Opened 5 years ago
Closed 5 years ago
#3565 closed defect (duplicate)
Nucleotides: asking for distance from None
Reported by: | Owned by: | Greg Couch | |
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Priority: | normal | Milestone: | |
Component: | Depiction | Version: | |
Keywords: | Cc: | Tristan Croll | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 0.93 (2020-04-03) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.93 (2020-04-03) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open2 C:/Users/Manoj/Documents/phenix_lin28/DNA_alone_Lin28bsharp.mrc Opened DNA_alone_Lin28bsharp.mrc, grid size 376,376,376, pixel 0.649, shown at level 1.71, step 2, values float32 > volume #1 level 3.934 > open2 C:/Users/Manoj/Documents/phenix_lin28/lin28b_DNA.pdb Chain information for lin28b_DNA.pdb #2 --- Chain | Description I | No description available J | No description available Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\nucleotides\\_data.py", line 525, in rebuild _rebuild_molecule('internal', mol) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\nucleotides\\_data.py", line 652, in _rebuild_molecule hide_residues = make_ladder(nd, residues, mol._ladder_params) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\nucleotides\\_data.py", line 1237, in make_ladder va, na, ta = get_cylinder(params.rung_radius, ep0, ep1) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\atomic\nucleotides\\_data.py", line 733, in get_cylinder h = distance(p0, p1) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\geometry\vector.py", line 71, in distance return sqrt(distance_squared(p, q)) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\geometry\vector.py", line 63, in distance_squared if len(p) == 3: TypeError: object of type 'NoneType' has no len() Error processing trigger "new frame": TypeError: object of type 'NoneType' has no len() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\geometry\vector.py", line 63, in distance_squared if len(p) == 3: See log for complete Python traceback. OpenGL version: 3.3.0 - Build 20.19.15.4531 OpenGL renderer: Intel(R) HD Graphics 5500 OpenGL vendor: Intel Manufacturer: Dell Inc. Model: Inspiron 7348 OS: Microsoft Windows 10 Home (Build 18362) Memory: 8,501,149,696 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i7-5500U CPU @ 2.40GHz"
Change History (2)
comment:1 by , 5 years ago
Cc: | added |
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Component: | Unassigned → Depiction |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Nucleotides: asking for distance from None |
comment:2 by , 5 years ago
Resolution: | → duplicate |
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Status: | assigned → closed |
Same solution as before. Update to ChimeraX 1.0 and this bug will go away.
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(dup of #3535)