![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Mar 12, 2021:
- 3:53 PM Ticket #4362 (Segger: thrD is None) created by
- […]
- 12:29 PM NeteSOW edited by
- (diff)
- 12:23 PM Ticket #4359 (Surface caps: Array argument has non-numeric values) closed by
- duplicate: Fixed a year and a half ago. #2279 Would be nice improvement to bug …
- 12:20 PM Ticket #4357 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 1) closed by
- nonchimerax: Apple graphics driver crash. Ticket #4350 discusses idea for limiting …
- 11:51 AM NeteSOW edited by
- (diff)
- 11:23 AM NeteSOW edited by
- (diff)
- 9:29 AM Ticket #4361 (Crash in new_bond during AddH) closed by
- can't reproduce: Though fascinating, the stack trace alone isn't really of much help in …
- 9:26 AM Ticket #4360 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
Mar 11, 2021:
- 11:44 PM Ticket #4361 (Crash in new_bond during AddH) created by
- […]
- 6:59 PM Ticket #4360 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 1:39 PM 2021-3-11 edited by
- (diff)
- 1:39 PM 2021-3-11 edited by
- (diff)
- 1:36 PM 2021-3-11 edited by
- (diff)
- 1:35 PM 2021-3-11 edited by
- (diff)
- 1:34 PM 2021-3-11 edited by
- (diff)
- 1:32 PM 2021-3-11 edited by
- (diff)
- 12:28 PM Dev2021-3-4 edited by
- (diff)
- 8:37 AM Ticket #4356 (Disk quota exceeded saving command history) closed by
- nonchimerax: We're probably not yet to the point that we want to do something …
- 8:33 AM Ticket #4355 (defattr via 'open') closed by
- not a bug: Hi JD! You aren't doing anything wrong per se, but the ability to …
- 7:36 AM Ticket #4359 (Surface caps: Array argument has non-numeric values) created by
- […]
- 3:34 AM Ticket #4358 (mmCIF selectedOnly very slow) created by
- […]
- 3:02 AM Ticket #4357 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 1) created by
- […]
- 2:00 AM Ticket #4356 (Disk quota exceeded saving command history) created by
- […]
- 1:17 AM Ticket #4355 (defattr via 'open') created by
- […]
Mar 10, 2021:
- 6:09 PM 2021-3-11 edited by
- (diff)
- 6:06 PM 2021-3-11 edited by
- (diff)
- 6:06 PM 2021-3-11 edited by
- (diff)
- 6:05 PM 2021-3-11 edited by
- (diff)
- 6:05 PM 2021-3-11 edited by
- (diff)
- 6:04 PM 2021-3-11 edited by
- (diff)
- 6:04 PM ChangeLog edited by
- (diff)
- 2:30 PM 2021-3-11 created by
- 2:29 PM DeveloperMeetings edited by
- (diff)
- 2:28 PM Ticket #4339 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) closed by
- nonchimerax: Did some testing of macOS OpenGL driver crashes using large surfaces …
- 11:56 AM Ticket #4346 (3D labels: could not broadcast input array from shape) closed by
- fixed: Duplicate. Fixed in daily build many months ago. User tried to show …
- 11:27 AM Ticket #4348 (conference uses notoriously insecure pickle) closed by
- fixed: Git removed conference. It is not used, never worked, superceded by …
- 10:03 AM Ticket #4347 (blastprotein uses notoriously insecure pickle in session data) closed by
- fixed: Okay. Done.
- 9:59 AM Ticket #4354 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') closed by
- fixed: Known bug, fixed in my local version. I guess it's time I put out …
- 9:42 AM Ticket #4353 (Modeller job fault / server error) closed by
- duplicate: Hi Demian, Thanks for reporting this problem. The Modeller web …
- 4:59 AM Ticket #4354 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') created by
- […]
- 4:41 AM Ticket #4353 (Modeller job fault / server error) created by
- […]
Mar 9, 2021:
- 8:06 PM Ticket #4352 (Mac Intel graphics driver crash with 300 million triangle surface) closed by
- nonchimerax
- 8:00 PM Ticket #4351 (OpenGL out of memory, four large surfaces, macOS, Intel graphics) closed by
- nonchimerax
- 7:59 PM Ticket #4352 (Mac Intel graphics driver crash with 300 million triangle surface) created by
- […]
- 7:53 PM Ticket #4351 (OpenGL out of memory, four large surfaces, macOS, Intel graphics) created by
- […]
- 7:12 PM Ticket #4350 (Apple graphics driver crash, large surface) created by
- […]
- 6:58 PM Ticket #4336 (Listing desktop to save image: Operation not permitted) closed by
- duplicate: Already have a user friendly error message being generated. This …
- 6:33 PM Ticket #4349 (Startup error not reported) created by
- […]
- 5:48 PM ChangeLog edited by
- (diff)
- 5:45 PM ChangeLog edited by
- (diff)
- 5:24 PM Ticket #4348 (conference uses notoriously insecure pickle) created by
- pickle create objects directly during deserialization and is known to …
- 5:20 PM Ticket #4347 (blastprotein uses notoriously insecure pickle in session data) created by
- Sessions should only contain primitive data. pickle create objects …
- 4:38 PM Ticket #4346 (3D labels: could not broadcast input array from shape) created by
- […]
- 4:34 PM Ticket #3983 (Update Tool: No matching distribution found for ChimeraX-RMF==0.9) closed by
- fixed: Bundle wheel names, which encode the versions of Python and which …
- 4:06 PM Ticket #4345 (Markers placed in wrong position on map if marker set moved) closed by
- fixed: Fixed. The marker placement mouse modes were not correctly handling …
- 3:33 PM Ticket #4345 (Markers placed in wrong position on map if marker set moved) created by
- […]
- 12:46 PM Ticket #4344 (Window-size preference not honored) closed by
- fixed: During the switch from PyQt5 to PySide2, T.G. added a short-circuiting …
- 12:13 PM Ticket #4344 (Window-size preference not honored) created by
- […]
- 11:41 AM Ticket #4335 (Opening PDB via rest remotecontrol reports mystery error in JSON output) closed by
- fixed: The JSON part of the 'open' code hadn't been revised to account for …
- 11:17 AM Ticket #4340 (Matchmaker: 'NoneType' object has no attribute 'atomspec') closed by
- fixed: No structures with chains were open. Added more error checking.
- 9:35 AM Ticket #4343 (PDB writing: issue error/warning for long chain IDs) created by
- […]
- 9:31 AM Ticket #4342 (mmCIF format-compliance issues) created by
- […] 6xra_rebuilt_glycan_chains_reassigned.cif
- 8:31 AM Ticket #4341 (Confusion with 'OK') closed by
- not a bug: Hi Luca, That's basically how 'OK' works: it's Apply + close window. …
- 8:21 AM Ticket #4337 (Toolshed using internal UI API) closed by
- duplicate
- 4:13 AM Ticket #4341 (Confusion with 'OK') created by
- […]
- 12:13 AM Ticket #4340 (Matchmaker: 'NoneType' object has no attribute 'atomspec') created by
- […]
Mar 8, 2021:
- 4:54 PM Ticket #4339 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) created by
- […]
- 3:34 PM Ticket #4338 (crystalcontacts traceback on 1g74 schematic) closed by
- fixed: Fixed. Crystal symmetries changed the identity symmetry to have small …
- 2:33 PM Ticket #4338 (crystalcontacts traceback on 1g74 schematic) created by
- […]
- 1:33 PM Ticket #4337 (Toolshed using internal UI API) created by
- […]
- 1:24 PM Ticket #4336 (Listing desktop to save image: Operation not permitted) created by
- […]
- 1:09 PM ChangeLog edited by
- (diff)
- 11:27 AM Ticket #4333 (Toolshed install: AttributeError: 'str' object has no attribute 'name') closed by
- duplicate
- 11:26 AM Ticket #4332 (Toolshed using internal UI API) closed by
- duplicate
- 10:51 AM Ticket #4330 (mmCIF _struct_sheet output not accepted by REFMAC) closed by
- nonchimerax: My bad. Looks like this is not a ChimeraX problem after all (the mmCIF …
- 10:38 AM Ticket #4334 (Windows crash in show_open_file_dialog()) closed by
- nonchimerax: User appears to be using Chinese language Windows 10 (Build 18363), Qt …
- 10:32 AM Ticket #4331 (OSError: Unable to open file '...model10_from_Chimera.pdb' for writing) closed by
- not a bug: User error.
- 10:08 AM Ticket #4335 (Opening PDB via rest remotecontrol reports mystery error in JSON output) created by
- […]
- 3:48 AM Ticket #4334 (Windows crash in show_open_file_dialog()) created by
- […]
Mar 6, 2021:
- 9:46 PM Ticket #4333 (Toolshed install: AttributeError: 'str' object has no attribute 'name') created by
- […]
- 9:45 PM Ticket #4332 (Toolshed using internal UI API) created by
- […]
- 11:52 AM Ticket #4331 (OSError: Unable to open file '...model10_from_Chimera.pdb' for writing) created by
- […]
Mar 5, 2021:
- 9:25 PM Ticket #4231 (Colorbrewer palettes not using correct default number of colors) closed by
- fixed: The fix for #4208 appears to fix this too. {{{key pastel1 :12 : :24 : …
- 9:17 PM Ticket #4208 (Color arg no longer handled correctly) closed by
- fixed: Fixed by reverting Tom's optimization to not use sorted dictionaries. …
- 1:09 PM Ticket #4330 (mmCIF _struct_sheet output not accepted by REFMAC) created by
- […]
- 12:13 PM Ticket #4325 (Problems with MMTF bondAtomList) closed by
- fixed: I've updated ChimeraX to use the latest mmtf-cpp source code and made …
- 10:22 AM Ticket #4329 (Crash with trashed stack) created by
- […]
- 9:20 AM Ticket #4327 (Crash during some kind of mouse event) closed by
- can't reproduce
Mar 4, 2021:
- 6:05 PM ChangeLog edited by
- (diff)
- 4:32 PM 2021-3-4 edited by
- (diff)
- 4:30 PM 2021-3-4 edited by
- (diff)
- 4:29 PM 2021-3-4 edited by
- (diff)
- 3:19 PM Dev2021-3-4 edited by
- (diff)
- 3:17 PM Dev2021-3-4 edited by
- (diff)
- 3:12 PM Dev2021-3-4 edited by
- (diff)
- 2:01 PM Ticket #4328 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by
- […]
- 1:02 PM Dev2021-3-4 edited by
- (diff)
- 12:38 PM Ticket #4327 (Crash during some kind of mouse event) created by
- […]
- 11:35 AM Ticket #4279 (Session restore: invalid load key) closed by
- duplicate: Probably same bug as #4393.
- 11:18 AM Ticket #4326 (Crash during garbage collection) created by
- […]
- 11:00 AM Ticket #4325 (Problems with MMTF bondAtomList) created by
- […] sal.mmtf
- 10:57 AM Ticket #4321 (Crash importing core.fetch) closed by
- can't reproduce: Well, maybe, but those other garbage collection crashes "felt" like …
- 10:17 AM Ticket #4324 (Crash initializing OpenGL (dual display)) closed by
- can't reproduce
- 10:02 AM Ticket #4324 (Crash initializing OpenGL (dual display)) created by
- […]
- 9:40 AM Ticket #4323 (AddH crash) closed by
- duplicate: Fixed in AddH 2.1.3, available on the toolshed.
- 8:19 AM Ticket #4323 (AddH crash) created by
- […]
- 7:14 AM Ticket #4322 (Matchmaker change matrix: wrapped C/C++ object of type QPushButton has ...) created by
- […]
Mar 3, 2021:
- 9:15 PM Ticket #4321 (Crash importing core.fetch) created by
- […]
- 3:47 PM Ticket #4320 (Rainbow structures makes surface transparent black) closed by
- fixed: Fixed. Surfaces were being colored with 0-1 float rgba instead of …
- 3:42 PM Ticket #4320 (Rainbow structures makes surface transparent black) created by
- […]
- 2:04 PM Ticket #4319 (Out of memory rendering volume texture) closed by
- duplicate: Duplicate of #4316
- 2:01 PM Ticket #4318 (Toolshed using internal UI API) closed by
- duplicate: Hi Sofea, Thanks for reporting this error. The packages you were …
- 1:43 PM Ticket #4317 (Problem saving PNG image) closed by
- not a bug: Hi Pooja, The format name is now 'png' rather than 'PNG'. Also, if …
- 11:55 AM Ticket #4319 (Out of memory rendering volume texture) created by
- […]
- 10:48 AM Ticket #4318 (Toolshed using internal UI API) created by
- […]
- 10:23 AM Ticket #4316 (Out of memory rendering volume texture) closed by
- nonchimerax: Graphics reports out of memory trying to allocate an OpenGL 3D texture …
- 10:11 AM Ticket #4314 (Permission denied trying to generate crash report) closed by
- nonchimerax: Same user reported this error before #2960 #2959 For unknown reasons …
- 9:41 AM Ticket #4317 (Problem saving PNG image) created by
- […]
- 9:24 AM Ticket #4315 (Coulombic failure due to unexpected hydrogen name) closed by
- not a bug: Hi Gus, In order for coulombic to add hydrogens and assign accurate …
- 8:23 AM Ticket #4313 (Crash in garbage collection during new-object allocation) closed by
- can't reproduce
- 7:49 AM Ticket #4316 (Out of memory rendering volume texture) created by
- […]
- 7:17 AM Ticket #4315 (Coulombic failure due to unexpected hydrogen name) created by
- […]
- 4:43 AM Ticket #4314 (Permission denied trying to generate crash report) created by
- […]
- 3:56 AM Ticket #4313 (Crash in garbage collection during new-object allocation) created by
- […]
Mar 2, 2021:
- 3:10 PM Ticket #4311 (creating molmap after starting Measure Volume and Area causes traceback) closed by
- fixed: Fixed. Measure volume and area raised an error for surfaces that have …
- 3:02 PM Ticket #4310 (showing Hide Dust tool (or others) with hidden map model gives traceback) closed by
- fixed: Fixed. I made an improvement to ModelMenu yesterday for the Measure …
- 1:18 PM Ticket #4312 (Toolshed error in "already installed" error message) closed by
- duplicate: Hi Cody, Thanks for reporting this problem. Looking at your log, it …
- 1:10 PM Ticket #4312 (Toolshed error in "already installed" error message) created by
- […]
- 12:40 PM Ticket #4311 (creating molmap after starting Measure Volume and Area causes traceback) created by
- […]
- 12:28 PM Ticket #4310 (showing Hide Dust tool (or others) with hidden map model gives traceback) created by
- […]
- 12:07 PM Ticket #4309 (ISOLDE: backrub failure) created by
- […]
- 10:40 AM 2021-3-4 edited by
- (diff)
- 10:40 AM 2021-3-4 created by
- 10:38 AM DeveloperMeetings edited by
- (diff)
- 9:31 AM Ticket #4308 (QtWebEngine crash) closed by
- can't reproduce: Thanks for responding. I assume that "color helix yellow" doesn't …
- 6:50 AM Ticket #4308 (QtWebEngine crash) created by
- […]
Mar 1, 2021:
- 6:17 PM Ticket #4307 (Volume viewer style change from mesh to plane logs invalid command) closed by
- fixed: Fixed. Logging command incorrectly handled mesh shown to not shown.
- 6:11 PM Ticket #4307 (Volume viewer style change from mesh to plane logs invalid command) created by
- […]
- 4:27 PM Ticket #4306 (Add graphical user interfaces for volumes, surfaces, higher-order structure) created by
- There are many Chimera graphical user interfaces that should probably …
- 3:21 PM Ticket #4305 (ISOLDE residue validation: cannot unpack non-iterable ...) created by
- […]
- 2:52 PM Ticket #4304 (Error in toolshed error message) closed by
- duplicate: Hi Sarah, You have the Molecular Dynamics Viewer successfully …
- 2:44 PM Ticket #4304 (Error in toolshed error message) created by
- […]
- 2:16 PM Ticket #4298 (Graphics crash, macOS 11.3, Intel Iris 550) closed by
- can't reproduce: Apple graphics driver bug.
- 2:08 PM Ticket #4302 (Color key: unsupported locale setting) closed by
- fixed: If US locale unavailable, cross our fingers and use the local one
- 1:38 PM Ticket #4303 (Coulombic failure due to unexpected hydrogen name) closed by
- duplicate: Hi James, The implicit hydrogen addition to the structure is …
- 1:25 PM Ticket #4301 (coulombic failure due to unexpected hydrogen name) closed by
- duplicate: Hi Ido, The Coulombic included in ChimeraX 1.1 requires that hydrogen …
- 12:02 PM Ticket #4299 (Crash: Calling windowShouldClose: on the delegate for the QNSPanel) closed by
- can't reproduce
- 1:42 AM Ticket #4303 (Coulombic failure due to unexpected hydrogen name) created by
- […]
Feb 28, 2021:
- 9:45 PM Ticket #4302 (Color key: unsupported locale setting) created by
- […]
- 8:02 AM Ticket #4301 (coulombic failure due to unexpected hydrogen name) created by
- […]
Feb 26, 2021:
- 11:37 PM Ticket #4297 ((pseudo)bonds in X3D output do not connect to ribbon) closed by
- fixed: Was able to reproduce this with 1gcn, a helix, and the command "hbond …
- 8:28 PM Ticket #4300 (multiple possible sequence matches) created by
- […] DNA.pdb
- 4:07 PM Ticket #4299 (Crash: Calling windowShouldClose: on the delegate for the QNSPanel) created by
- […]
- 1:54 PM ChangeLog edited by
- (diff)
- 11:35 AM Ticket #4298 (Graphics crash, macOS 11.3, Intel Iris 550) created by
- […]
- 11:17 AM Ticket #4297 ((pseudo)bonds in X3D output do not connect to ribbon) created by
- […] strut_x3d_bug.cxs
- 8:47 AM Ticket #4295 (AddH crash) closed by
- duplicate: Hi Gus, Thanks for reporting this problem. It is fixed in the 2.1.3 …
- 8:43 AM Ticket #4294 (Addh crash) closed by
- duplicate: Fixed with AddH 2.1.3
- 8:35 AM Ticket #4296 (Maestro pose viewer file: KeyError: 'i_m_residue_number') created by
- […]
- 5:34 AM Ticket #4295 (AddH crash) created by
- […]
- 5:32 AM Ticket #4294 (Addh crash) created by
- […]
Feb 25, 2021:
- 7:42 PM Ticket #4293 (Asks for Desktop access at first startup on macOS even though Desktop ...) closed by
- nonchimerax: I think asking for Desktop permission when it isn't actually needed …
- 6:56 PM Ticket #4293 (Asks for Desktop access at first startup on macOS even though Desktop ...) created by
- […]
- 3:09 PM Dev2021-3-4 edited by
- (diff)
- 3:02 PM 2021-2-25 edited by
- (diff)
- 2:55 PM NeteSOW edited by
- (diff)
- 2:30 PM NeteSOW edited by
- (diff)
- 1:27 PM NeteSOW edited by
- (diff)
- 1:34 AM Ticket #4292 (Problem restoring session: invalid load key) created by
- […]
Feb 24, 2021:
- 8:25 PM Ticket #4290 (Various session save/restore errors) closed by
- duplicate: First error is session not restoring caused by a bad session file …
- 6:09 PM ChangeLog edited by
- (diff)
- 8:47 AM Ticket #4291 (AddH crash) closed by
- duplicate: Fixed in AddH 2.1.3, available off the toolshed.
- 8:38 AM Ticket #4289 (Dual display crash) closed by
- duplicate: Qt 5.12
- 7:32 AM Ticket #4291 (AddH crash) created by
- […] …
- 7:24 AM Ticket #4290 (Various session save/restore errors) created by
- […]
Feb 23, 2021:
- 4:13 PM Ticket #4289 (Dual display crash) created by
- […]
- 3:57 PM 2021-2-25 created by
- 3:51 PM DeveloperMeetings edited by
- (diff)
- 2:27 PM Ticket #4288 (ISOLDE tugging: unsupported operand type(s) for -: 'NoneType' and ...) closed by
- fixed
- 10:57 AM Ticket #4287 (Graphics crash, macOS 10.15.7, Radeon Pro 580X) closed by
- nonchimerax: The Apple graphics driver crashed, from the crash dump "Graphics …
- 9:46 AM Ticket #4288 (ISOLDE tugging: unsupported operand type(s) for -: 'NoneType' and ...) created by
- […]
- 9:35 AM Ticket #4285 (Dual display crash) closed by
- duplicate: Qt 5.12
- 9:22 AM Ticket #4287 (Graphics crash, macOS 10.15.7, Radeon Pro 580X) created by
- […]
- 1:53 AM Ticket #4286 (Problem saving clashes settings) created by
- […]
Feb 22, 2021:
- 7:59 PM Ticket #4285 (Dual display crash) created by
- […]
- 6:58 PM Ticket #4284 (Slow erratic zoom on trackpad scroll up with no multitouch) closed by
- fixed: Fixed. Elaine reported this, only happens when multitouch turned off …
- 6:48 PM Ticket #4284 (Slow erratic zoom on trackpad scroll up with no multitouch) created by
- […]
- 5:57 PM Ticket #4217 (Mol2 chirality) closed by
- nonchimerax
- 5:47 PM Ticket #4283 (Error in toolshed error message) closed by
- duplicate: Hi Reta, Thanks for reporting this problem. You had already …
- 2:57 PM ChangeLog edited by
- (diff)
- 1:19 PM Ticket #4274 (Graphics crash, macOS 10.15.7, Radeon Pro 560X) closed by
- nonchimerax: Apple graphics driver crash, 2019 iMac, Radeon Pro 560X graphics. …
- 1:18 PM Ticket #4283 (Error in toolshed error message) created by
- […]
- 12:49 PM Ticket #4282 (Toolshed using internal UI API) created by
- […]
- 9:33 AM Ticket #4281 (Problem fetching Modeller results) closed by
- duplicate: Hi Alexa, The problem is the '|' characters in the sequence name used …
- 9:07 AM Ticket #4277 (TypeError setting model attribute) closed by
- duplicate: Fixed in the daily build for a little while now. --Eric
- 9:05 AM Ticket #4275 (Toolshed using internal UI API) closed by
- duplicate
- 7:18 AM Ticket #4281 (Problem fetching Modeller results) created by
- […]
Feb 21, 2021:
Feb 20, 2021:
- 9:53 AM Ticket #4279 (Session restore: invalid load key) created by
- […]
- 4:57 AM Ticket #4278 (Adjust map magnification to optimize fit of atomic structure) created by
- […]
- 2:18 AM Ticket #4277 (TypeError setting model attribute) created by
- […]
Feb 19, 2021:
- 7:29 PM Ticket #4276 (Crash on quit in PyQt5 cleanup, macOS) closed by
- can't reproduce: Don't know how to reproduce this. Never saw it before.
- 7:15 PM Ticket #4276 (Crash on quit in PyQt5 cleanup, macOS) created by
- […]
- 5:57 PM Ticket #4275 (Toolshed using internal UI API) created by
- […]
- 10:52 AM Ticket #4274 (Graphics crash, macOS 10.15.7, Radeon Pro 560X) created by
- […]
- 9:57 AM Ticket #4273 (silhouettes look wrong) created by
- […] chimeraX.png
- 9:28 AM Ticket #4271 (Toolshed using internal UI API) closed by
- duplicate
- 8:43 AM Ticket #4272 (Graphics window not full size) created by
- […] Chimera X bug.JPG
Feb 18, 2021:
- 9:17 PM Ticket #4271 (Toolshed using internal UI API) created by
- […]
- 5:54 PM 2021-2-18 edited by
- (diff)
- 4:23 PM Ticket #4269 (AddH: can't form new hydrogen name) closed by
- fixed
- 3:58 PM Ticket #4270 (depict bond orders) created by
- Compute bond orders and then depict them
- 2:46 PM Dev2021-3-4 created by
- 2:44 PM DeveloperMeetings edited by
- (diff)
- 2:41 PM Dev2021-2-18 edited by
- (diff)
- 2:30 PM Dev2021-2-18 edited by
- (diff)
- 2:28 PM Dev2021-2-18 edited by
- (diff)
- 2:27 PM Dev2021-2-18 edited by
- (diff)
- 12:49 PM 2021-2-18 edited by
- (diff)
- 12:48 PM 2021-2-18 edited by
- (diff)
- 12:06 PM 2021-2-18 edited by
- (diff)
- 11:32 AM 2021-2-18 edited by
- (diff)
- 11:07 AM 2021-2-18 edited by
- (diff)
- 9:58 AM Ticket #4269 (AddH: can't form new hydrogen name) created by
- […]
- 9:46 AM Ticket #4268 (AddH: can't form new hydrogen name) closed by
- duplicate: Hi John, Thanks for reporting this problem. I believe this issue is …
- 9:07 AM Ticket #4266 (Error in toolshed error message) closed by
- duplicate: Hi Amr, You can safely ignore that error. ChimeraX was trying to …
- 9:04 AM Ticket #4265 (Error in toolshed error message) closed by
- duplicate
- 8:55 AM Ticket #4263 (SEQCROW: cannot find substituent directory) closed by
- duplicate
- 7:23 AM Ticket #4268 (AddH: can't form new hydrogen name) created by
- […]
- 7:12 AM Ticket #4267 (Problem docking ISOLDE widget) created by
- […]
- 5:17 AM Ticket #4266 (Error in toolshed error message) created by
- […]
- 5:12 AM Ticket #4265 (Error in toolshed error message) created by
- […]
Feb 17, 2021:
- 10:49 PM Ticket #4264 (Modeller: cannot handle direction association onto target if deletions ...) created by
- […]
- 10:49 PM Ticket #4263 (SEQCROW: cannot find substituent directory) created by
- […]
- 8:16 PM Dev2021-2-18 edited by
- (diff)
- 8:15 PM Dev2021-2-18 edited by
- (diff)
- 7:49 PM Ticket #4262 (Does Toolshed avoid installing incompatible dependencies?) created by
- I am wondering if the Toolshed will update bundles that result in …
- 7:30 PM Ticket #4261 (need to update search index after bundle is submitted) created by
- This could either be done via a daily cron job, or it could be done …
- 6:07 PM Ticket #3430 (Support >4 character atom names) closed by
- fixed: Okay, buckle your seatbelts, I've changed atom.name to string. That …
- 4:03 PM Dev2021-2-18 edited by
- (diff)
- 9:58 AM Ticket #4260 (Graphics crash, macOS 10.15.7, Intel Iris Plus 640) closed by
- can't reproduce: Possible duplicate of #4257, #4259, #4259.. Different computer but …
- 9:56 AM Ticket #4259 (Graphics crash, macOS 11.1, Intel Iris Plus, report 4) closed by
- duplicate: Duplicate of #4257. Same user. Apparently they have a reproducible …
- 9:55 AM Ticket #4258 (Graphics crash, macOS 11.1, Intel Iris Plus, report 3) closed by
- duplicate: Duplicate of #4257. Same user. Apparently they have a reproducible …
- 9:54 AM Ticket #4257 (Graphics crash, macOS 11.1, Intel Iris Plus, report 2) closed by
- can't reproduce: Apple graphics driver bug.
- 9:45 AM Ticket #4256 (Dual display crash) closed by
- can't reproduce
- 9:41 AM Ticket #4255 (Blast results problem) closed by
- duplicate: Hello, Thanks for reporting this problem. It is fixed in the daily …
- 9:38 AM Ticket #4254 (SEQCROW: cannot find substituent directory) closed by
- duplicate
- 9:36 AM Ticket #4253 (Permission denied saving image) closed by
- can't reproduce: Really? Can't save to his own Documents folder?
- 8:55 AM Ticket #4260 (Graphics crash, macOS 10.15.7, Intel Iris Plus 640) created by
- […]
- 8:30 AM Ticket #4259 (Graphics crash, macOS 11.1, Intel Iris Plus, report 4) created by
- […]
- 7:06 AM Ticket #4258 (Graphics crash, macOS 11.1, Intel Iris Plus, report 3) created by
- […]
- 5:24 AM Ticket #4257 (Graphics crash, macOS 11.1, Intel Iris Plus, report 2) created by
- […]
- 1:59 AM Ticket #4256 (Dual display crash) created by
- […]
Feb 16, 2021:
- 10:40 PM Ticket #4255 (Blast results problem) created by
- […]
- 9:29 PM Ticket #4254 (SEQCROW: cannot find substituent directory) created by
- […]
- 8:57 PM Ticket #4253 (Permission denied saving image) created by
- […]
- 12:08 PM Ticket #4246 (Add Charge: dictionary changed size during iteration) closed by
- fixed
- 11:48 AM Ticket #4243 (mlp command does not work on volume surface) closed by
- fixed: Fixed. Made mlp work on surfaces that don't have atoms associated …
- 11:33 AM Ticket #4247 (coulombic protein chargeMethod gas: parse() missing 1 required ...) closed by
- fixed: Fixed. Also removed the preemptive odd-number-of-electrons check if …
- 10:56 AM Ticket #4249 (Graphics hardware encountered an error and was reset) closed by
- can't reproduce: Apple Intel graphics driver crash.
- 10:54 AM Ticket #4251 (Add Charge trying to use local libquadmath) closed by
- fixed: I *believe* this is fixed now -- but it needs testing on a machine …
- 10:46 AM Ticket #4250 (Scipion/Volume Viewer histogram: cannot convert float NaN to integer) closed by
- nonchimerax: User opened MRC map file with NaN intensity values.
- 9:07 AM Ticket #4252 (Toolshed using internal UI API) closed by
- duplicate: Hi, Thanks for reporting this problem. You can safely ignore it -- …
- 8:56 AM Ticket #4252 (Toolshed using internal UI API) created by
- […]
- 8:49 AM Ticket #4251 (Add Charge trying to use local libquadmath) created by
- I can use Chimera addcharge on 1xf6, which has inline MEN …
- 3:31 AM Ticket #4250 (Scipion/Volume Viewer histogram: cannot convert float NaN to integer) created by
- […]
Feb 15, 2021:
- 9:03 AM Ticket #4248 (Error in toolshed error message) closed by
- duplicate
- 8:58 AM Ticket #4245 (Toolshed using internal UI API) closed by
- duplicate: Hi Uttam, You can safely ignore the error -- the packages were …
Feb 14, 2021:
- 11:28 PM Ticket #4249 (Graphics hardware encountered an error and was reset) created by
- […]
- 11:21 PM Ticket #4248 (Error in toolshed error message) created by
- […]
- 9:54 AM Ticket #4247 (coulombic protein chargeMethod gas: parse() missing 1 required ...) created by
- […]
- 7:48 AM Ticket #4246 (Add Charge: dictionary changed size during iteration) created by
- […]
- 12:01 AM Ticket #4245 (Toolshed using internal UI API) created by
- […]
Feb 13, 2021:
- 3:52 PM Ticket #4244 (SEQCROW: cannot find substituent directory) created by
- […]
- 12:49 PM Ticket #4243 (mlp command does not work on volume surface) created by
- […]
Feb 12, 2021:
- 11:58 AM Ticket #3757 (Session tries to restore non-StateManager as StateManager) closed by
- can't reproduce: Thank you very much for responding. I suspect this bug was fixed by …
- 9:09 AM Ticket #4242 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Carla, Thanks for reporting this error. It is fixed in the 1.1 …
- 7:39 AM Ticket #4242 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
- 5:00 AM Ticket #4241 (Feature suggestion: combine focused cryo-EM maps) created by
- I tried out the Phenix tool for this …
Feb 11, 2021:
- 5:44 PM Ticket #4240 (Ribbon selection highlighting not responding to atom deletion) closed by
- fixed: Fixed. Atom deletion C++ code was not setting the graphics selection …
- 5:27 PM Ticket #4237 (Ribbons: spline normal computation for straight line) closed by
- not a bug: No problem.
- 3:37 PM ChangeLog edited by
- (diff)
- 3:35 PM Dev2021-2-18 edited by
- (diff)
- 3:35 PM Dev2021-2-18 created by
- 3:33 PM DeveloperMeetings edited by
- (diff)
- 3:32 PM 2021-2-18 created by
- 3:28 PM DeveloperMeetings edited by
- (diff)
- 3:27 PM DeveloperMeetings edited by
- (diff)
- 3:26 PM DeveloperMeetings edited by
- (diff)
- 3:26 PM DeveloperMeetings2020 created by
- 3:25 PM DeveloperMeetings edited by
- (diff)
- 3:24 PM DeveloperMeetings edited by
- (diff)
- 3:22 PM 2021-2-11 edited by
- (diff)
- 3:21 PM 2021-2-11 edited by
- (diff)
- 3:20 PM 2021-2-11 edited by
- (diff)
- 3:20 PM 2021-2-11 edited by
- (diff)
- 3:17 PM 2021-2-11 edited by
- (diff)
- 3:09 PM Ticket #4236 (Volume Eraser: wrapped C/C++ object of type QLineEdit has been deleted) closed by
- duplicate: Fixed long ago. #3115. User is on old ChimeraX 0.94.
- 2:05 PM NeteSOW edited by
- (diff)
- 1:59 PM NeteSOW edited by
- (diff)
- 1:53 PM NeteSOW edited by
- (diff)
- 1:48 PM NeteSOW edited by
- (diff)
- 1:20 PM NeteSOW edited by
- (diff)
- 12:57 PM Ticket #4240 (Ribbon selection highlighting not responding to atom deletion) created by
- […]
- 12:16 PM NeteSOW edited by
- (diff)
- 12:15 PM NeteSOW edited by
- (diff)
- 10:20 AM Ticket #3999 (Toolshed offers to install ISOLDE for wrong Python version then fails) closed by
- fixed: Caveat, not fixed for ChimeraX 1.1. But is fixed for ChimeraX 1.2 and …
- 10:11 AM Ticket #3827 (Slow ChimeraX startup due to Toolshed) closed by
- fixed: Fixed by solution to #3901.
- 9:22 AM Ticket #4239 (Crash with trashed stack) closed by
- can't reproduce
- 9:14 AM Ticket #4234 (Crash (dropping color swatch?)) closed by
- nonchimerax
- 7:45 AM Ticket #4239 (Crash with trashed stack) created by
- […]
- 4:14 AM Ticket #4238 (Selection outline invisible on segmentations) created by
- […]
Feb 10, 2021:
- 10:40 PM Ticket #4170 (Remove unnecessary PyPi packages during build) closed by
- fixed: Reduced build_requirements.txt to Cython, grako, Sphinx. Tested on …
- 5:51 PM Ticket #4237 (Ribbons: spline normal computation for straight line) created by
- […]
- 12:29 PM Ticket #4236 (Volume Eraser: wrapped C/C++ object of type QLineEdit has been deleted) created by
- […]
- 10:49 AM Ticket #4235 (RealSense camera interface pyrealsense2 not available for Python 3.8) created by
- The pyrealsense2 PyPi module used by our RealSense camera tool for …
- 9:28 AM Ticket #4233 (Dual display crash) closed by
- duplicate: Possibly fixed by Qt 5.15
- 8:16 AM ChangeLog edited by
- (diff)
- 6:24 AM Ticket #4234 (Crash (dropping color swatch?)) created by
- […]
- 2:38 AM Ticket #4233 (Dual display crash) created by
- […]
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