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#4324 closed defect (can't reproduce)
Crash initializing OpenGL (dual display)
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-20.2.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [78998]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [78998]
User ID: 501
Date/Time: 2021-03-03 20:12:24.807 -0500
OS Version: macOS 11.1 (20C69)
Report Version: 12
Bridge OS Version: 5.1 (18P3030)
Anonymous UUID: D252728E-AFBE-4B73-AEF1-687E615061B5
Sleep/Wake UUID: 8E9EC466-8DB7-4728-9846-16D481D4C43B
Time Awake Since Boot: 830000 seconds
Time Since Wake: 27000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x8:
-->
__TEXT 103398000-103399000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2031f462 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff2034d610 pthread_kill + 263
2 libsystem_c.dylib 0x00007fff2022fba3 raise + 26
3 libsystem_platform.dylib 0x00007fff20391d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtGui 0x0000000110cec14d 0x1109bd000 + 3338573
6 QtGui 0x0000000110ceb570 QOpenGLFunctions::initializeOpenGLFunctions() + 16
7 QtGui 0x0000000110ceca96 0x1109bd000 + 3340950
8 QtGui 0x0000000110cedb86 QOpenGLFramebufferObject::QOpenGLFramebufferObject(QSize const&, QOpenGLFramebufferObjectFormat const&) + 230
9 QtQuickWidgets 0x000000011ae6db0a QQuickWidget::createFramebufferObject() + 1338
10 QtQuickWidgets 0x000000011ae6f2b6 QQuickWidget::event(QEvent*) + 758
11 QtWebEngineWidgets 0x0000000113a770e7 0x113a5c000 + 110823
12 QtWidgets 0x000000011041c67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
13 QtWidgets 0x000000011041da82 QApplication::notify(QObject*, QEvent*) + 594
14 QtWidgets.so 0x000000010ffdc3ca sipQApplication::notify(QObject*, QEvent*) + 234
15 QtCore 0x0000000111108324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
16 QtWidgets 0x000000011047a28a 0x11040c000 + 451210
17 QtWidgets 0x000000011047a2c0 0x11040c000 + 451264
18 QtWidgets 0x000000011047a2c0 0x11040c000 + 451264
19 QtWidgets 0x000000011047a2c0 0x11040c000 + 451264
20 QtWidgets 0x000000011047a2c0 0x11040c000 + 451264
21 QtWidgets 0x000000011047a728 0x11040c000 + 452392
22 QtCore 0x000000011113968c QMetaObject::activate(QObject*, int, int, void**) + 3132
23 QtGui 0x00000001109fc5cb QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 75
24 QtGui 0x00000001109fc983 QWindowPrivate::setTopLevelScreen(QScreen*, bool) + 755
25 QtGui 0x0000000110a2371c QScreen::~QScreen() + 444
26 QtGui 0x0000000110a2378e QScreen::~QScreen() + 14
27 QtGui 0x00000001109d66aa QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*) + 58
28 libqcocoa.dylib 0x000000011b0a7fed 0x11b09e000 + 40941
29 libqcocoa.dylib 0x000000011b0a8a44 0x11b09e000 + 43588
30 libqcocoa.dylib 0x000000011b0bd792 0x11b09e000 + 128914
31 libqcocoa.dylib 0x000000011b0b73c2 0x11b09e000 + 103362
32 libqcocoa.dylib 0x000000011b0b6e4b 0x11b09e000 + 101963
33 QtGui 0x00000001109fd70c QWindowPrivate::create(bool, unsigned long long) + 140
34 QtGui 0x00000001109fc978 QWindowPrivate::setTopLevelScreen(QScreen*, bool) + 744
35 QtGui 0x0000000110a2371c QScreen::~QScreen() + 444
36 QtGui 0x0000000110a2378e QScreen::~QScreen() + 14
37 QtGui 0x00000001109d66aa QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*) + 58
38 libqcocoa.dylib 0x000000011b0a7fed 0x11b09e000 + 40941
39 com.apple.Foundation 0x00007fff211a6d6b -[__NSObserver _doit:] + 287
40 com.apple.CoreFoundation 0x00007fff2043afec __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
41 com.apple.CoreFoundation 0x00007fff204d689b ___CFXRegistrationPost_block_invoke + 49
42 com.apple.CoreFoundation 0x00007fff204d680f _CFXRegistrationPost + 454
43 com.apple.CoreFoundation 0x00007fff2040bbde _CFXNotificationPost + 723
44 com.apple.Foundation 0x00007fff2117aabe -[NSNotificationCenter postNotificationName:object:userInfo:] + 59
45 com.apple.AppKit 0x00007fff23787bd9 ___NSApplicationReactToScreenInvalidation_block_invoke + 997
46 com.apple.AppKit 0x00007fff2378754e _NSApplicationReactToScreenInvalidation + 129
47 com.apple.AppKit 0x00007fff23787774 -[NSApplication(ScreenHandling) _reactToDisplayChanges:] + 371
48 com.apple.AppKit 0x00007fff233508ae _NSCGSDisplayConfigurationUpdateAndInvokeObservers + 441
49 com.apple.AppKit 0x00007fff23350bcb _NSCGSDisplayConfigurationDidReconfigureNotificationHandler + 287
50 com.apple.SkyLight 0x00007fff24bcbf69 (anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*) + 1071
51 com.apple.SkyLight 0x00007fff24e6ddf8 CGSDatagramReadStream::dispatchMainQueueDatagrams() + 202
52 com.apple.SkyLight 0x00007fff24e6dd1f invocation function for block in CGSDatagramReadStream::mainQueueWakeup() + 18
53 libdispatch.dylib 0x00007fff201a15dd _dispatch_call_block_and_release + 12
54 libdispatch.dylib 0x00007fff201a27c7 _dispatch_client_callout + 8
55 libdispatch.dylib 0x00007fff201aeb86 _dispatch_main_queue_callback_4CF + 940
56 com.apple.CoreFoundation 0x00007fff20482970 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 9
57 com.apple.CoreFoundation 0x00007fff20444852 __CFRunLoopRun + 2731
58 com.apple.CoreFoundation 0x00007fff204436ce CFRunLoopRunSpecific + 563
59 com.apple.HIToolbox 0x00007fff286c86d0 RunCurrentEventLoopInMode + 292
60 com.apple.HIToolbox 0x00007fff286c84cc ReceiveNextEventCommon + 709
61 com.apple.HIToolbox 0x00007fff286c81ef _BlockUntilNextEventMatchingListInModeWithFilter + 64
62 com.apple.AppKit 0x00007fff22c60de9 _DPSNextEvent + 883
63 com.apple.AppKit 0x00007fff22c5f5af -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1366
64 com.apple.AppKit 0x00007fff22c51b0a -[NSApplication run] + 586
65 libqcocoa.dylib 0x000000011b0d3de3 0x11b09e000 + 220643
66 QtCore 0x000000011110393f QEventLoop::exec(QFlags) + 431
67 QtCore 0x0000000111108932 QCoreApplication::exec() + 130
68 QtWidgets.so 0x00000001100cb7d2 meth_QApplication_exec_(_object*, _object*) + 82
69 org.python.python 0x00000001033c5382 _PyMethodDef_RawFastCallKeywords + 226
70 org.python.python 0x00000001033c48b9 _PyCFunction_FastCallKeywords + 41
71 org.python.python 0x0000000103499b60 call_function + 656
72 org.python.python 0x0000000103496817 _PyEval_EvalFrameDefault + 26567
73 org.python.python 0x00000001033c4d61 function_code_fastcall + 177
74 org.python.python 0x0000000103499bd4 call_function + 772
75 org.python.python 0x0000000103496817 _PyEval_EvalFrameDefault + 26567
76 org.python.python 0x000000010349aa2c _PyEval_EvalCodeWithName + 3276
77 org.python.python 0x00000001033c4879 _PyFunction_FastCallKeywords + 217
78 org.python.python 0x0000000103499bd4 call_function + 772
79 org.python.python 0x00000001034968ae _PyEval_EvalFrameDefault + 26718
80 org.python.python 0x000000010349aa2c _PyEval_EvalCodeWithName + 3276
81 org.python.python 0x000000010348ffb0 PyEval_EvalCode + 48
82 org.python.python 0x000000010348d547 builtin_exec + 583
83 org.python.python 0x00000001033c552d _PyMethodDef_RawFastCallKeywords + 653
84 org.python.python 0x00000001033c48b9 _PyCFunction_FastCallKeywords + 41
85 org.python.python 0x0000000103499b60 call_function + 656
86 org.python.python 0x00000001034968ae _PyEval_EvalFrameDefault + 26718
87 org.python.python 0x000000010349aa2c _PyEval_EvalCodeWithName + 3276
88 org.python.python 0x00000001033c4879 _PyFunction_FastCallKeywords + 217
89 org.python.python 0x0000000103499bd4 call_function + 772
90 org.python.python 0x00000001034968ae _PyEval_EvalFrameDefault + 26718
91 org.python.python 0x000000010349aa2c _PyEval_EvalCodeWithName + 3276
92 org.python.python 0x00000001033c4377 _PyFunction_FastCallDict + 455
93 org.python.python 0x00000001034f4af3 pymain_run_module + 147
94 org.python.python 0x00000001034f3bdc pymain_main + 5900
95 org.python.python 0x00000001034f24c3 Py_Main + 51
96 edu.ucsf.cgl.ChimeraX 0x0000000103398dc8 main + 120
97 libdyld.dylib 0x00007fff20368621 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2031b8e2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2034de6f _pthread_cond_wait + 1254
2 libopenblasp-r0.3.7.dylib 0x0000000104de9c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff2031b8e2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2034de6f _pthread_cond_wait + 1254
2 libopenblasp-r0.3.7.dylib 0x0000000104de9c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff2031b8e2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2034de6f _pthread_cond_wait + 1254
2 libopenblasp-r0.3.7.dylib 0x0000000104de9c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff20445bf7 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff204442ca __CFRunLoopRun + 1315
4 com.apple.CoreFoundation 0x00007fff204436ce CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22de6c16 _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115bfa05d 0x113aa4000 + 34955357
5 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff2031d7e2 kevent + 10
1 QtWebEngineCore 0x0000000115f079a9 0x113aa4000 + 38156713
2 QtWebEngineCore 0x0000000115f04cbd 0x113aa4000 + 38145213
3 QtWebEngineCore 0x0000000115cbbcdc 0x113aa4000 + 35749084
4 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
5 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
6 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff2031d7e2 kevent + 10
1 QtWebEngineCore 0x0000000115f079a9 0x113aa4000 + 38156713
2 QtWebEngineCore 0x0000000115f04cbd 0x113aa4000 + 38145213
3 QtWebEngineCore 0x0000000115cbbcc4 0x113aa4000 + 35749060
4 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
5 QtWebEngineCore 0x0000000115c64a74 0x113aa4000 + 35392116
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c46421 0x113aa4000 + 35267617
4 QtWebEngineCore 0x0000000115c5dd28 0x113aa4000 + 35364136
5 QtWebEngineCore 0x0000000115c5e65b 0x113aa4000 + 35366491
6 QtWebEngineCore 0x0000000115c5e2c4 0x113aa4000 + 35365572
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c46421 0x113aa4000 + 35267617
4 QtWebEngineCore 0x0000000115c5dd28 0x113aa4000 + 35364136
5 QtWebEngineCore 0x0000000115c5e65b 0x113aa4000 + 35366491
6 QtWebEngineCore 0x0000000115c5e2c4 0x113aa4000 + 35365572
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c46421 0x113aa4000 + 35267617
4 QtWebEngineCore 0x0000000115c5dd28 0x113aa4000 + 35364136
5 QtWebEngineCore 0x0000000115c5e65b 0x113aa4000 + 35366491
6 QtWebEngineCore 0x0000000115c5e234 0x113aa4000 + 35365428
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c46421 0x113aa4000 + 35267617
4 QtWebEngineCore 0x0000000115c5dd28 0x113aa4000 + 35364136
5 QtWebEngineCore 0x0000000115c5e65b 0x113aa4000 + 35366491
6 QtWebEngineCore 0x0000000115c5e234 0x113aa4000 + 35365428
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2031d7e2 kevent + 10
1 QtWebEngineCore 0x0000000115f079a9 0x113aa4000 + 38156713
2 QtWebEngineCore 0x0000000115f04cbd 0x113aa4000 + 38145213
3 QtWebEngineCore 0x0000000115cbbcc4 0x113aa4000 + 35749060
4 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
5 QtWebEngineCore 0x0000000115591fe4 0x113aa4000 + 28237796
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115c5dd1a 0x113aa4000 + 35364122
5 QtWebEngineCore 0x0000000115c5e3bf 0x113aa4000 + 35365823
6 QtWebEngineCore 0x0000000115c5e264 0x113aa4000 + 35365476
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 14:: CompositorTileWorker1/72451
0 libsystem_kernel.dylib 0x00007fff2031b8e2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2034de6f _pthread_cond_wait + 1254
2 QtWebEngineCore 0x0000000115cb3fa8 0x113aa4000 + 35717032
3 QtWebEngineCore 0x0000000116c3a4c8 0x113aa4000 + 51995848
4 QtWebEngineCore 0x0000000115c74694 0x113aa4000 + 35456660
5 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
6 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115bfa05d 0x113aa4000 + 34955357
5 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115bfa05d 0x113aa4000 + 34955357
5 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 17:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115bfa052 0x113aa4000 + 34955346
4 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
5 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
6 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2031d7e2 kevent + 10
1 QtWebEngineCore 0x0000000115f079a9 0x113aa4000 + 38156713
2 QtWebEngineCore 0x0000000115f04cbd 0x113aa4000 + 38145213
3 QtWebEngineCore 0x0000000115cbbcdc 0x113aa4000 + 35749084
4 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
5 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
6 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
7 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115c5dd1a 0x113aa4000 + 35364122
5 QtWebEngineCore 0x0000000115c5e65b 0x113aa4000 + 35366491
6 QtWebEngineCore 0x0000000115c5e324 0x113aa4000 + 35365668
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff20318e7e mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203191f0 mach_msg + 60
2 QtWebEngineCore 0x0000000115c4632d 0x113aa4000 + 35267373
3 QtWebEngineCore 0x0000000115c4622f 0x113aa4000 + 35267119
4 QtWebEngineCore 0x0000000115bfa05d 0x113aa4000 + 34955357
5 QtWebEngineCore 0x0000000115c23085 0x113aa4000 + 35123333
6 QtWebEngineCore 0x0000000115c759bc 0x113aa4000 + 35461564
7 QtWebEngineCore 0x0000000115cb5717 0x113aa4000 + 35723031
8 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 21:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff2031b8e2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff2034de6f _pthread_cond_wait + 1254
2 QtCore 0x0000000110f488ab 0x110f1e000 + 174251
3 QtCore 0x0000000110f4880c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x0000000110647762 0x11040c000 + 2340706
5 QtCore 0x0000000110f400b3 0x110f1e000 + 139443
6 libsystem_pthread.dylib 0x00007fff2034d950 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2034947b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 29:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 35:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 36:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 37:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 38:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 39:
0 libsystem_pthread.dylib 0x00007fff20349458 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000104469e00 rcx: 0x00007f9fdee77a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f9fdee77a80 rsp: 0x00007f9fdee77a58
r8: 0x00007f9fdee77f48 r9: 0xc43ab0b388d78a53 r10: 0x0000000104469e00 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007ffeec862d00 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2031f462 rfl: 0x0000000000000246 cr2: 0x000000010443c0b0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
38 00 48 85 c0 74 12 48-8b 00 48 85 c0 74 1c 48 8.H..t.H..H..t.H
8b 00 48 83 c4 08 5b 5d-c3 31 f6 48 89 df e8 b7 ..H...[].1.H....
27 38 00 48 8b 00 48 85-c0 75 e4 31 c0 48 83 c4 '8.H..H..u.1.H..
08 5b 5d c3 0f 1f 84 00-00 00 00 00 55 48 89 e5 .[].........UH..
48 8b 47 08 48 8b 80 b0-00 00 00 48 8b 4e 08 48 H.G.H......H.N.H
3b 81 b0 00 00 00 0f 94-c0 5d c3 90 55 48 89 e5 ;........]..UH..
[48]8b 47 08 48 8b 80 b0-00 00 00 5d c3 66 66 66 H.G.H......].fff /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
0x1033a1000 - 0x10359cfff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python
0x10391d000 - 0x10391efff +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so
0x1039e7000 - 0x1039eafff +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so
0x1039f4000 - 0x103a08fff +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libz.1.2.11.dylib
0x103a52000 - 0x103a53fff +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so
0x103a5c000 - 0x103a5ffff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so
0x103a6a000 - 0x103a6afff +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so
0x103ab2000 - 0x103ab7fff +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so
0x103ac3000 - 0x103ac5fff +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so
0x103acf000 - 0x103b2cfff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libssl.1.1.dylib
0x103b5b000 - 0x103d22fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libcrypto.1.1.dylib
0x103dbb000 - 0x103dc0fff +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so
0x103dca000 - 0x103ddafff +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so
0x103de5000 - 0x103de5fff +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so
0x103ded000 - 0x103deefff +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so
0x103eb6000 - 0x103ebcfff +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so
0x103f05000 - 0x103f12fff +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so
0x103f28000 - 0x103f31fff +_socket.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so
0x103f83000 - 0x103f86fff +select.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so
0x103f91000 - 0x103f95fff +_struct.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so
0x103fa3000 - 0x103fa7fff +binascii.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so
0x1040b0000 - 0x1040befff +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
0x10410e000 - 0x10410efff +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so
0x104116000 - 0x104154fff +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x1041b8000 - 0x1041e5fff +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so
0x1041fd000 - 0x1041fefff +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
0x1042c7000 - 0x1042c8fff +_posixsubprocess.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so
0x104310000 - 0x104322fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so
0x104373000 - 0x104376fff +_csv.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so
0x104382000 - 0x104383fff +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so
0x10438b000 - 0x10438bfff +_arrays.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/arrays/_arrays.cpython-37m-darwin.so
0x104392000 - 0x10442dfff dyld (832.7.1) /usr/lib/dyld
0x10462a000 - 0x10498dfff +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so
0x104ab3000 - 0x10851efff +libopenblasp-r0.3.7.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib
0x108828000 - 0x10893ffff +libgfortran.3.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x1089ad000 - 0x1089e3fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x1089f7000 - 0x108a0cfff +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10eb9c000 - 0x10eba9fff +_multiarray_tests.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so
0x10ebbf000 - 0x10ebd1fff +_ctypes.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so
0x10ec67000 - 0x10ec80fff +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
0x10ed54000 - 0x10ed65fff +_pocketfft_internal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/fft/_pocketfft_internal.cpython-37m-darwin.so
0x10edee000 - 0x10ee59fff +mtrand.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/mtrand.cpython-37m-darwin.so
0x10eeb4000 - 0x10eed1fff +_bit_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bit_generator.cpython-37m-darwin.so
0x10eef2000 - 0x10ef21fff +_common.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_common.cpython-37m-darwin.so
0x10ef3c000 - 0x10ef90fff +_bounded_integers.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bounded_integers.cpython-37m-darwin.so
0x10efb8000 - 0x10efcafff +_mt19937.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_mt19937.cpython-37m-darwin.so
0x10efdb000 - 0x10efe7fff +_philox.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_philox.cpython-37m-darwin.so
0x10eff7000 - 0x10f001fff +_pcg64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_pcg64.cpython-37m-darwin.so
0x10f011000 - 0x10f018fff +_sfc64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_sfc64.cpython-37m-darwin.so
0x10f027000 - 0x10f0a9fff +_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_generator.cpython-37m-darwin.so
0x10f209000 - 0x10f20afff +_appdirs.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_appdirs.so
0x10f212000 - 0x10f213fff +libappdirs.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libappdirs.dylib
0x10f21b000 - 0x10f23cfff +_serialize.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_serialize.cpython-37m-darwin.so
0x10f25c000 - 0x10f274fff +_cmsgpack.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/msgpack/_cmsgpack.cpython-37m-darwin.so
0x10f2cd000 - 0x10f328fff +_imaging.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PIL/_imaging.cpython-37m-darwin.so
0x10f357000 - 0x10f38ffff +libjpeg.9.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libjpeg.9.dylib
0x10f3a5000 - 0x10f41bfff +libopenjp2.2.3.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libopenjp2.2.3.1.dylib
0x10f42c000 - 0x10f447fff +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libz.1.2.11.dylib
0x10f451000 - 0x10f4e0fff +libtiff.5.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libtiff.5.dylib
0x10f4f9000 - 0x10f512fff +libxcb.1.dylib (3) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libxcb.1.dylib
0x10f529000 - 0x10f55afff +liblzma.5.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/liblzma.5.dylib
0x10f567000 - 0x10f568fff +libXau.6.dylib (7) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libXau.6.dylib
0x10f570000 - 0x10f573fff +libXdmcp.6.dylib (7) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/PIL/.dylibs/libXdmcp.6.dylib
0x10f57b000 - 0x10f593fff +tinyarray.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/tinyarray.cpython-37m-darwin.so
0x10f6f0000 - 0x10f6f8fff +errorchecker.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/errorchecker.cpython-37m-darwin.so
0x10f707000 - 0x10f732fff +arraydatatype.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/arraydatatype.cpython-37m-darwin.so
0x10f756000 - 0x10f788fff +wrapper.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/wrapper.cpython-37m-darwin.so
0x10f7f1000 - 0x10f7fafff +formathandler.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/formathandler.cpython-37m-darwin.so
0x10f80a000 - 0x10f811fff +latebind.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/latebind.cpython-37m-darwin.so
0x10fbe0000 - 0x10fbf9fff +vbo.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/vbo.cpython-37m-darwin.so
0x10fc53000 - 0x10fcfdfff +libarrays.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10fd21000 - 0x10fd3cfff +_geometry.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/geometry/_geometry.cpython-37m-darwin.so
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External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2297
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 108305843
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 34.8M 14
CG image 156K 14
CoreAnimation 336K 13
CoreGraphics 16K 3
CoreServices 624K 2
CoreUI image data 3240K 26
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 583.3M 492
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 156K 39
Stack 147.8M 40
Stack Guard 56.0M 1
VM_ALLOCATE 217.8M 468
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__CTF 759 1
__DATA 28.9M 580
__DATA_CONST 22.2M 253
__DATA_DIRTY 1144K 157
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 513.7M 144
__OBJC_RO 60.5M 1
__OBJC_RW 2452K 2
__TEXT 539.5M 556
__UNICODE 588K 1
mapped file 351.0M 71
shared memory 48K 6
=========== ======= =======
TOTAL 2.8G 2910
TOTAL, minus reserved VM space 2.5G 2910
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "/Users/zhesang/Dropbox/RBD_Nb_structures (1)/Manuscript/Figures/Figure
> 6/Figures_Zhe/RBD(Conservations)_Nbs.cxs"
Log from Wed Mar 3 18:17:41 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/zhesang/Dropbox/RBD_Nb_structures (1)/Manuscript/Figures/Figure
> 6/Figures_Zhe/RBD_consurf.pdb"
Summary of feedback from opening /Users/zhesang/Dropbox/RBD_Nb_structures
(1)/Manuscript/Figures/Figure 6/Figures_Zhe/RBD_consurf.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK Selection 'chain E and res...from 333 to 527'
Chain information for RBD_consurf.pdb #1
---
Chain | Description
E | No description available
> show surfaces
> color bfactor
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> set bgColor white
> lighting soft
> graphics silhouettes true
> lighting flat
> transparency 50
> transparency 0
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> graphics silhouettes false
> lighting soft
> graphics silhouettes true
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb17.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb17.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb17 Selection 'protein chain R resnum 333 to 526' + Nb17
Selection 'protein chain A resnum 1 to 118'
Chain information for annotated_Nb17.pdb #2
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb20.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb20.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup 7JVB Selection 'chain A resnum 333 to 526' + 7JVB Selection
'chain C resnum 1 to 116'
Chain information for annotated_Nb20.pdb #3
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb21.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb21.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb21 Selection 'protein chain E resnum 333 to 526' + Nb21
Selection 'protein chain N resnum 1 to 116'
Chain information for annotated_Nb21.pdb #4
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb34.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb34.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb34 Selection 'chain H resnum 333 to 526' + Nb34 Selection
'chain A resnum 1 to 125'
Chain information for annotated_Nb34.pdb #5
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb36.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb36.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb36 Selection 'protein chain B resnum 333 to 526' + Nb36
Selection 'protein chain H resnum 1 to 122'
Chain information for annotated_Nb36.pdb #6
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb93.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb93.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb93 Selection 'protein chain B resnum 333 to 526' + Nb93
Selection 'protein chain H resnum 3 to 127'
Chain information for annotated_Nb93.pdb #7
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb95.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb95.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb95 Selection 'chain H resnum 333 to 526' + Nb95 Selection
'chain A resnum 1 to 125'
Chain information for annotated_Nb95.pdb #8
---
Chain | Description
A | No description available
H | No description available
> open /Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb105.pdb
Summary of feedback from opening
/Users/zhesang/Dropbox/RBD_Nb_folder/Nbs/annotated_Nb105.pdb
---
warning | Ignored bad PDB record found on line 1
REMARK AtomGroup Nb105 Selection 'protein chain R resnum 333 to 526' + Nb105
Selection 'protein chain B resnum 1 to 125'
Chain information for annotated_Nb105.pdb #9
---
Chain | Description
A | No description available
H | No description available
> matchmaker #2-9 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb17.pdb, chain A
(#2), sequence alignment score = 941.1
RMSD between 163 pruned atom pairs is 1.088 angstroms; (across all 194 pairs:
1.673)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb20.pdb, chain A
(#3), sequence alignment score = 935.8
RMSD between 186 pruned atom pairs is 0.857 angstroms; (across all 193 pairs:
0.990)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb21.pdb, chain A
(#4), sequence alignment score = 880.4
RMSD between 176 pruned atom pairs is 0.959 angstroms; (across all 192 pairs:
1.233)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb34.pdb, chain A
(#5), sequence alignment score = 888.4
RMSD between 155 pruned atom pairs is 1.162 angstroms; (across all 193 pairs:
1.718)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb36.pdb, chain A
(#6), sequence alignment score = 900.3
RMSD between 102 pruned atom pairs is 1.285 angstroms; (across all 194 pairs:
2.463)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb93.pdb, chain A
(#7), sequence alignment score = 982.5
RMSD between 191 pruned atom pairs is 0.399 angstroms; (across all 194 pairs:
0.521)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb95.pdb, chain A
(#8), sequence alignment score = 913
RMSD between 176 pruned atom pairs is 1.033 angstroms; (across all 193 pairs:
1.347)
Matchmaker RBD_consurf.pdb, chain E (#1) with annotated_Nb105.pdb, chain A
(#9), sequence alignment score = 917.2
RMSD between 145 pruned atom pairs is 1.079 angstroms; (across all 193 pairs:
2.155)
> select #2-9/A
15104 atoms, 15442 bonds, 2 pseudobonds, 1546 residues, 9 models selected
> hide sel cartoons
> hide #3 models
> select #3
2351 atoms, 2406 bonds, 309 residues, 1 model selected
> ~select #3
Nothing selected
> dssp
> color #2 slate blue
> color #3 royal blue
> color #4 royal blue
> color #5 rteal
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword
> color #5 teal
> color #6 hot pink
> color #7 pale green
> hide #7 models
> color #8 rosy brown
> color #105 wheat
> color #9 wheat
> dssp
> lighting flat
> lighting soft
> color bfactor #1 palette gray
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette brown
Fetching compressed palette brown from
http://www.colourlovers.com/api/palettes?keywords=brown&format=json&numResults=100
Could not find palette brown at COLOURlovers.com using keyword search
> color bfactor #1 palette gray_r
Fetching compressed palette gray_r from
http://www.colourlovers.com/api/palettes?keywords=gray_r&format=json&numResults=100
Could not find palette gray_r at COLOURlovers.com using keyword search
> color bfactor #1 palette gray
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette r_gray
Fetching compressed palette r_gray from
http://www.colourlovers.com/api/palettes?keywords=r_gray&format=json&numResults=100
Could not find palette r_gray at COLOURlovers.com using keyword search
> color bfactor #1 palette cool charcoal slate
Fetching compressed palette cool from
http://www.colourlovers.com/api/palettes?keywords=cool&format=json&numResults=100
Could not find palette cool at COLOURlovers.com using keyword search
> color bfactor #1 palette The Firebird
Fetching compressed palette The from
http://www.colourlovers.com/api/palettes?keywords=The&format=json&numResults=100
Could not find palette The at COLOURlovers.com using keyword search
> color bfactor #1 palette nonsubtle
Fetching compressed palette nonsubtle from
http://www.colourlovers.com/api/palettes?keywords=nonsubtle&format=json&numResults=100
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette "2 Bit Greyscacle"
Fetching compressed palette 2 Bit Greyscacle from
http://www.colourlovers.com/api/palettes?keywords=2%20Bit%20Greyscacle&format=json&numResults=100
Could not find palette 2 Bit Greyscacle at COLOURlovers.com using keyword
search
> color bfactor #1 palette Inundate
Fetching compressed palette Inundate from
http://www.colourlovers.com/api/palettes?keywords=Inundate&format=json&numResults=100
Could not find palette Inundate at COLOURlovers.com using keyword search
> color bfactor #1 palette Inundate
Could not find palette Inundate at COLOURlovers.com using keyword search
> color bfactor #1 palette greyscale
Fetching compressed palette greyscale from
http://www.colourlovers.com/api/palettes?keywords=greyscale&format=json&numResults=100
Found 11 ColourLover palettes with name "greyscale", using palette id 96749 by
author emile with most views (774). To choose a different one use "name by
author" or id number.
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette Greyscale
Found 20 ColourLover palettes with name "Greyscale", using palette id 12271 by
author geeksmakemehot with most views (1065). To choose a different one use
"name by author" or id number.
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette lipophiiliicity
Fetching compressed palette lipophiiliicity from
http://www.colourlovers.com/api/palettes?keywords=lipophiiliicity&format=json&numResults=100
Could not find palette lipophiiliicity at COLOURlovers.com using keyword
search
> color bfactor #1 palette lipophilicity
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette cyan-gray-maroon
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette cyanmaroon
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette gray
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> color bfactor #1 palette ^gray
1536 atoms, 194 residues, 1 surfaces, atom bfactor range -0.75 to 3.47
> save "/Users/zhesang/Dropbox/RBD_Nb_structures (1)/Manuscript/Figures/Figure
> 6/Figures_Zhe/RBD(Conservations)_Nbs.cxs"
opened ChimeraX session
OpenGL version: 4.1 INTEL-16.1.7
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1554.60.15.0.0 (iBridge: 18.16.13030.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.1 (20C69)
Kernel Version: Darwin 20.2.0
Time since boot: 16 days 12:48
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2715Q:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 54KKD7BG100L
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: Thunderbolt/DisplayPort
Automatically Adjust Brightness: Yes
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (3)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash initializing OpenGL (dual display) |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
comment:3 by , 5 years ago
Looks like maybe the user went from two screens to one screen
23 QtGui 0x00000001109fc5cb QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 75
24 QtGui 0x00000001109fc983 QWindowPrivate::setTopLevelScreen(QScreen*, bool) + 755
25 QtGui 0x0000000110a2371c QScreen::~QScreen() + 444
Maybe the unplugged an external screen or closed the laptop screen, and maybe ChimeraX had to move from one screen to the other. I am pretty sure I tested this a few months ago and did not get any crashes. So some other special circumstances are required for the crash. Qt 5.12 used in this report. Problem could be fixed in Qt 5.15. Wait for Qt 5.15 bug report before doing further testing to reproduce it.
Note:
See TracTickets
for help on using tickets.
Kind of weird. There's a fairly long log at the end, so clearly this crash doesn't happen all the time since the user was able to do a lot of work before bothering to submit the bug report!