCore 0x00000001535b60f4 0x150000000 + 56320244
5 QtWebEngineCore 0x00000001535b5d20 0x150000000 + 56319264
6 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
7 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 38:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000018882ce54 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018882d204 mach_msg + 76
2 QtWebEngineCore 0x00000001535ed5e4 0x150000000 + 56546788
3 QtWebEngineCore 0x00000001535b566c 0x150000000 + 56317548
4 QtWebEngineCore 0x00000001535b60f4 0x150000000 + 56320244
5 QtWebEngineCore 0x00000001535b5d20 0x150000000 + 56319264
6 QtWebEngineCore 0x00000001535e6be4 0x150000000 + 56519652
7 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
8 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 39:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 40:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 41:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 42:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 43:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 44:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 45:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 46:
0 libsystem_pthread.dylib 0x0000000188861d28 start_wqthread + 0
Thread 47:
0 libsystem_kernel.dylib 0x00000001888305c8 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x0000000188867508 _pthread_cond_wait + 1248
2 org.python.python 0x0000000100c93e00 PyThread_acquire_lock_timed + 336
3 org.python.python 0x0000000100d16a10 acquire_timed + 312
4 org.python.python 0x0000000100d16c58 lock_PyThread_acquire_lock + 56
5 org.python.python 0x0000000100b029f4 method_vectorcall_VARARGS_KEYWORDS + 148
6 org.python.python 0x0000000100c14ba0 _PyEval_EvalFrameDefault + 52816
7 org.python.python 0x0000000100c1a6ec _PyEval_Vector + 156
8 org.python.python 0x0000000100af5ab8 method_vectorcall + 388
9 org.python.python 0x0000000100d17878 thread_run + 200
10 org.python.python 0x0000000100c93a44 pythread_wrapper + 48
11 libsystem_pthread.dylib 0x0000000188866fd4 _pthread_start + 320
12 libsystem_pthread.dylib 0x0000000188861d3c thread_start + 8
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x0000000108047a98
x4: 0x0000000000000069 x5: 0x0000000000000075 x6: 0x0000000000004400 x7: 0x0000000000001105
x8: 0xec2db6daa9c33a8f x9: 0xec2db6dba96387cf x10: 0x0000000000001bba x11: 0x00000001ff4dfb46
x12: 0x00000001ff4dfb46 x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x00000001f7016e90 x18: 0x00000002abf3c5ec x19: 0x000000000000000b
x20: 0x0000000100a0bd40 x21: 0x0000000000000103 x22: 0x0000000100a0be20 x23: 0x0000000000000001
x24: 0x0000000100e74630 x25: 0x0000000165025bd0 x26: 0x000000016f60c7b0 x27: 0x0000000000001647
x28: 0x0000000100f72b58 fp: 0x0000000108047ae0 lr: 0x0000000188866b98
sp: 0x0000000108047ac0 pc: 0x0000000188834e78 cpsr: 0x40000000
far: 0x0000000100c76ff4 esr: 0x56000080
Binary Images:
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0x101688000 - 0x10168ffff +binascii.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/binascii.cpython-311-darwin.so
0x1016a0000 - 0x1016a7fff +_struct.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_struct.cpython-311-darwin.so
0x1016bc000 - 0x1016bffff +fcntl.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/fcntl.cpython-311-darwin.so
0x1016d0000 - 0x1016d3fff +_posixsubprocess.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_posixsubprocess.cpython-311-darwin.so
0x1016e4000 - 0x1016ebfff +select.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/select.cpython-311-darwin.so
0x1017fc000 - 0x1017fffff +_arrays.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/_arrays.cpython-311-darwin.so
0x101810000 - 0x10187ffff +libarrays.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/arrays/lib/libarrays.dylib
0x1018ac000 - 0x1018b3fff +_json.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_json.cpython-311-darwin.so
0x1018c4000 - 0x101b4ffff +_multiarray_umath.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so
0x101c8c000 - 0x10307ffff +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x103268000 - 0x1035c3fff +libgfortran.5.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgfortran.5.dylib
0x1035f8000 - 0x103643fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x103654000 - 0x103663fff +libgcc_s.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/.dylibs/libgcc_s.1.1.dylib
0x105678000 - 0x10568ffff +_pickle.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_pickle.cpython-311-darwin.so
0x1056a4000 - 0x1056a7fff +_contextvars.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_contextvars.cpython-311-darwin.so
0x1056b8000 - 0x1056c7fff +_multiarray_tests.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_tests.cpython-311-darwin.so
0x1056e4000 - 0x1056ebfff +_hashlib.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_hashlib.cpython-311-darwin.so
0x106200000 - 0x106213fff +_ctypes.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_ctypes.cpython-311-darwin.so
0x106230000 - 0x106247fff +_umath_linalg.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/linalg/_umath_linalg.cpython-311-darwin.so
0x106264000 - 0x106273fff +_pocketfft_internal.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/fft/_pocketfft_internal.cpython-311-darwin.so
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0x1062c0000 - 0x1062c7fff +_blake2.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_blake2.cpython-311-darwin.so
0x1062d8000 - 0x1062e7fff +_mt19937.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_mt19937.cpython-311-darwin.so
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0x106708000 - 0x1068a3fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/libcrypto.1.1.dylib
0x106940000 - 0x10698bfff +_bounded_integers.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_bounded_integers.cpython-311-darwin.so
0x1069a4000 - 0x1069affff +_philox.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_philox.cpython-311-darwin.so
0x1069c4000 - 0x1069d3fff +_pcg64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_pcg64.cpython-311-darwin.so
0x1069e8000 - 0x1069effff +_sfc64.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_sfc64.cpython-311-darwin.so
0x106a04000 - 0x106a8bfff +_generator.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/random/_generator.cpython-311-darwin.so
0x106be0000 - 0x106be3fff +_opcode.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_opcode.cpython-311-darwin.so
0x106cf4000 - 0x106d0ffff +_geometry.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/geometry/_geometry.cpython-311-darwin.so
0x106f78000 - 0x106f8bfff +sip.cpython-311-darwin.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/sip.cpython-311-darwin.so
0x106fa8000 - 0x106fb7fff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWebEngineWidgets.abi3.so
0x106fd0000 - 0x106fe3fff +QtWebEngineWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebEngineWidgets.framework/Versions/A/QtWebEngineWidgets
0x107a00000 - 0x107b93fff +QtCore.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtCore.abi3.so
0x107ea0000 - 0x107f1ffff +QtDBus (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtDBus.framework/Versions/A/QtDBus
0x107f44000 - 0x107f8bfff +QtPrintSupport (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtPrintSupport.framework/Versions/A/QtPrintSupport
0x107fbc000 - 0x107fcffff +QtQuickWidgets (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtQuickWidgets.framework/Versions/A/QtQuickWidgets
0x116800000 - 0x116c5ffff +QtCore (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore
0x116e1c000 - 0x116e7ffff +QtOpenGL (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtOpenGL.framework/Versions/A/QtOpenGL
0x116eb4000 - 0x116ee3fff +QtWebChannel (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/Qt6/lib/QtWebChannel.framework/Versions/A/QtWebChannel
0x117800000 - 0x117ae7fff +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/PyQt6/QtWidgets.abi3.so
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0x1acdab000 - 0x1acdaefff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib
0x1aea52000 - 0x1aea8cfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x1af2d5000 - 0x1af2f0fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x1b82c9000 - 0x1b82f6fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x1b82f7000 - 0x1b8311fff com.apple.shortcut (2.16 - 117) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x1b8312000 - 0x1b83b0fff com.apple.Symbolication (12.5 - 64544.66.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x1b8587000 - 0x1b858afff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib
0x1baabc000 - 0x1baaf6fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x1bc139000 - 0x1bc13cfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x1c8513000 - 0x1c8517fff libmetal_timestamp.dylib (31001.184.2) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x1ca765000 - 0x1ca76bfff libCoreFSCache.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x1ca76c000 - 0x1ca771fff libCoreVMClient.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x1ca772000 - 0x1ca781fff com.apple.opengl (18.5.8 - 18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x1ca782000 - 0x1ca784fff libCVMSPluginSupport.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x1ca785000 - 0x1ca78dfff libGFXShared.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x1ca78e000 - 0x1ca7c6fff libGLImage.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x1ca7c7000 - 0x1ca7fffff libGLU.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x1ca800000 - 0x1ca96cfff libGLProgrammability.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x1ca96d000 - 0x1ca977fff libGL.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x1ca978000 - 0x1caae2fff GLEngine (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x1caae3000 - 0x1cab0afff GLRendererFloat (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x1cab0b000 - 0x1cab6afff com.apple.opencl (4.5 - 4.5) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x1cb5e4000 - 0x1cb5ebfff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x1cb5ec000 - 0x1cb6d2fff com.apple.audio.AVFAudio (1.0 - 477.84) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x1cdbac000 - 0x1cdbb7fff com.apple.CMImaging (1.0 - 81.37) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x1d3d43000 - 0x1d3d4efff com.apple.SymptomAnalytics (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x1d3f68000 - 0x1d3f81fff com.apple.SymptomPresentationFeed (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x1dbb4c000 - 0x1dbb53fff libRosetta.dylib (203.42) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=2.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 8752K 52
CG raster data 7008K 10
CoreAnimation 17.3M 100
CoreGraphics 32K 2
CoreUI image data 5168K 38
Foundation 32K 2
Kernel Alloc Once 32K 1
MALLOC 761.9M 177
MALLOC guard page 192K 10
MALLOC_MEDIUM (reserved) 840.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 96K 4
OpenGL GLSL 384K 4
STACK GUARD 752K 47
Stack 361.2M 48
Stack Guard 56.0M 1
VM_ALLOCATE 226.9M 207
VM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)
__AUTH 1028K 267
__AUTH_CONST 15.2M 458
__DATA 19.7M 601
__DATA_CONST 25.6M 602
__DATA_DIRTY 1798K 214
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 519.3M 153
__OBJC_CONST 3306K 257
__OBJC_RO 74.9M 1
__OBJC_RW 2576K 1
__TEXT 569.3M 623
__UNICODE 588K 1
mapped file 282.3M 71
shared memory 3280K 23
=========== ======= =======
TOTAL 4.0G 3999
TOTAL, minus reserved VM space 2.9G 3999
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1NFI format mmcif fromDatabase pdb
1nfi title:
I-κ-B-α/NF-κ-B complex [more info...]
Chain information for 1nfi #1
---
Chain | Description | UniProt
A C | NF-KAPPA-B P65 | TF65_HUMAN 20-320
B D | NF-KAPPA-B P50 | NFKB1_HUMAN 249-355
E F | I-KAPPA-B-ALPHA | IKBA_HUMAN 70-282
1nfi mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> select add #1
9890 atoms, 10033 bonds, 1307 residues, 1 model selected
> style sel stick
Changed 9890 atom styles
> style sel sphere
Changed 9890 atom styles
> style sel stick
Changed 9890 atom styles
> style sel ball
Changed 9890 atom styles
> show sel cartoons
> hide sel atoms
> select clear
> close
> close #
Expected a models specifier or a keyword
> ui tool show AlphaFold
> alphafold predict
> GGGVATPIGLVAGGANTATSSNSSKWMLSPTLEVSSEEKTSLISKLKTDSECGIPGAVGGAGEGVSGYVKLPVEDRNKYEKLRSKDQPTSDDSDSEASEF,VNAAQTPATPPASPPLPLPPRTPSPVSDQRLPPLPPKPQRNSQDLSAVSDSISVSRSRNGSLSSNRTTPSPIIIMRTPDQSPTKRQPTPSASPKKRQGFFSRFFSRRRSKTDDEESLTPGGSPNKQLPGGSKATTPTGSREPSVAHFSLGDPNRSSTRSMQPLGKSEGRNGKPVGRSSSSVSGKRPAH
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
AlphaFold prediction finished
Results in /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1
> open
> /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select /B
1402 atoms, 1439 bonds, 188 residues, 1 model selected
> alphafold pae #1 file
> /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1/best_model_pae.json
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:36-50,73-85
231 atoms, 230 bonds, 28 residues, 1 model selected
> alphafold contacts /A toResidues /B
> close
> alphafold predict
> LPVEDRNKYEKLRSKDQPTSDDSDSEASEFFQQDSDEGGGGIFRQMQMVTSNLPETIHKIQQVAYHKVDKTAHLPIVKKLRDKTKKPTTAAHQAAQQLNL,VNAAQTPATPPASPPLPLPPRTPSPVSDQRLPPLPPKPQRNSQDLSAVSDSISVSRSRNGSLSSNRTTPSPIIIMRTPDQSPTKRQPTPSASPKKRQGFFSRFFSRRRSKTDDEESLTPGGSPNKQLPGGSKATTPTGSREPSVAHFSLGDPNRSSTRSMQPLGKSEGRNGKPVGRSSSSVSGKRPAH
Running AlphaFold prediction
AlphaFold prediction finished
Results in /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1
> open
> /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available
B | No description available
> alphafold pae #1 file
> /Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/prediction_1/best_model_pae.json
> alphafold contacts /A toResidues /B
> close
> open "/Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/Whole cact - RHR
> Dif/best_model.pdb"
Chain information for best_model.pdb #1
---
Chain | Description
A | No description available
B | No description available
> color bfactor palette alphafold
6129 atoms, 795 residues, atom bfactor range 13.3 to 98.7
> ui tool show "AlphaFold Error Plot"
> alphafold pae #1 file "/Users/hvygoodwin/Downloads/ChimeraX/AlphaFold/Whole
> cact - RHR Dif/best_model_pae.json"
> color #1/B:212-439 lime
> color #1/B:108-108 lime
> color #1/B:201-201 magenta
> color #1/A:4-171 lime
> color #1/B:84-84 lime
> color #1/A:65-71 magenta
> color #1/A:172-281 lime
> color #1/A:30-163 lime
> color #1/A:214-295/B:1-16 magenta
> color #1/A:170-287 lime
> color #1/A:288-288 lime
> color #1/A:163-163 magenta
> color #1/A:167-292 lime
> color bfactor palette alphafold
6129 atoms, 795 residues, atom bfactor range 13.3 to 98.7
> select /A
2362 atoms, 2412 bonds, 295 residues, 1 model selected
> color sel orange
> color sel #e7ffe4ff
> color sel #e8ffe4ff
> color sel #f8ffe5ff
> color sel #fff8ddff
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> color sel #ff96caff
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> color sel #f7d3ffff
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> color sel #fadaffff
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> color sel #e2a1ffff
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> color sel #d16bffff
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> color sel #ce5effff
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> color sel #ffe9dfff
> color sel #ffe8e0ff
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> color sel #ffe5e2ff
> color sel #ffe4e3ff
> color sel #ffe4e4ff
> color sel #ffe4e6ff
> color sel #ffe3e7ff
> color sel #ffe2e6ff
> color sel #ffe1e5ff
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> color sel #ffdddcff
> color sel #ffdedcff
Exception ignored in tp_clear of:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/molarray.py", line 1613, in remove_deleted_pointers
weakref.finalize(array, pointer_array_freed, id(array))
TypeError: NoneType takes no arguments
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.5.9
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 6723.101.4
OS Loader Version: 6723.101.4
Software:
System Software Overview:
System Version: macOS 11.3.1 (20E241)
Kernel Version: Darwin 20.4.0
Time since boot: 4 days 22:42
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 7
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 20 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 20 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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