wrapped C/C++ object of type MultiColorButton has been deleted

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/albertoestevez/Documents/SLC_5475_Krios_240205_dataset_maps/8jzx.pdb
> /Users/albertoestevez/Documents/SLC_5475_Krios_240205_dataset_maps/emd_36754.mrc

8jzx.pdb title:  
SLC15A4 inhibitor complex [more info...]  
  
Chain information for 8jzx.pdb #1  
---  
Chain | Description | UniProt  
A B | lysosomal transporter,ALFA tag,lysosomal transporter | S15A4_HUMAN  
  
Non-standard residues in 8jzx.pdb #1  
---  
CLR — cholesterol  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
Q09 —
2-(4-ethoxyphenyl)-N-[3-[(2R)-2-methylpiperidin-1-yl]propyl]quinoline-4-carboxamide  
  
Opened emd_36754.mrc as #2, grid size 320,320,320, pixel 0.843, shown at level
0.157, step 2, values float32  

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.4427,-0.14532,-0.88482,254.78,-0.4487,0.81844,-0.35892,160.61,0.77633,0.55591,0.29712,-109.61

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.4427,-0.14532,-0.88482,206.53,-0.4487,0.81844,-0.35892,147.57,0.77633,0.55591,0.29712,-130.48

> view matrix models
> #1,0.4427,-0.14532,-0.88482,207.41,-0.4487,0.81844,-0.35892,141.79,0.77633,0.55591,0.29712,-129.52

> select add #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> fitmap #1 inMap #2

Fit molecule 8jzx.pdb (#1) to map emd_36754.mrc (#2) using 7108 atoms  
average map value = 0.8295, steps = 100  
shifted from previous position = 2.49  
rotated from previous position = 12.3 degrees  
atoms outside contour = 497, contour level = 0.15719  
  
Position of 8jzx.pdb (#1) relative to emd_36754.mrc (#2) coordinates:  
Matrix rotation and translation  
0.35605416 0.04390964 -0.93343311 201.87740584  
-0.52554254 0.83536181 -0.16116974 120.48279565  
0.77267747 0.54794397 0.32051043 -132.81652028  
Axis 0.36677542 -0.88245286 -0.29453818  
Axis point 222.26689089 0.00000000 60.25047552  
Rotation angle (degrees) 75.16933312  
Shift along axis 6.84281860  
  

> hide #!1 models

> hide #!2 models

> select subtract #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> select add #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> select subtract #1

2 models selected  

> select subtract #2

Nothing selected  

> show #!2 models

> show #!1 models

> set bgColor white

> open
> /Users/albertoestevez/Downloads/cryosparc_P25_J301_008_volume_map_sharp.mrc

Opened cryosparc_P25_J301_008_volume_map_sharp.mrc as #3, grid size
388,388,388, pixel 0.819, shown at level 0.0965, step 2, values float32  

> select add #3

2 models selected  

> view matrix models #3,1,0,0,-17.443,0,1,0,0.37288,0,0,1,-30.295

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.96003,0.062483,-0.27283,22.784,0.25697,0.18951,0.94765,-63.843,0.11092,-0.97989,0.16588,241.68

> volume #3 step 1

> volume #3 level 0.2875

> hide #!2 models

> view matrix models
> #3,0.98073,0.021539,0.19416,-50.295,-0.19362,0.23909,0.9515,-0.7613,-0.025927,-0.97076,0.23865,250.08

> surface dust #3 size 8.19

> view matrix models
> #3,-0.46466,-0.20531,-0.86136,379.72,0.88385,-0.16677,-0.43704,108.75,-0.05392,-0.96438,0.25895,250.35

> view matrix models
> #3,0.0237,0.11016,0.99363,-36.818,-0.99969,0.01066,0.022663,308.21,-0.0080954,-0.99386,0.11038,270.89

> view matrix models
> #3,0.12963,0.14684,0.98063,-57.449,-0.98814,-0.063007,0.14006,299.8,0.082353,-0.98715,0.13693,251.32

> view matrix models
> #3,0.0094355,0.12016,0.99271,-35.997,-0.9986,-0.050615,0.015618,318.87,0.052123,-0.99146,0.11951,259.52

> view matrix models
> #3,0.097248,0.091862,0.99101,-45.187,-0.99446,0.048766,0.093067,290.37,-0.039778,-0.99458,0.096096,278.26

> view matrix models
> #3,0.09723,0.04707,0.99415,-38.557,-0.99485,0.033292,0.095723,292.47,-0.028591,-0.99834,0.050064,284.25

> ui mousemode right "translate selected models"

> view matrix models
> #3,0.09723,0.04707,0.99415,-55.581,-0.99485,0.033292,0.095723,286.35,-0.028591,-0.99834,0.050064,289.97

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.11204,0.11116,0.98747,-67.075,-0.99366,0.021489,0.11032,285.76,-0.0089566,-0.99357,0.11286,276.32

> view matrix models
> #3,0.12025,0.1509,0.98121,-73.719,-0.99272,0.025397,0.11776,283.83,-0.0071504,-0.98822,0.15285,268.95

> view matrix models
> #3,0.049478,0.16547,0.98497,-65.377,-0.99868,0.021967,0.046476,296.42,-0.013946,-0.98597,0.16634,267.57

> ui mousemode right "translate selected models"

> view matrix models
> #3,0.049478,0.16547,0.98497,-63.16,-0.99868,0.021967,0.046476,282.4,-0.013946,-0.98597,0.16634,270.39

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> fitmap #1 inMap #3

Fit molecule 8jzx.pdb (#1) to map cryosparc_P25_J301_008_volume_map_sharp.mrc
(#3) using 7108 atoms  
average map value = 0.1215, steps = 228  
shifted from previous position = 4.26  
rotated from previous position = 6.86 degrees  
atoms outside contour = 5434, contour level = 0.28749  
  
Position of 8jzx.pdb (#1) relative to
cryosparc_P25_J301_008_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.58128529 -0.81344579 0.02033140 182.91428880  
-0.68781122 -0.50455090 -0.52186599 436.47768674  
0.43476792 0.28936885 -0.85278516 165.56067131  
Axis 0.88217125 -0.45067589 0.13662037  
Axis point 0.00000000 241.86930742 128.07161861  
Rotation angle (degrees) 152.62615744  
Shift along axis -12.72928028  
  

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.30904,0.14348,-0.94017,192.08,-0.56095,0.82579,-0.058365,110.81,0.76801,0.54542,0.33568,-131.89,#3,0.043814,0.20569,0.97764,-67.576,-0.99899,-0.00036714,0.044848,286.28,0.0095837,-0.97862,0.20547,259.49

> select subtract #1

2 models selected  

> select subtract #3

Nothing selected  

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> view matrix models
> #1,0.17114,0.081033,-0.98191,231.77,-0.49938,0.86624,-0.015551,87.418,0.84931,0.49301,0.18872,-115.02

> ui mousemode right "translate selected models"

> view matrix models
> #1,0.17114,0.081033,-0.98191,236.66,-0.49938,0.86624,-0.015551,85.801,0.84931,0.49301,0.18872,-113.77

> ui mousemode right "rotate selected models"

> view matrix models
> #1,0.17842,0.081936,-0.98054,235.06,-0.58889,0.80724,-0.0397,113.95,0.78827,0.58451,0.19228,-117.92

> select add #3

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> fitmap #1 inMap #3

Fit molecule 8jzx.pdb (#1) to map cryosparc_P25_J301_008_volume_map_sharp.mrc
(#3) using 7108 atoms  
average map value = 0.3704, steps = 100  
shifted from previous position = 4.45  
rotated from previous position = 10.8 degrees  
atoms outside contour = 3785, contour level = 0.28749  
  
Position of 8jzx.pdb (#1) relative to
cryosparc_P25_J301_008_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.63243999 -0.75670313 0.16558998 141.68295704  
-0.69314163 -0.64827299 -0.31511398 427.22213961  
0.34579524 0.08451337 -0.93449620 233.24337965  
Axis 0.90216915 -0.40681808 0.14349174  
Axis point 0.00000000 230.94904384 131.58822227  
Rotation angle (degrees) 167.20394314  
Shift along axis -12.51119665  
  

> show #!2 models

> select add #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 6 models selected  

> select subtract #1

4 models selected  

> volume #2 step 1

> volume #2 level 0.3455

> fitmap #2 inMap #3

Fit map emd_36754.mrc in map cryosparc_P25_J301_008_volume_map_sharp.mrc using
72591 points  
correlation = 0.6508, correlation about mean = 0.3568, overlap = 1.828e+04  
steps = 144, shift = 5.81, angle = 13 degrees  
  
Position of emd_36754.mrc (#2) relative to
cryosparc_P25_J301_008_volume_map_sharp.mrc (#3) coordinates:  
Matrix rotation and translation  
0.03739891 -0.99117904 0.12714334 270.44875963  
0.01881226 -0.12651147 -0.99178674 306.93238007  
0.99912333 0.03948360 0.01391493 28.52670806  
Axis 0.61152124 -0.51706547 0.59890322  
Axis point 0.00000000 261.39492821 24.96146492  
Rotation angle (degrees) 122.52032908  
Shift along axis 23.76576356  
  

> surface dust #2 size 8.43

> surface dust #3 size 8.19

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 6 models selected  

> select subtract #3

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> fitmap #1 inMap #2

Fit molecule 8jzx.pdb (#1) to map emd_36754.mrc (#2) using 7108 atoms  
average map value = 0.8295, steps = 48  
shifted from previous position = 0.114  
rotated from previous position = 0.0194 degrees  
atoms outside contour = 1003, contour level = 0.34545  
  
Position of 8jzx.pdb (#1) relative to emd_36754.mrc (#2) coordinates:  
Matrix rotation and translation  
0.35583970 0.04377218 -0.93352135 201.96112810  
-0.52555970 0.83535217 -0.16116377 120.48753134  
0.77276459 0.54796967 0.32025636 -132.79163999  
Axis 0.36676161 -0.88248580 -0.29445668  
Axis point 222.26138388 0.00000000 60.28666647  
Rotation angle (degrees) 75.18350369  
Shift along axis 6.84444012  
  

> select subtract #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> select subtract #1

Nothing selected  

> color #2 #b2b2b287 models

> hide #!2 models

> show #!2 models

> hide #!3 models

> ui tool show "Side View"

> show #!3 models

> hide #!2 models

> color #3 #ffffb2d3 models

> volume #3 level 0.6808

> select /A:175

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /A:176

15 atoms, 13 bonds, 2 residues, 1 model selected  

> select add /A:177

22 atoms, 20 bonds, 3 residues, 1 model selected  

> show sel atoms

> volume #3 level 0.5234

> show #!2 models

> hide #!3 models

> color #2 #b2e2b287 models

> color #2 #b2e2f487 models

> color #2 #b2e2ff87 models

> show #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!3 models

> show #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> select /A

3554 atoms, 3648 bonds, 4 pseudobonds, 459 residues, 2 models selected  

> show sel atoms

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> select subtract #1

Nothing selected  

> color #3 #ffffa7d3 models

> color #3 #ffffa2d3 models

> color #3 #ffffa3d3 models

> color #3 #ffffa3bd models

> volume #3 level 0.4645

> view

> open
> "/Users/albertoestevez/Downloads/cryosparc_P25_J301_009_volume_map_sharp
> (1).mrc"

Opened cryosparc_P25_J301_009_volume_map_sharp (1).mrc as #4, grid size
388,388,388, pixel 0.819, shown at level 0.0988, step 2, values float32  

> select add #4

2 models selected  

> select subtract #4

Nothing selected  

> select add #4

2 models selected  

> view matrix models
> #4,0.99001,-0.072502,-0.12089,32.127,0.055115,-0.59024,0.80534,117.16,-0.12974,-0.80397,-0.58035,397.01

> volume #4 step 1

> volume #4 level 0.3547

> view matrix models
> #4,0.96126,0.072443,0.26595,-49.699,-0.27454,0.16555,0.94722,26.216,0.024592,-0.98354,0.17902,276.63

> view matrix models
> #4,0.97177,0.2259,-0.06799,-21.047,0.019725,0.20939,0.97763,-32.479,0.23508,-0.95138,0.19902,234.8

> view matrix models
> #4,0.97731,0.20047,-0.068461,-17.808,0.02701,0.20262,0.97889,-32.766,0.21011,-0.95852,0.1926,240.96

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.97731,0.20047,-0.068461,-67.789,0.02701,0.20262,0.97889,-46,0.21011,-0.95852,0.1926,226.59

> ui mousemode right "rotate selected models"

> view matrix models
> #4,0.32273,0.10733,0.94038,-114.26,-0.94018,0.1509,0.30544,226.19,-0.10912,-0.98271,0.1496,288.19

> view matrix models
> #4,0.31246,0.18015,0.93269,-122.94,-0.94499,0.15896,0.28588,228.87,-0.09676,-0.97071,0.21991,272.8

> view matrix models
> #4,0.31901,0.19568,0.92733,-125.57,-0.94775,0.063362,0.31267,240.11,0.0024265,-0.97862,0.20567,260.64

> view matrix models
> #4,0.13097,0.17657,0.97554,-100.55,-0.99112,0.046048,0.12473,280.54,-0.022899,-0.98321,0.18103,269.43

> ui mousemode right "translate selected models"

> view matrix models
> #4,0.13097,0.17657,0.97554,-96.362,-0.99112,0.046048,0.12473,262.14,-0.022899,-0.98321,0.18103,267.61

> view matrix models
> #4,0.13097,0.17657,0.97554,-76.573,-0.99112,0.046048,0.12473,261.55,-0.022899,-0.98321,0.18103,268.69

> view matrix models
> #4,0.13097,0.17657,0.97554,-77.926,-0.99112,0.046048,0.12473,264.98,-0.022899,-0.98321,0.18103,268.11

> select add #3

4 models selected  

> surface dust #3 size 8.19

> surface dust #4 size 8.19

> fitmap #3 inMap #4

Fit map cryosparc_P25_J301_008_volume_map_sharp.mrc in map
cryosparc_P25_J301_009_volume_map_sharp (1).mrc using 43896 points  
correlation = 0.9953, correlation about mean = 0.9659, overlap = 3.379e+04  
steps = 88, shift = 1.91, angle = 5.54 degrees  
  
Position of cryosparc_P25_J301_008_volume_map_sharp.mrc (#3) relative to
cryosparc_P25_J301_009_volume_map_sharp (1).mrc (#4) coordinates:  
Matrix rotation and translation  
0.99999998 0.00016690 -0.00000021 -0.02274380  
-0.00016690 0.99999998 -0.00000177 0.02647966  
0.00000021 0.00000177 1.00000000 0.01000129  
Axis 0.01059930 -0.00123304 -0.99994307  
Axis point 158.56852378 135.63266141 0.00000000  
Rotation angle (degrees) 0.00956322  
Shift along axis -0.01027444  
  

> show #!2 models

> select add #2

6 models selected  

> select subtract #3

4 models selected  

> fitmap #2 inMap #4

Fit map emd_36754.mrc in map cryosparc_P25_J301_009_volume_map_sharp (1).mrc
using 72591 points  
correlation = 0.6431, correlation about mean = 0.3524, overlap = 1.875e+04  
steps = 84, shift = 1.87, angle = 5.53 degrees  
  
Position of emd_36754.mrc (#2) relative to
cryosparc_P25_J301_009_volume_map_sharp (1).mrc (#4) coordinates:  
Matrix rotation and translation  
0.03757797 -0.99119665 0.12695312 270.45251881  
0.01870748 -0.12632280 -0.99181277 306.92717969  
0.99911857 0.03964529 0.01379584 28.57171292  
Axis 0.61157507 -0.51712684 0.59879526  
Axis point 0.00000000 261.38213485 25.03410538  
Rotation angle (degrees) 122.51188173  
Shift along axis 23.79034161  
  

> select subtract #4

2 models selected  

> hide #!1 models

> select add #1

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 4 models selected  

> show #!1 models

> fitmap #1 inMap #2

Fit molecule 8jzx.pdb (#1) to map emd_36754.mrc (#2) using 7108 atoms  
average map value = 0.8295, steps = 72  
shifted from previous position = 1.88  
rotated from previous position = 5.53 degrees  
atoms outside contour = 1006, contour level = 0.34545  
  
Position of 8jzx.pdb (#1) relative to emd_36754.mrc (#2) coordinates:  
Matrix rotation and translation  
0.35589566 0.04381768 -0.93349788 201.93762560  
-0.52556359 0.83535041 -0.16116017 120.48771679  
0.77273617 0.54796870 0.32032656 -132.78811918  
Axis 0.36676550 -0.88247398 -0.29448724  
Axis point 222.25599099 0.00000000 60.28141778  
Rotation angle (degrees) 75.17981699  
Shift along axis 6.84088525  
  

> hide #!3 models

> close #3

> select subtract #2

7108 atoms, 7296 bonds, 8 pseudobonds, 918 residues, 2 models selected  

> select subtract #1

Nothing selected  

> color #4 #b2a7ff models transparency 0

> color #4 #b29fff models transparency 0

> color #4 #b29fffa8 models

> color #4 #b29fff models transparency 0

> color #2 #b2e2ff models transparency 0

> surface dust #2 size 8.43

> surface dust #4 size 8.19

> surface dust #4 size 20

> surface dust #4 size 10

> surface dust #4 size 15

> hide #!4 models

> color #2 #b2e2ff70 models

Traceback (most recent call last):  
File
"/private/var/folders/rh/vkpyxl154wl72fc65qfgldnc0000gp/T/AppTranslocation/7FEA8119-AFF6-4120-BD2E-BF910DBC23BB/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/color_button.py", line 47, in
_make_color_callback  
_color_callback(*args)  
File
"/private/var/folders/rh/vkpyxl154wl72fc65qfgldnc0000gp/T/AppTranslocation/7FEA8119-AFF6-4120-BD2E-BF910DBC23BB/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/color_button.py", line 134, in _color_changed_cb  
self.color_changed.emit(self._color)  
RuntimeError: wrapped C/C++ object of type MultiColorButton has been deleted  
  

Populating font family aliases took 392 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.  

RuntimeError: wrapped C/C++ object of type MultiColorButton has been deleted  
  
File
"/private/var/folders/rh/vkpyxl154wl72fc65qfgldnc0000gp/T/AppTranslocation/7FEA8119-AFF6-4120-BD2E-BF910DBC23BB/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/color_button.py", line 134, in _color_changed_cb  
self.color_changed.emit(self._color)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: MKGQ3LL/A
      Chip: Unknown
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 10151.41.12
      OS Loader Version: 10151.41.12

Software:

    System Software Overview:

      System Version: macOS 14.1.1 (23B81)
      Kernel Version: Darwin 23.1.0
      Time since boot: 1 day, 5 hours, 59 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        LG HDR 4K:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.18.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.4
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-NIHPresets: 1.1.17
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBImages: 1.2
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-Phenix: 0.3
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StarMap: 1.2.15
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-XMAS: 1.1.2
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    et-xmlfile: 1.1.0
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openpyxl: 3.0.10
    openvr: 1.16.802
    packaging: 21.0
    pandas: 1.5.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    pyqtgraph: 0.13.1
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    QtRangeSlider: 0.1.5
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    seaborn: 0.12.1
    Send2Trash: 1.8.2
    SEQCROW: 1.8.7
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0