![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Aug 6, 2020:
- 7:48 PM Ticket #3608 (wrapped C/C++ object of type SaveOptionsWidget has been deleted) created by
- […]
- 7:13 PM Ticket #859 (silhouettes on top of labels) closed by
- fixed: This was fixed maybe a year ago, possibly more. On top labels are now …
- 5:12 PM Ticket #2839 (update_buffer_data: cannot allocate huge array) closed by
- not a bug: Nothing we can do about insufficient memory. I think the error …
- 5:01 PM Ticket #2932 (View transition "jumpy") closed by
- fixed: I tried this again in current ChimeraX daily build and it is perfectly …
- 2:11 PM Ticket #3331 (Installation error) closed by
- fixed
- 2:05 PM Ticket #3597 (Can't install bundles with circular dependencies) closed by
- fixed: This is fixed by #3598.
- 1:16 PM ChangeLog edited by
- (diff)
- 1:07 PM Ticket #3598 (make install of bundle gives "No bundles were installed") closed by
- fixed: I just checked in a fix for this. I kept using the new resolver, but …
- 12:05 PM Ticket #11 (Add dome fisheye rendering) closed by
- fixed: Added dome camera january 2020.
- 11:25 AM Ticket #3606 (ChimeraX not running on cluster) closed by
- nonchimerax: If at all possible you should move your data files to your local …
- 9:26 AM Ticket #3603 (Nucleotides ladder: subtracting Nones) closed by
- fixed: Please update your version of ChimeraX to fix this bug. The only …
- 9:14 AM Ticket #3607 (Help tool not in UI window list) closed by
- can't reproduce
- 9:09 AM Ticket #3604 ('open' syntax problem) closed by
- not a bug: Hi Santiago, The "coord true" argument is only legal when opening a …
- 9:04 AM Ticket #3607 (Help tool not in UI window list) created by
- […]
- 8:10 AM Ticket #3606 (ChimeraX not running on cluster) created by
- […]
- 4:04 AM Ticket #3605 (wrapped C/C++ object of type SideViewCanvas has been deleted) created by
- […]
Aug 5, 2020:
- 8:46 PM Ticket #3604 ('open' syntax problem) created by
- […]
- 7:10 PM Ticket #3342 (Segger: crash selecting segments) closed by
- can't reproduce: Appears to be an infinite recursion loop but cannot reproduce.
- 7:07 PM Ticket #3417 (labels don't work in headless mode) closed by
- fixed: Greg fixed this using Qt offscreen platform. Begin forwarded message: …
- 7:00 PM Ticket #3558 (Session restore: Tried to add model with the same id as another model) closed by
- can't reproduce: No response from reporter. Can't reproduce.
- 6:59 PM Ticket #3603 (Nucleotides ladder: subtracting Nones) created by
- […]
- 6:53 PM Ticket #3107 (Enable depth cue with mesh lighting off) closed by
- fixed: Fixed. Unlit volume meshes now have depth cue. Now …
- 6:52 PM Ticket #2738 (Make volume mesh_lighting = False keep depth cueing) closed by
- fixed: Fixed. Unlit volume meshes now have depth cue. Now …
- 6:51 PM Ticket #1652 (Allow depth cue on unlit meshes) closed by
- fixed: Fixed. Unlit meshes now have depth cue.
- 5:31 PM Ticket #3602 (Crash drawing Qt interface) created by
- […]
- 5:00 PM Ticket #3226 (Make mesh surfaces not cast shadows) closed by
- fixed: Fixed. Meshes no longer cast shadows (single or ambient) by default. …
- 4:53 PM Ticket #1243 (Allow ambient shadowing on transparent surfaces) closed by
- fixed: There are settings to control this. The command "material …
- 4:47 PM Ticket #1748 (Extend solid rendering brightness curve) closed by
- fixed: The brightness curve was made to automatically extend to the right …
- 2:12 PM Ticket #3601 (_show_selected_unparameterised_residue: not enough values to unpack) created by
- […]
- 2:08 PM Ticket #3600 (Closing Toolshed browser window corrupts download) created by
- […]
- 1:29 PM Ticket #975 (Add "select" option to hbonds command) closed by
- fixed: Okay, added the option to the GUI as suggested.
- 12:52 PM Ticket #3599 (Sequence: 'Alignment' object has no attribute '_headers') created by
- […]
- 11:22 AM Ticket #3598 (make install of bundle gives "No bundles were installed") created by
- […]
- 11:02 AM Ticket #3597 (Can't install bundles with circular dependencies) created by
- […]
- 9:16 AM Ticket #3596 (Implement Coulombic surface coloring) created by
- As per summary, also optionally generate a volume data set
- 8:39 AM Ticket #3595 (commas in hierarchy parsing) closed by
- not a bug: Hi Tristan, That is just how hierarchy atom spec paring works. …
- 7:47 AM Ticket #3595 (commas in hierarchy parsing) created by
- […]
Aug 4, 2020:
- 6:54 PM Ticket #2166 (Don't cap clipped volume meshes) closed by
- fixed: Fixed. I made mesh style surfaces not show clip caps for all models. …
- 4:37 PM Ticket #3594 (hiding model with distance measurement leaves distance label displayed) closed by
- fixed: Fixed. Labels on pseudobonds did not notice when the structure(s) …
- 3:31 PM Ticket #3594 (hiding model with distance measurement leaves distance label displayed) created by
- Example: open 1zik show :tyr dist @oh hide #1 models This is a …
- 2:15 PM Ticket #3515 (Fetch biological assemblies from PDB for NIH 3D) closed by
- fixed
- 11:22 AM Ticket #3593 (stepper.step_forward: index is out of bounds) created by
- […]
- 10:42 AM Ticket #3592 (Template mismatch errors) closed by
- fixed: Had a quick look at Kartik's coordinates. All of the issues in the …
- 8:39 AM Ticket #3592 (Template mismatch errors) created by
- […]
Aug 3, 2020:
- 10:36 PM Ticket #3501 (Problem saving map: No such file or directory) closed by
- can't reproduce: If this os.getcwd() error is reported again I'll add some code on …
- 10:29 PM Ticket #3521 (Many graphics errors) closed by
- fixed: I have a new theory about this error. It is hard to get an out of …
- 10:07 PM Ticket #3503 (Main graphics not shown when window maximized) closed by
- can't reproduce: No response from reporter.
- 9:55 PM Ticket #3478 (Could not get OpenGL vendor string) closed by
- fixed: Made OpenGL code not give further errors after reporting that the …
- 4:16 PM Ticket #3581 (Label position asked for before label drawn (and various other errors)) closed by
- fixed: Fixed. The mouse mode for moving a 2D label gave an error when some …
- 4:05 PM Ticket #3591 (ImportError: cannot import name 'normalize_vector' from 'chimerax.core') closed by
- fixed: Fixed. Wrong import statements used when running shape ribbon with …
- 3:31 PM Ticket #3584 (Spurious H added to nucleic P) closed by
- fixed
- 3:01 PM Ticket #3591 (ImportError: cannot import name 'normalize_vector' from 'chimerax.core') created by
- […]
- 2:19 PM Ticket #3589 (Saving instance in session) closed by
- not a bug: For this case, you need to inherit from chimerax.state.StateManager …
- 1:54 PM Ticket #3587 (Leave hydrogens intact if atom modification impossible) closed by
- fixed
- 1:41 PM Ticket #3590 (Upcoming template-synonym change) created by
- […]
- 12:03 PM Ticket #3588 (Remove deleted files from app) closed by
- not a bug
- 11:02 AM Ticket #3579 (Crash rendering QML scene graph) closed by
- can't reproduce: Another "QML-based" crash -- no idea.
- 10:49 AM Ticket #3577 (ChimeraX Display Problem on Windows 10 for Ryan Talbot) closed by
- can't reproduce: Hi Ryan, Please upgrade to the 1.0 release of ChimeraX. It has …
- 10:46 AM Ticket #3563 (Timeout launching Modeller job) closed by
- fixed: The web services are up now. --Eric
- 10:34 AM Ticket #3589 (Saving instance in session) created by
- […]
- 4:51 AM Ticket #3588 (Remove deleted files from app) created by
- […]
- 4:07 AM Ticket #3587 (Leave hydrogens intact if atom modification impossible) created by
- […]
Aug 2, 2020:
- 9:09 AM Ticket #3586 (Automatic log compacting) created by
- […]
- 8:25 AM Ticket #3585 (AddH: unusual positioning) created by
- […] rna_weird_h.jpg
- 7:14 AM Ticket #3584 (Spurious H added to nucleic P) created by
- […]
- 2:31 AM Ticket #3583 (Better feedback for loading CIF templates) created by
- […] elbow.D3R_cif.001.cif
Aug 1, 2020:
- 10:48 PM Ticket #3582 (--offscreen does not work on Linux (or Mac, or Windows)) created by
- […] generate.V1.py
- 2:15 PM ChangeLog edited by
- (diff)
- 12:24 PM Ticket #3581 (Label position asked for before label drawn (and various other errors)) created by
- […]
- 10:16 AM Ticket #3580 (Toolshed uninstall: permission denied: install-timestamp) created by
- […]
- 3:48 AM Ticket #3579 (Crash rendering QML scene graph) created by
- […]
Jul 31, 2020:
- 8:59 PM Ticket #3570 (Morph mismatches protein glycans) closed by
- fixed: Fixed. I investigated how morph is messing up the glycans. According …
- 7:37 PM Ticket #3578 (Clipper: failure in French&Wilson treatment of intensities) created by
- […]
- 6:50 PM Ticket #3573 (Web services down) closed by
- fixed: Hi Meghan, Web services should be working again. --Eric Eric …
- 11:50 AM Ticket #3577 (ChimeraX Display Problem on Windows 10 for Ryan Talbot) created by
- […]
- 11:49 AM Ticket #3576 (Shape tube command color option gives error) closed by
- fixed: Fixed. The usual "if numpy-arrary then" error. Bad, bad numpy.
- 11:34 AM Ticket #3576 (Shape tube command color option gives error) created by
- […]
- 10:14 AM Ticket #3575 (Make format_name optional in bundle_info.xml database fetch provider tag) created by
- The format_name provider tag attribute for fetching database files …
- 9:27 AM Ticket #3574 (Web services down) closed by
- duplicate: Same as the other ticket -- web services unavailable outside UCSF
- 9:20 AM Ticket #3572 (Saving gltf: IndexError: tuple index out of range) closed by
- fixed: Fixed. If any model was undisplayed the saving GLTF format gave this …
- 6:44 AM Ticket #3574 (Web services down) created by
- […]
- 6:44 AM Ticket #3573 (Web services down) created by
- […]
- 6:09 AM Ticket #3572 (Saving gltf: IndexError: tuple index out of range) created by
- […]
- 2:52 AM Ticket #3571 (Periodic cache purging?) created by
- […]
- 1:58 AM Ticket #3568 (OpenCL problem?) closed by
- duplicate: Addressed this in #3566 before reading this one.
Jul 30, 2020:
- 11:56 PM Ticket #3565 (Nucleotides: asking for distance from None) closed by
- duplicate: Same solution as before. Update to ChimeraX 1.0 and this bug will go away.
- 11:53 PM Ticket #3564 (mmcif.find_template_residue() sometimes mistakenly claims template ...) closed by
- fixed: You should expect it to fail sometimes. If the network is slow, then …
- 7:59 PM Ticket #3570 (Morph mismatches protein glycans) created by
- The glycans fly all over the place when morphing between these two …
- 1:59 PM Ticket #3481 (scipy can't import _uarray) closed by
- can't reproduce: This should have been fixed by the newer Visual Studio runtime that …
- 1:41 PM Ticket #3567 (scipy can't import _uarray) closed by
- duplicate: duplicate of #3214 (but see #3481)
- 1:36 PM Ticket #3569 (Problem reading MTZ data: list index out of range) created by
- […]
- 11:55 AM Ticket #3568 (OpenCL problem?) created by
- […]
- 11:23 AM Ticket #3567 (scipy can't import _uarray) created by
- […]
- 11:06 AM Ticket #3566 (OpenMM: No template found for residue) created by
- […]
- 5:38 AM Ticket #3565 (Nucleotides: asking for distance from None) created by
- […]
- 4:05 AM Ticket #3564 (mmcif.find_template_residue() sometimes mistakenly claims template ...) created by
- […]
- 2:03 AM Ticket #3563 (Timeout launching Modeller job) created by
- […]
- 1:10 AM Ticket #3562 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by
- […]
Jul 29, 2020:
- 4:42 PM ChangeLog edited by
- (diff)
- 1:55 PM ChangeLog edited by
- (diff)
- 1:13 PM Ticket #3561 (An invalid name request was made. The name requested cannot be ...) created by
- […]
- 9:47 AM Ticket #3559 (Map fitting: map is None) closed by
- fixed: Fixed. Fit map panel was set to report new correlation values as user …
- 7:01 AM Ticket #3560 (figure 8 camera motion) created by
- […]
Jul 28, 2020:
- 10:34 PM Ticket #3559 (Map fitting: map is None) created by
- […]
- 2:40 PM Ticket #3558 (Session restore: Tried to add model with the same id as another model) created by
- […]
- 11:11 AM Ticket #3555 (Calvacade of GL errors) closed by
- nonchimerax: Framebuffer creation failed. Broken graphics driver. I added code to …
- 10:47 AM ChangeLog edited by
- (diff)
- 8:44 AM Ticket #3557 (Open DICOM via icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by
- duplicate
- 3:25 AM Ticket #3557 (Open DICOM via icon: 'MainWindow' object has no attribute 'folder_open_cb') created by
- […]
- 3:13 AM Ticket #3556 (A problem starting chimerax on Centos7) created by
- […]
Jul 27, 2020:
- 10:12 PM Ticket #3555 (Calvacade of GL errors) created by
- […]
- 7:09 PM Ticket #725 (RFE: allow models to be immune to clipping) closed by
- fixed: Made drag select on clip disabled models work.
- 6:18 PM Ticket #3554 (Update clip caps only when changed so coloring is preserved) created by
- On Jul 27, 2020, at 4:57 PM, Tom Goddard <goddard@…> wrote: …
- 4:00 PM ChangeLog edited by
- (diff)
- 3:43 PM Ticket #3386 (Make header values available as residue attributes) closed by
- fixed: As of tomorrow's build, alignment headers create residue attributes.
- 11:54 AM Ticket #3551 (PromoteAtomSelection._structure is deleted) closed by
- fixed: Fixed. Selection demotion was not checking for deleted structures.
- 11:22 AM Ticket #3550 (Problem saving spin movie / images to "Desktop" (C:\Users\Public\Desktop)) closed by
- not a bug: Saving an image with toolbar snapshot button fails, unable to write to …
- 10:44 AM Ticket #3546 (Save spin movie to desktop: Operation not permitted) closed by
- nonchimerax: Appears you denied permission for ChimeraX to access your Desktop so …
- 10:07 AM Ticket #3553 (FileNotFoundError: os.getcwd() opening recent file on macOS without ...) closed by
- fixed
- 10:03 AM Ticket #3553 (FileNotFoundError: os.getcwd() opening recent file on macOS without ...) created by
- […]
- 10:02 AM Ticket #3549 (Old save-map GUI: 'NoneType' object has no attribute 'id_string') closed by
- fixed: Hi Munmun, This problem is fixed in the ChimeraX 1.0 release. If you …
- 9:21 AM Ticket #3552 ("Install" button needs feedback; downloads slow) created by
- […]
- 6:03 AM Ticket #3551 (PromoteAtomSelection._structure is deleted) created by
- […]
- 5:56 AM Ticket #3550 (Problem saving spin movie / images to "Desktop" (C:\Users\Public\Desktop)) created by
- […]
Jul 26, 2020:
- 12:02 AM Ticket #3549 (Old save-map GUI: 'NoneType' object has no attribute 'id_string') created by
- […]
Jul 25, 2020:
- 1:10 PM Ticket #3548 (Nightly build test errors not reported on Linux) created by
- Appears that nightly build test suite errors are not reported on …
- 12:15 AM Ticket #3397 (ChimeraX: mmcif connectivity lost in some chains; OK in Coot  + PDB ...) closed by
- fixed: GDP isn't broken. GDP's type is "RNA linking", ie., a polymeric …
Jul 24, 2020:
- 11:08 PM Ticket #3396 (Saving mmCIF: 'software' is None) closed by
- duplicate: This is actually a duplicate of #3204 and has been fixed.
- 10:31 PM Ticket #3446 (mmCIF extremely slow when RCSB Ligand-expo site is down) closed by
- fixed: Added negative caching of data files. If a data fetch fails, the …
- 3:40 PM Ticket #3547 (ChimeraX bug report submission) closed by
- fixed: Found it.
- 3:37 PM Ticket #3547 (ChimeraX bug report submission) created by
- […]
- 2:50 PM Ticket #3546 (Save spin movie to desktop: Operation not permitted) created by
- […]
Jul 23, 2020:
- 3:45 PM ChangeLog edited by
- (diff)
- 3:10 PM Ticket #3544 (Better error handling for binary STL?) closed by
- fixed: Fixed. Added reading of ASCII STL files. Also ported Chimera SWC …
- 2:21 PM Ticket #3545 (Problem setting autochain attribute) closed by
- not a bug: Hi Derek, Sorry, but the command even slightly more arcane that what …
- 2:01 PM Ticket #3545 (Problem setting autochain attribute) created by
- […] FinalAlignNearco.cxs
- 9:11 AM Ticket #3543 (ChimeraX bug report submission) closed by
- not a bug: UNK residues are supposed to be in ATOM records, not HETATM records.
- 2:28 AM Ticket #3544 (Better error handling for binary STL?) created by
- […]
- 1:47 AM Ticket #3543 (ChimeraX bug report submission) created by
- […] 6o24_final.pdb
- 12:23 AM Ticket #3263 (problems both saving and restoring nucleotides) closed by
- can't reproduce: Unable to reproduce without session file.
Jul 22, 2020:
- 7:12 PM Ticket #3542 (Copy and paste Log html does not work on Windows) created by
- […]
- 6:30 PM Ticket #3541 (Toolshed needs "Successfully installed" message in browser) created by
- […]
- 2:57 PM Ticket #3357 (Add installed version numbers to the bug reporter) closed by
- fixed: Done.
- 2:43 PM Ticket #3227 (Cannot import _uarray) closed by
- fixed: No response. Internal testing shows that it was fixed.
- 1:23 PM ChangeLog edited by
- (diff)
- 1:23 PM ChangeLog edited by
- (diff)
- 1:22 PM ChangeLog edited by
- (diff)
- 1:21 PM ChangeLog edited by
- (diff)
- 1:12 PM Ticket #1878 (Smarter handling of ATOM/HETATM column 21) closed by
- fixed: Tomorrow's build will have code to read/write two-character chain IDs …
Jul 21, 2020:
- 11:29 PM Ticket #3537 (Problem matching GLYCAM templates) closed by
- duplicate: Addressing in #3538
- 5:33 PM Ticket #3540 (Fetch question) closed by
- not a bug: fetch_file is for fetching data files that ChimeraX caches. web_fetch …
- 5:01 PM Ticket #3540 (Fetch question) created by
- […]
- 2:04 PM Ticket #3532 (Registration error: month must be in 1..12) closed by
- fixed
- 12:21 PM Ticket #3539 (Problems with large de novo mmCIF structure) created by
- […] Tristan_working_edited_Sc_20July20.cif
- 12:05 PM Ticket #3538 (Problem matching GLYCAM templates) created by
- […]
- 12:04 PM Ticket #3537 (Problem matching GLYCAM templates) created by
- […]
- 8:48 AM Ticket #3536 (Graphics driver crash) closed by
- can't reproduce
- 5:59 AM Ticket #3536 (Graphics driver crash) created by
- […]
Jul 20, 2020:
- 2:40 PM Ticket #872 (Add chirality property to atoms) closed by
- fixed: Okay, as of tomorrow chirality is available from a template Atom's …
- 1:12 PM Ticket #3535 (Nucleotides: asking for distance from None) created by
- […]
- 10:27 AM Ticket #3533 (color-by-attr problem) closed by
- fixed: Hi Santiago, This problem was caused by a relatively recent code …
- 10:16 AM Ticket #872 (Add chirality property to atoms) reopened by
- It's taken much (much!) longer for me to get to the point of properly …
- 9:46 AM Ticket #3531 (ChimeraX startup: unsupported locale setting) closed by
- fixed: Hopefully fixed 4 days ago #3306
- 9:40 AM Ticket #3530 (setattr type conflict) closed by
- not a bug: Hi Santiago, Values for attributes created with 'setattr' have to …
- 9:34 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) closed by
- not a bug
- 9:05 AM Ticket #3534 (Parsing complaint about Ligand Expo cif files) created by
- […] core_components.cif
- 7:02 AM Ticket #3533 (color-by-attr problem) created by
- […]
Jul 19, 2020:
- 8:37 PM Ticket #3532 (Registration error: month must be in 1..12) created by
- […]
- 6:05 PM Ticket #3531 (ChimeraX startup: unsupported locale setting) created by
- […]
- 8:48 AM Ticket #3530 (setattr type conflict) created by
- […]
Jul 18, 2020:
- 5:41 AM Ticket #3529 (Pseudobond redraw problem: cannot resize an array that references or ...) created by
- […]
- 5:05 AM Ticket #3528 (Obsolete Blast hits) created by
- […]
- 3:26 AM Ticket #3527 (pseudobond manager group_map property error when resetting session) created by
- […]
Jul 17, 2020:
- 2:29 PM Ticket #3526 (Smorgasbord of GL errors) closed by
- can't reproduce: Same as #3521 and #3506, three different reporters. Out of memory in …
- 1:07 PM Ticket #3525 (Crash updating QQuickWindow) closed by
- can't reproduce: I suspect this is related to ISOLDE's interface, since QQuickWindow is …
- 12:06 PM Ticket #3524 (Crash performing some kind of operation on a window) closed by
- can't reproduce
- 12:02 PM Ticket #3523 (open .pdbqt: list index out of range) closed by
- duplicate: Hi Santiago, Thanks for reporting this problem. It was fixed a few …
- 6:12 AM Ticket #3526 (Smorgasbord of GL errors) created by
- […]
- 2:52 AM Ticket #3525 (Crash updating QQuickWindow) created by
- […]
- 2:25 AM Ticket #3524 (Crash performing some kind of operation on a window) created by
- […]
Jul 16, 2020:
- 2:50 PM Ticket #3523 (open .pdbqt: list index out of range) created by
- […]
- 1:00 PM Ticket #3522 (prevent installing incompatible bundles) created by
- This will be eventually be handled by pip. But for now, we will need …
- 8:37 AM Ticket #3521 (Many graphics errors) created by
- […]
- 1:29 AM Ticket #3306 (ChimeraX startup: unsupported locale setting) closed by
- fixed: Changed code to use hardcoded strftime and strptime for our time …
Jul 15, 2020:
- 11:30 PM Ticket #3520 (Some kind of graphics crash running ISOLDE) created by
- […]
- 5:46 PM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) closed by
- fixed: Fixed. I made the webcam handle the case when the camera changes the …
- 3:56 PM Ticket #3519 (vseries arg not working) closed by
- fixed: Indeed, just adding "batch='true'" to all formats fixed it. Fix …
- 2:18 PM Ticket #3516 (self._positions is None while dragging arrow) closed by
- fixed: Catch non-2dlabels-command closure of arrows and remove those from …
- 11:38 AM Ticket #3477 (file names with spaces) closed by
- not a bug: File names with spaces require quotes around them in an "open" …
- 10:35 AM Ticket #3173 (BLAST PDB web services being removed November 2020) reopened by
- Updated Blast considerably slower because the new REST services don't …
- 9:26 AM Ticket #3518 (3D label: name 'session' is not defined) closed by
- fixed: This was fixed the day after you downloaded ChimeraX. Please download …
- 9:21 AM Ticket #3519 (vseries arg not working) created by
- […]
- 5:12 AM Ticket #3518 (3D label: name 'session' is not defined) created by
- […]
- 4:55 AM Ticket #3517 (webcam: QVideoFrame size (640,480) does not match expected image size) created by
- […]
- 12:38 AM Ticket #3516 (self._positions is None while dragging arrow) created by
- […]
Jul 14, 2020:
- 6:33 PM Ticket #3465 (tape measure to surface crashes) closed by
- can't reproduce: No reply from reporter.
- 6:29 PM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) closed by
- duplicate: Yeah, the clip cap error was also fixed the day after it was …
- 5:30 PM Ticket #3515 (Fetch biological assemblies from PDB for NIH 3D) created by
- Phil Cruz and Darrell Hurt say the NIH 3D pipeline needs ChimeraX to …
- 5:26 PM Ticket #3510 (Problem drawing Pseudobond and/or saving session) closed by
- can't reproduce: It appears that you showed some distances, deleted some distances, …
- 4:59 PM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) closed by
- nonchimerax: For the spin movie problem it is good to inspect the error message …
- 3:40 PM Ticket #3514 (Type registration conflict) closed by
- not a bug: Hi Jared, Thanks for reporting this problem. When setattr with …
- 1:30 PM Ticket #3514 (Type registration conflict) created by
- […] eIF3a.cxc
- 10:47 AM Ticket #3173 (BLAST PDB web services being removed November 2020) closed by
- fixed
- 10:09 AM Ticket #3513 (show_surface_clip_caps: Array argument has non-numeric values) created by
- […]
- 9:28 AM Ticket #3512 (conference command: TimeoutError: [Errno 60] Operation timed out) created by
- […]
- 8:40 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) closed by
- duplicate: Duplicate of #3457
- 7:22 AM Ticket #3511 (tape-measure mouse mode using dead MarkerSet) created by
- […]
- 12:32 AM Ticket #3510 (Problem drawing Pseudobond and/or saving session) created by
- […]
Jul 13, 2020:
- 5:33 PM Ticket #3353 (Flatten bundle hierarchy) closed by
- fixed: I flattened map.data, map.fit, map.filter, map.series to map_data, …
- 4:13 PM Ticket #3506 (GL error extravaganza) closed by
- nonchimerax: All "out of memory" errors in OpenGL calls including Qt gui drawing …
- 3:38 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) closed by
- fixed: Hi Henry, I believe this problem is fixed in the daily build (your …
- 2:58 PM Ticket #3509 (Chain KeyError opening Phenix CIF file) created by
- […] full_mNb6_rsr24-coot-5.deposit_000.cif
- 2:28 PM Ticket #3507 (3D labels: name 'session' is not defined) closed by
- fixed: Fixed.
- 2:06 PM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) closed by
- fixed: Switched ViewdockX code from using open() directly to …
- 12:25 PM Ticket #3508 (ISOLDE's self.selected_model is dead) created by
- […]
- 12:00 PM Ticket #3507 (3D labels: name 'session' is not defined) created by
- […]
- 10:38 AM Ticket #3506 (GL error extravaganza) created by
- […]
- 10:20 AM Ticket #3505 (UnicodeDecodeError reading ZINC .pdbqt file) created by
- […]
- 8:54 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by
- duplicate: Hi Eva, Thanks for reporting this problem. It was fixed a couple of …
- 8:45 AM Ticket #3504 (Stereo camera: glDrawBuffer invalid operation) created by
- […]
- 7:37 AM Ticket #3503 (Main graphics not shown when window maximized) created by
- […]
- 2:18 AM Ticket #3502 ("realistic" lipid bilayer depiction) created by
- […] complex_i_images.tar.gz
Jul 12, 2020:
- 3:31 PM Ticket #3501 (Problem saving map: No such file or directory) created by
- […]
- 8:30 AM Ticket #3500 (Problem simulating glycans) created by
- […]
- 4:45 AM Ticket #3499 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by
- […]
Jul 10, 2020:
- 8:41 AM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by
- duplicate: Hi, Thanks for reporting this problem. It was fixed around the …
- 6:31 AM Ticket #3498 ("conference start": Connection reset by peer) created by
- […]
- 5:41 AM Ticket #3497 (Bundle builder failing on Mac) created by
- […]
Jul 9, 2020:
- 11:57 PM Ticket #3496 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') created by
- […]
- 5:16 PM ChangeLog edited by
- (diff)
- 5:15 PM ChangeLog edited by
- (diff)
- 4:30 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) closed by
- fixed: Hi Caitlyn, Thanks for reporting this problem. I have just fixed it, …
- 3:55 PM Ticket #3494 (Graphics driver / shader crash(?)) closed by
- nonchimerax: Typical Apple Intel graphics driver crash: "Graphics hardware …
- 3:48 PM Ticket #3493 (Strudel Score: self.map_chim is None) closed by
- nonchimerax
- 3:06 PM Ticket #3495 (ViewDockX no longer handling .pdbqt file) created by
- […] 4hydroxytamoxifen_outF1.pdbqt
- 12:06 PM Ticket #3210 (develop stragegy for updating JavaScript toolkits embedded in ui module) closed by
- wontfix
- 12:05 PM Ticket #3158 (Bogus Linux test failures) closed by
- fixed: Redid linux build script to avoid this.
- 11:53 AM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) closed by
- fixed: Fixed. Serialization code understood tinyarrays, but the layer above …
- 11:29 AM Ticket #3494 (Graphics driver / shader crash(?)) created by
- […]
- 10:01 AM Ticket #3493 (Strudel Score: self.map_chim is None) created by
- […]
- 1:30 AM Ticket #3492 (Try to continue on past session-restore error) created by
- […]
Jul 8, 2020:
- 7:45 PM ChangeLog edited by
- (diff)
- 7:44 PM ChangeLog edited by
- (diff)
- 5:46 PM Ticket #2111 (SetupTools version number "normalisation" breaks bundle_builder) closed by
- fixed: Bundle builder now canonicalizes the version number to match setuptools.
- 5:44 PM Ticket #3084 (Inserted fragments should update missing-structure pseudobonds) reopened by
- 3:30 PM Ticket #3488 (Need Info.plist description of camera usage) closed by
- fixed: Fixed. Current Mac ChimeraX daily build on download page now has …
- 2:37 PM Ticket #3491 (Cannot save session containing tinyarray.ndarray_float) created by
- […] chimerax_error.md
- 10:41 AM Ticket #3471 (Probable memory corruption) closed by
- fixed: Fix available in next daily build.
- 9:27 AM Ticket #3489 (Probable memory corruption) closed by
- duplicate: This is duplicate to both #3484 and #3471
Jul 7, 2020:
- 6:12 PM Ticket #3487 (Need Info.plist description of camera usage) closed by
- duplicate: I believe the crash is because the notarized ChimeraX uses Apple's …
- 5:07 PM Ticket #3490 (add restart button to dialog that says updated bundle is in use) created by
- See ticket #3485 for the confusion. There should be two buttons …
- 4:16 PM Ticket #3486 ("webcam on" command does not work on Windows) closed by
- not a bug: The webcam command is not in ChimeraX 1.0. It was added 2 days ago …
- 2:15 PM Ticket #3489 (Probable memory corruption) created by
- […]
- 11:20 AM Ticket #3488 (Need Info.plist description of camera usage) created by
- […]
- 10:33 AM Ticket #3487 (Need Info.plist description of camera usage) created by
- […]
- 9:49 AM Ticket #3486 ("webcam on" command does not work on Windows) created by
- […]
- 9:01 AM Ticket #3485 (Problem with installation) closed by
- not a bug: Hi Sepideh, That message simply means that the updated ISOLDE bundle …
- 8:58 AM Ticket #3484 (Probable memory corruption) closed by
- duplicate: Added information to ticket #3471
Note:
See TracTimeline
for information about the timeline view.
