Opened 5 years ago
Last modified 4 years ago
#4306 assigned enhancement
Add graphical user interfaces for volumes, surfaces, higher-order structure
Reported by: | Tom Goddard | Owned by: | Tom Goddard |
---|---|---|---|
Priority: | moderate | Milestone: | |
Component: | UI | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
There are many Chimera graphical user interfaces that should probably be implemented in ChimeraX.
This ticket focuses on ones for volume data, surfaces and higher-order structure (Tools menu entries in those categories).
Here are the GUI interfaces not implemented in ChimeraX that are in those Chimera 1.15 menus.
Morph Map
Volume Filter - Gaussian, Median, Bin, Laplacian, Fourier, Scale, Flatten
Values at Atom Positions
Volume Series
Volume Tracer - partially implemented, missing Surfaces, Smooth, Transfer markers, Notes, ...
Surface Capping - subdivision, color, clip offset, disable
Icosahedron Surface
Small Angle X-ray profile - computed with Dina Schneidman FoXS web service
Flatten icosahedron - for making printed virus capsid models
Multiscale Models
Progress
These GUIs have been implemented
Scale Bar
Surface Color - radial/cylinder/height coloring, coloring by value or norm
Crystal Contacts - shows contacting subunits
Unit Cell
Measure Volume and Area
Volume Statistics
Change History (11)
comment:1 by , 5 years ago
Description: | modified (diff) |
---|
comment:2 by , 5 years ago
Description: | modified (diff) |
---|
comment:4 by , 5 years ago
Description: | modified (diff) |
---|
comment:5 by , 5 years ago
Description: | modified (diff) |
---|
comment:6 by , 5 years ago
Description: | modified (diff) |
---|
comment:7 by , 5 years ago
Description: | modified (diff) |
---|
Added unit cell tool, and implemented unitcell command.
comment:11 by , 4 years ago
Description: | modified (diff) |
---|
I added the Map Mean, SD, RMS menu entry and corresponding volume statistics command.