Crash in garbage collection

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-12.4-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Thread 0x00007000135ff000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Current thread 0x000000011e794600 (most recent call first):
  Garbage-collecting
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_weakrefset.py", line 58 in _commit_removals
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_weakrefset.py", line 33 in __exit__
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/_weakrefset.py", line 64 in __iter__
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/nucleotides/_data.py", line 519 in 
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/nucleotides/_data.py", line 519 in rebuild
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 65 in draw_new_frame
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 56)


{"app_name":"ChimeraX","timestamp":"2024-03-01 14:22:27.00 -0500","app_version":"1.7.1","slice_uuid":"194a3167-3db5-3029-8d22-1d742b826bb9","build_version":"1.7.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.4 (21F79)","incident_id":"AA270EC0-820C-48A1-B26C-7BAB9CD6EA89","name":"ChimeraX"}
{
  "uptime" : 2100000,
  "procLaunch" : "2024-03-01 13:46:11.2479 -0500",
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 503,
  "deployVersion" : 210,
  "modelCode" : "iMac19,1",
  "procStartAbsTime" : 2151244273457300,
  "coalitionID" : 236306,
  "osVersion" : {
    "train" : "macOS 12.4",
    "build" : "21F79",
    "releaseType" : "User"
  },
  "captureTime" : "2024-03-01 14:22:11.5481 -0500",
  "incident" : "AA270EC0-820C-48A1-B26C-7BAB9CD6EA89",
  "bug_type" : "309",
  "pid" : 31510,
  "procExitAbsTime" : 2153404380021580,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"9467D019-B08C-5E64-BB4D-1D3B24D7023B","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "DB204333-797C-AE5D-2B8B-DD28DC5268E3",
  "sip" : "enabled",
  "vmRegionInfo" : "0xa9 is not in any region.  Bytes before following region: 140737487650647\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      VM_ALLOCATE              7ffffff54000-7ffffff55000 [    4K] r-x\/r-x SM=ALI  ",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
  "vmregioninfo" : "0xa9 is not in any region.  Bytes before following region: 140737487650647\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      VM_ALLOCATE              7ffffff54000-7ffffff55000 [    4K] r-x\/r-x SM=ALI  ",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"queue":"com.apple.main-thread","instructionState":{"instructionStream":{"bytes":[255,255,255,255,72,137,216,72,139,0,72,255,194,72,57,195,117,245,72,141,61,197,18,22,0,72,141,181,112,255,255,255,49,192,232,191,131,254,255,72,139,5,104,231,22,0,72,139,0,72,59,69,216,117,13,72,131,196,112,91,65,92,65,94,65,95,93,195,232,205,174,14,0,102,46,15,31,132,0,0,0,0,0,15,31,0,85,72,137,229,83,80,72,139,71,8,246,128,169,0,0,0,64,117,9,49,192,72,131,196,8,91,93,195,72,137,251,72,139,128,72,1,0,0,72,133,192,117,18,72,139,67,248,168,2,116,224,72,131,192,252,72,137,67,248,235,214,72,137,223,255,208,133,192,117,229,235,203,15,31,132,0,0,0,0,0,85,72,137,229,65,86,83,72,139,71,8,246,128,169,0,0,0,64,117,7,49,192,91,65,94,93],"offset":96}},"frames":[{"imageOffset":32782,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":0},{"imageOffset":25087,"symbol":"pthread_kill","symbolLocation":263,"imageIndex":1},{"imageOffset":279256,"symbol":"raise","symbolLocation":26,"imageIndex":2},{"imageOffset":2590164,"symbol":"faulthandler_fatal_error","symbolLocation":388,"imageIndex":3},{"imageOffset":15869,"symbol":"_sigtramp","symbolLocation":29,"imageIndex":4},{"imageOffset":0,"imageIndex":5},{"imageOffset":848640,"symbol":"frame_traverse","symbolLocation":176,"imageIndex":3},{"imageOffset":2574472,"symbol":"gc_collect_main","symbolLocation":2568,"imageIndex":3},{"imageOffset":2580738,"symbol":"_PyObject_GC_Link","symbolLocation":306,"imageIndex":3},{"imageOffset":2580887,"symbol":"_PyObject_GC_New","symbolLocation":119,"imageIndex":3},{"imageOffset":2487185,"symbol":"PyTraceBack_Here","symbolLocation":225,"imageIndex":3},{"imageOffset":1858155,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":683,"imageIndex":3},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":3},{"imageOffset":698270,"symbol":"method_vectorcall","symbolLocation":334,"imageIndex":3},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":3},{"imageOffset":802673,"symbol":"gen_send_ex2","symbolLocation":209,"imageIndex":3},{"imageOffset":800614,"symbol":"gen_iternext","symbolLocation":22,"imageIndex":3},{"imageOffset":1910669,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":53197,"imageIndex":3},{"imageOffset":802673,"symbol":"gen_send_ex2","symbolLocation":209,"imageIndex":3},{"imageOffset":800614,"symbol":"gen_iternext","symbolLocation":22,"imageIndex":3},{"imageOffset":1169038,"symbol":"set_update_internal","symbolLocation":270,"imageIndex":3},{"imageOffset":1168530,"symbol":"set_vectorcall","symbolLocation":130,"imageIndex":3},{"imageOffset":1925168,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":67696,"imageIndex":3},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":3},{"imageOffset":698390,"symbol":"method_vectorcall","symbolLocation":454,"imageIndex":3},{"imageOffset":1257368,"symbol":"PyQtSlot::call(_object*, _object*) const","symbolLocation":40,"imageIndex":6},{"imageOffset":1257114,"symbol":"PyQtSlot::invoke(void**, _object*, void*, bool) const","symbolLocation":362,"imageIndex":6},{"imageOffset":1261029,"symbol":"PyQtSlotProxy::unislot(void**)","symbolLocation":85,"imageIndex":6},{"imageOffset":1260890,"symbol":"PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)","symbolLocation":58,"imageIndex":6},{"imageOffset":777575,"imageIndex":7},{"imageOffset":863063,"symbol":"QTimer::timerEvent(QTimerEvent*)","symbolLocation":199,"imageIndex":7},{"imageOffset":146281,"symbol":"sipQTimer::timerEvent(QTimerEvent*)","symbolLocation":121,"imageIndex":6},{"imageOffset":746701,"symbol":"QObject::event(QEvent*)","symbolLocation":109,"imageIndex":7},{"imageOffset":145898,"symbol":"sipQTimer::event(QEvent*)","symbolLocation":186,"imageIndex":6},{"imageOffset":51847,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":247,"imageIndex":8},{"imageOffset":55875,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":499,"imageIndex":8},{"imageOffset":1282534,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":230,"imageIndex":9},{"imageOffset":449594,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":170,"imageIndex":7},{"imageOffset":2061601,"symbol":"QTimerInfoList::activateTimers()","symbolLocation":961,"imageIndex":7},{"imageOffset":99493,"imageIndex":10},{"imageOffset":524699,"symbol":"__CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__","symbolLocation":17,"imageIndex":11},{"imageOffset":524547,"symbol":"__CFRunLoopDoSource0","symbolLocation":180,"imageIndex":11},{"imageOffset":523901,"symbol":"__CFRunLoopDoSources0","symbolLocation":242,"imageIndex":11},{"imageOffset":518296,"symbol":"__CFRunLoopRun","symbolLocation":892,"imageIndex":11},{"imageOffset":515676,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":11},{"imageOffset":189926,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":12},{"imageOffset":189258,"symbol":"ReceiveNextEventCommon","symbolLocation":594,"imageIndex":12},{"imageOffset":188645,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":70,"imageIndex":12},{"imageOffset":258557,"symbol":"_DPSNextEvent","symbolLocation":927,"imageIndex":13},{"imageOffset":252090,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1394,"imageIndex":13},{"imageOffset":196457,"symbol":"-[NSApplication run]","symbolLocation":586,"imageIndex":13},{"imageOffset":102572,"imageIndex":10},{"imageOffset":488230,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":486,"imageIndex":7},{"imageOffset":451125,"symbol":"QCoreApplication::exec()","symbolLocation":133,"imageIndex":7},{"imageOffset":2252186,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":90,"imageIndex":9},{"imageOffset":1095658,"symbol":"cfunction_call","symbolLocation":90,"imageIndex":3},{"imageOffset":680881,"symbol":"_PyObject_MakeTpCall","symbolLocation":129,"imageIndex":3},{"imageOffset":1917927,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60455,"imageIndex":3},{"imageOffset":1852538,"symbol":"PyEval_EvalCode","symbolLocation":282,"imageIndex":3},{"imageOffset":1830115,"symbol":"builtin_exec","symbolLocation":483,"imageIndex":3},{"imageOffset":1098052,"symbol":"cfunction_vectorcall_FASTCALL_KEYWORDS","symbolLocation":68,"imageIndex":3},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":3},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":3},{"imageOffset":2561789,"symbol":"pymain_run_module","symbolLocation":253,"imageIndex":3},{"imageOffset":2560449,"symbol":"Py_RunMain","symbolLocation":2225,"imageIndex":3},{"imageOffset":2564475,"symbol":"pymain_main","symbolLocation":43,"imageIndex":3},{"imageOffset":2564426,"symbol":"Py_Main","symbolLocation":42,"imageIndex":3},{"imageOffset":15770,"symbol":"main","symbolLocation":122,"imageIndex":14},{"imageOffset":21790,"symbol":"start","symbolLocation":462,"imageIndex":15}],"id":15546491,"triggered":true,"threadState":{"r13":{"value":140701786933761},"rax":{"value":0},"rflags":{"value":582},"cpu":{"value":0},"r14":{"value":11},"rsi":{"value":11},"r8":{"value":2},"cr2":{"value":4579632688},"rdx":{"value":0},"r10":{"value":4806231552,"symbolLocation":0,"symbol":"_main_thread"},"r9":{"value":14757395258967641293},"r15":{"value":22},"rbx":{"value":4806231552,"symbolLocation":0,"symbol":"_main_thread"},"trap":{"value":133},"err":{"value":33554760},"r11":{"value":582},"rip":{"value":140703345188878,"matchesCrashFrame":1},"rbp":{"value":140221757643280},"rsp":{"value":140221757643240},"r12":{"value":259},"rcx":{"value":140221757643240},"flavor":"x86_THREAD_STATE","rdi":{"value":259}},"name":"CrBrowserMain"},{"id":15546770,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546771,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546772,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546773,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546774,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":3466879,"symbol":"blas_thread_server","symbolLocation":207,"imageIndex":16},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546844,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":65958573,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546846,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010589,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546847,"name":"Chrome_IOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":48386978,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546848,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546853,"name":"CompositorTileWorker1","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":66219291,"imageIndex":17},{"imageOffset":100616493,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546854,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546855,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546857,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546858,"name":"VizCompositorThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546864,"name":"NetworkService","frames":[{"imageOffset":43210,"symbol":"kevent64","symbolLocation":10,"imageIndex":0},{"imageOffset":66456106,"imageIndex":17},{"imageOffset":66455847,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546865,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546866,"name":"ThreadPoolSingleThreadForegroundBlocking0","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010829,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546891,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546911,"name":"com.apple.NSEventThread","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":525197,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":319,"imageIndex":11},{"imageOffset":518680,"symbol":"__CFRunLoopRun","symbolLocation":1276,"imageIndex":11},{"imageOffset":515676,"symbol":"CFRunLoopRunSpecific","symbolLocation":562,"imageIndex":11},{"imageOffset":1756190,"symbol":"_NSEventThread","symbolLocation":132,"imageIndex":13},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546912,"name":"MemoryInfra","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15546913,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011034,"imageIndex":17},{"imageOffset":66010637,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15547304,"name":"ThreadPoolSingleThreadSharedForeground2","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010781,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15547630,"name":"NetworkConfigWatcher","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66251759,"imageIndex":17},{"imageOffset":65421769,"imageIndex":17},{"imageOffset":65919580,"imageIndex":17},{"imageOffset":65624472,"imageIndex":17},{"imageOffset":66059960,"imageIndex":17},{"imageOffset":66060362,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15548246,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010733,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15550450,"name":"QFileInfoGatherer","frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":2107627,"imageIndex":7},{"imageOffset":2107486,"symbol":"QWaitCondition::wait(QMutex*, QDeadlineTimer)","symbolLocation":94,"imageIndex":7},{"imageOffset":4529677,"symbol":"QFileInfoGatherer::run()","symbolLocation":125,"imageIndex":18},{"imageOffset":2066019,"imageIndex":7},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15565470,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":6522,"symbol":"mach_msg_trap","symbolLocation":10,"imageIndex":0},{"imageOffset":7400,"symbol":"mach_msg","symbolLocation":56,"imageIndex":0},{"imageOffset":66252326,"imageIndex":17},{"imageOffset":66009023,"imageIndex":17},{"imageOffset":66011756,"imageIndex":17},{"imageOffset":66010733,"imageIndex":17},{"imageOffset":66222344,"imageIndex":17},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]},{"id":15567147,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":15567322,"frames":[{"imageOffset":8008,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":1}]},{"id":15567440,"frames":[{"imageOffset":17386,"symbol":"__psynch_cvwait","symbolLocation":10,"imageIndex":0},{"imageOffset":27247,"symbol":"_pthread_cond_wait","symbolLocation":1249,"imageIndex":1},{"imageOffset":2482708,"symbol":"PyThread_acquire_lock_timed","symbolLocation":340,"imageIndex":3},{"imageOffset":3022238,"symbol":"acquire_timed","symbolLocation":318,"imageIndex":3},{"imageOffset":3022812,"symbol":"lock_PyThread_acquire_lock","symbolLocation":44,"imageIndex":3},{"imageOffset":752391,"symbol":"method_vectorcall_VARARGS_KEYWORDS","symbolLocation":167,"imageIndex":3},{"imageOffset":1917679,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":60207,"imageIndex":3},{"imageOffset":1942736,"symbol":"_PyEval_Vector","symbolLocation":128,"imageIndex":3},{"imageOffset":698390,"symbol":"method_vectorcall","symbolLocation":454,"imageIndex":3},{"imageOffset":3025702,"symbol":"thread_run","symbolLocation":230,"imageIndex":3},{"imageOffset":2481828,"symbol":"pythread_wrapper","symbolLocation":36,"imageIndex":3},{"imageOffset":25825,"symbol":"_pthread_start","symbolLocation":125,"imageIndex":1},{"imageOffset":8043,"symbol":"thread_start","symbolLocation":15,"imageIndex":1}]}],
  "usedImages" : [
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703345156096,
    "size" : 229376,
    "uuid" : "61711d11-e776-3bc3-b9a2-6f9f37cb8499",
    "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    "name" : "libsystem_kernel.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703345385472,
    "size" : 49152,
    "uuid" : "bc574849-1aae-31e7-b350-916dda999d97",
    "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    "name" : "libsystem_pthread.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703344140288,
    "size" : 561152,
    "uuid" : "d9ba0660-744d-3f84-9f80-afb51d450512",
    "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    "name" : "libsystem_c.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4577267712,
    "CFBundleShortVersionString" : "3.11.2, (c) 2001-2023 Python Software Foundation.",
    "CFBundleIdentifier" : "org.python.python",
    "size" : 4079616,
    "uuid" : "24670b23-d78a-3eaa-bca8-22faf877f190",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python",
    "name" : "Python",
    "CFBundleVersion" : "3.11.2"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703345483776,
    "size" : 40960,
    "uuid" : "f6cad74b-ec4d-3ff9-80f3-b066753f9fab",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
  },
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4656185344,
    "size" : 1589248,
    "uuid" : "2be8100b-aa99-3117-95ff-0200ddc4032f",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtCore.abi3.so",
    "name" : "QtCore.abi3.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4798537728,
    "size" : 5259264,
    "uuid" : "35b47b1c-6952-3d39-a5e7-711f3ca228f2",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
    "name" : "QtCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4943908864,
    "size" : 4964352,
    "uuid" : "f36760e5-d1e7-3a93-ae8c-1c3e55e3fc35",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
    "name" : "QtWidgets"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4648648704,
    "size" : 2801664,
    "uuid" : "babd94e3-ec19-3110-ab5b-11c39432d8c5",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/QtWidgets.abi3.so",
    "name" : "QtWidgets.abi3.so"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4952936448,
    "size" : 655360,
    "uuid" : "4bf756eb-ff87-3f7f-8c98-b1eda6463b81",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
    "name" : "libqcocoa.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64h",
    "base" : 140703345700864,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5255168,
    "uuid" : "f8e45ef9-9fd2-3331-bb1b-703d5dacdaf1",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "1863"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703493513216,
    "CFBundleShortVersionString" : "2.1.1",
    "CFBundleIdentifier" : "com.apple.HIToolbox",
    "size" : 3096576,
    "uuid" : "04544f53-a387-3ac3-a85d-f8adfc0bc69e",
    "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    "name" : "HIToolbox"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 140703390257152,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 15265792,
    "uuid" : "832ad371-d3b8-3061-b4e2-1c4e0cffce0b",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2113.50.132"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4561846272,
    "CFBundleShortVersionString" : "1.7.1",
    "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
    "size" : 16384,
    "uuid" : "194a3167-3db5-3029-8d22-1d742b826bb9",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
    "name" : "ChimeraX",
    "CFBundleVersion" : "1.7.1.0"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4805705728,
    "size" : 442368,
    "uuid" : "b70ce1ec-b902-3852-8268-05de00bfa8d5",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4664451072,
    "size" : 64094208,
    "uuid" : "9d768904-ac4b-327d-8126-cec11a08b966",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 5141647360,
    "size" : 165052416,
    "uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
    "name" : "QtWebEngineCore"
  },
  {
    "source" : "P",
    "arch" : "x86_64",
    "base" : 4958474240,
    "size" : 6979584,
    "uuid" : "49d915f7-1c6d-3bbd-b96f-064260e7d998",
    "path" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
    "name" : "QtGui"
  }
],
  "sharedCache" : {
  "base" : 140703342129152,
  "size" : 15220686848,
  "uuid" : "398acfb4-57f6-31e0-bc82-e9959e5c92ce"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG backing stores                 3840K        4 \nCG image                          9428K       74 \nCG raster data                     432K        1 \nColorSync                          236K       28 \nCoreAnimation                     18.4M      109 \nCoreGraphics                        12K        2 \nCoreUI image data                 5200K       40 \nFoundation                          40K        2 \nKernel Alloc Once                    8K        1 \nMALLOC                           529.9M      563 \nMALLOC guard page                   32K        7 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nMach message                        32K        5 \nObjC additional data                15K        1 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        116K       29 \nStack                            180.7M       30 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      199.4M      346 \nVM_ALLOCATE (reserved)            96.0M        2         reserved VM address space (unallocated)\n__CTF                               756        1 \n__DATA                            59.1M      690 \n__DATA_CONST                      31.4M      348 \n__DATA_DIRTY                      1659K      218 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       680.2M      157 \n__TEXT                           812.0M      690 \n__UNICODE                          592K        1 \ndyld private memory               1184K        3 \nmapped file                      518.8M       63 \nshared memory                     3488K       26 \n===========                     =======  ======= \nTOTAL                              3.4G     3454 \nTOTAL, minus reserved VM space     3.0G     3454 \n",
  "legacyInfo" : {
  "threadTriggered" : {
    "name" : "CrBrowserMain",
    "queue" : "com.apple.main-thread"
  }
},
  "trialInfo" : {
  "rollouts" : [
    {
      "rolloutId" : "607844aa04477260f58a8077",
      "factorPackIds" : {
        "SIRI_MORPHUN_ASSETS" : "6103050cbfe6dc472e1c982a"
      },
      "deploymentId" : 240000066
    },
    {
      "rolloutId" : "60186475825c62000ccf5450",
      "factorPackIds" : {

      },
      "deploymentId" : 240000069
    }
  ],
  "experiments" : [

  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> help help:quickstart

> open 4YIT

Summary of feedback from opening 4YIT fetched from pdb  
---  
notes | Fetching compressed mmCIF 4yit from
http://files.rcsb.org/download/4yit.cif  
Fetching CCD CA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/CA/CA.cif  
  
4yit title:  
Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA
[more info...]  
  
Chain information for 4yit #1  
---  
Chain | Description  
A D | Meganuclease I-AabMI  
B | DNA (25-MER)  
C | DNA (25-MER)  
E | DNA (25MER)  
F | DNA (25-MER)  
  
Non-standard residues in 4yit #1  
---  
CA — calcium ion  
  
4yit mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  

> show cartoons

> hide target a

> preset cartoons/nucleotides ribbons/slabs

Using preset: Cartoons/Nucleotides / Ribbons/Slabs  
Changed 6138 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> select /E

485 atoms, 541 bonds, 25 residues, 1 model selected  

> select /A

2074 atoms, 2106 bonds, 10 pseudobonds, 281 residues, 3 models selected  

> select /B

506 atoms, 562 bonds, 28 residues, 1 model selected  

> select /C

524 atoms, 586 bonds, 27 residues, 1 model selected  

> select add /A

2598 atoms, 2692 bonds, 10 pseudobonds, 308 residues, 3 models selected  

> select add /B

3104 atoms, 3254 bonds, 10 pseudobonds, 336 residues, 3 models selected  

> save /Users/petergogarten/Downloads/ChimeraX/PDB/chainA+DNA.pdb selectedOnly
> true relModel #1

> close session

> open /Users/petergogarten/Downloads/ChimeraX/PDB/chainA+DNA.pdb

Summary of feedback from opening
/Users/petergogarten/Downloads/ChimeraX/PDB/chainA+DNA.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 12 12 PRO D 3
GLU D 13 1 11  
Start residue of secondary structure not found: HELIX 13 13 HIS D 40 LYS D 42
1 3  
Start residue of secondary structure not found: HELIX 14 14 ASP D 43 LYS D 55
1 13  
Start residue of secondary structure not found: HELIX 15 15 THR D 73 TYR D 87
1 15  
Start residue of secondary structure not found: HELIX 16 16 LYS D 92 ASN D 109
1 18  
17 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ASP (209 )  
Cannot find LINK/SSBOND residue GLY (12 )  
Cannot find LINK/SSBOND residue GLU (13 )  
Cannot find LINK/SSBOND residue ALA (168 )  
Cannot find LINK/SSBOND residue GLU (169 )  
4 messages similar to the above omitted  
  
Chain information for chainA+DNA.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> select add /B

506 atoms, 562 bonds, 28 residues, 1 model selected  

> select add /C

1030 atoms, 1148 bonds, 55 residues, 1 model selected  

> show sel target ab

> nucleotides sel fill

> cartoon hide sel

> select /A

2074 atoms, 2106 bonds, 10 pseudobonds, 281 residues, 3 models selected  

> select helix

1084 atoms, 1099 bonds, 142 residues, 1 model selected  

> color sel red

> select strand

474 atoms, 478 bonds, 58 residues, 1 model selected  

> color sel yellow

> save /Users/petergogarten/Downloads/ChimeraX/PDB/chainA+DNA_colored.pdb
> relModel #1

> open 1lws

Summary of feedback from opening 1lws fetched from pdb  
---  
note | Fetching compressed mmCIF 1lws from
http://files.rcsb.org/download/1lws.cif  
  
1lws title:  
Crystal structure of the intein homing endonuclease PI-SceI bound to its
recognition sequence [more info...]  
  
Chain information for 1lws #2  
---  
Chain | Description | UniProt  
A | ENDONUCLEASE PI-SCEI | VATA_YEAST 1-454  
B | PI-SceI DNA recognition region top strand |  
C | PI-SceI DNA recognition region bottom strand |  
  
Non-standard residues in 1lws #2  
---  
CA — calcium ion  
  

> ui tool show Matchmaker

> matchmaker #!2 to #1/A pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker chainA+DNA.pdb, chain A (#1) with 1lws, chain A (#2), sequence
alignment score = 47.1  
RMSD between 10 pruned atom pairs is 1.368 angstroms; (across all 173 pairs:
28.731)  
  
Drag select of 10 residues  

> select #2/C

682 atoms, 760 bonds, 34 residues, 1 model selected  

> select add #1/C

1206 atoms, 1346 bonds, 61 residues, 2 models selected  

> cartoon hide sel

> select add #1/B

1712 atoms, 1908 bonds, 89 residues, 2 models selected  

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right rotate

> lighting soft

> lighting simple

> lighting full

> lighting soft

> lighting simple

> set bgColor white

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> select add #2

5786 atoms, 6130 bonds, 98 pseudobonds, 552 residues, 5 models selected  

> select subtract #2

1030 atoms, 1148 bonds, 55 residues, 1 model selected  

> select add #1

3104 atoms, 3254 bonds, 14 pseudobonds, 336 residues, 3 models selected  

> select subtract #1

Nothing selected  

> select add #1

3104 atoms, 3254 bonds, 14 pseudobonds, 336 residues, 3 models selected  

> select add #2

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> select subtract #2

3104 atoms, 3254 bonds, 14 pseudobonds, 336 residues, 3 models selected  

> select add #2

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> select subtract #2

3104 atoms, 3254 bonds, 14 pseudobonds, 336 residues, 3 models selected  

> select add #2

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> select subtract #2

3104 atoms, 3254 bonds, 14 pseudobonds, 336 residues, 3 models selected  

> select add #2

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> select subtract #1

4756 atoms, 4982 bonds, 98 pseudobonds, 497 residues, 4 models selected  

> select add #1

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> select subtract #1

4756 atoms, 4982 bonds, 98 pseudobonds, 497 residues, 4 models selected  

> select add #1

7860 atoms, 8236 bonds, 112 pseudobonds, 833 residues, 7 models selected  

> select subtract #1

4756 atoms, 4982 bonds, 98 pseudobonds, 497 residues, 4 models selected  

> select subtract #2

Nothing selected  

> log metadata #1

No models had metadata

> log chains #1

Chain information for chainA+DNA.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> close #1

> show target m

> log metadata #2

Metadata for 1lws #2  
---  
Title | Crystal structure of the intein homing endonuclease PI-SceI bound to
its recognition sequence  
Citations | Moure, C.M., Gimble, F.S., Quiocho, F.A. (2002). Crystal structure
of the intein homing endonuclease PI-SceI bound to its recognition sequence.
Nat.Struct.Biol., 9, 764-770. PMID: 12219083. DOI: 10.1038/nsb840  
Duan, X., Gimble, F.S., Quiocho, F.A. (1997). Crystal structure of PI-SceI, a
homing endonuclease with protein splicing activity. Cell(Cambridge,Mass.), 89,
555-564. DOI: 10.1016/S0092-8674(00)80237-8  
Non-standard residue | CA — calcium ion  
Gene source | Saccharomyces cerevisiae (baker's yeast)  
Experimental method | X-ray diffraction  
Resolution | 3.5Å  
  
> log chains #2

Chain information for 1lws #2  
---  
Chain | Description | UniProt  
A | ENDONUCLEASE PI-SCEI | VATA_YEAST 1-454  
B | PI-SceI DNA recognition region top strand |  
C | PI-SceI DNA recognition region bottom strand |  
  

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> show cartoons

> view #2 clip false

> open /Users/petergogarten/Downloads/ChimeraX/PDB/chainA+DNA_colored.pdb

Chain information for chainA+DNA_colored.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  

> select helix

2087 atoms, 2107 bonds, 268 residues, 2 models selected  


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.8.54
OpenGL renderer: AMD Radeon Pro 575X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac19,1
      Processor Name: 6-Core Intel Core i5
      Processor Speed: 3.1 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Memory: 16 GB
      System Firmware Version: 1731.120.8.0.0
      OS Loader Version: 540.120.3~6
      SMC Version (system): 2.46f13

Software:

    System Software Overview:

      System Version: macOS 12.4 (21F79)
      Kernel Version: Darwin 21.5.0
      Time since boot: 24 days 22:12

Graphics/Displays:

    Radeon Pro 575X:

      Chipset Model: Radeon Pro 575X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67df
      Revision ID: 0x00c4
      ROM Revision: 113-D0008A-042
      VBIOS Version: 113-D0008A14GP-003
      EFI Driver Version: 01.B1.042
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: Retina 5K (5120 x 2880)
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9