Opened 5 years ago

Closed 5 years ago

#3608 closed defect (duplicate)

wrapped C/C++ object of type SaveOptionsWidget has been deleted

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.0 (2020-05-08)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.0rc202005080235 (2020-05-08)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/Uma/Downloads/cryosparc_P4_J507_class_00_00142_volume.mrc

Opened cryosparc_P4_J507_class_00_00142_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.554, step 1, values float32  

> vop zflip #1

> volume zflip #1

Expected a density maps specifier or a keyword  

> volume #1 level 0.4978

> zflip #1

Unknown command: zflip #1  

> vop z flip #1

> volume zone flip #1

Missing or invalid "volumes" argument: invalid density maps specifier  

> select #1

2 models selected  

> hide #!1 models

> open C:/Users/Uma/Downloads/cs_P507_class00_00142_volume_zflipped.mrc

Opened cs_P507_class00_00142_volume_zflipped.mrc, grid size 128,128,128, pixel
2.13, shown at level 0.6, step 1, values float32  

> hide #!2 models

> open C:/Users/Uma/Downloads/J507_class0_zflipped_corr.mrc

Opened J507_class0_zflipped_corr.mrc, grid size 128,128,128, pixel 2.13, shown
at level 0.554, step 1, values float32  

> volume #3 level 0.481

> toolshed show "Color Actions"

> set bgColor white

> lighting soft

> lighting simple

> vop gaussian #3 sdev 6.39

> undo

> hide #!4 models

> hide #!2 models

> show #!4 models

> hide #!4 models

> show #!3 models

> volume #3 level 0.4517

> save C:\Users\Uma\Desktop\image1.png supersample 3

> save C:\Users\Uma\Desktop\image2.png supersample 3

> hide #!3 models

> open C:/Users/Uma/Downloads/J507_class01_00142_zflippedcorr.mrc

Opened J507_class01_00142_zflippedcorr.mrc, grid size 128,128,128, pixel 2.13,
shown at level 0.6, step 1, values float32  

> save C:\Users\Uma\Desktop\image3.png supersample 3

> save C:\Users\Uma\Desktop\image4.png supersample 3

> hide #!5 models

> open C:/Users/Uma/Downloads/cryosparc_P4_J507_class_02_00142_volume.mrc

Opened cryosparc_P4_J507_class_02_00142_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.559, step 1, values float32  

> volume #6 level 0.582

> save C:\Users\Uma\Desktop\image5.png supersample 3

> save C:\Users\Uma\Desktop\image6.png supersample 3

> hide #!6 models

> open C:/Users/Uma/Downloads/cryosparc_P4_J507_class_03_00142_volume.mrc

Opened cryosparc_P4_J507_class_03_00142_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.623, step 1, values float32  

> save C:\Users\Uma\Desktop\image7.png supersample 3

> hide #!7 models

> open C:/Users/Uma/Downloads/cryosparc_P4_J516_007_volume_map.mrc

Opened cryosparc_P4_J516_007_volume_map.mrc, grid size 256,256,256, pixel
1.07, shown at level 0.189, step 1, values float32  

> volume #8 level 0.1573

> save C:\Users\Uma\Desktop\image8.png supersample 3

> save C:\Users\Uma\Desktop\image9.png supersample 3

> hide #!8 models

> open C:/Users/Uma/Downloads/J521_3dabinit_class00_final_zflipped.mrc

Opened J521_3dabinit_class00_final_zflipped.mrc, grid size 128,128,128, pixel
2.13, shown at level 0.593, step 1, values float32  

> save C:\Users\Uma\Desktop\image10.png supersample 3

> save C:\Users\Uma\Desktop\image11.png supersample 3

> hide #!9 models

> open C:/Users/Uma/Downloads/cryosparc_P4_J521_class_01_final_volume.mrc
> C:/Users/Uma/Downloads/J521_class_02_final_zflipped.mrc

Opened cryosparc_P4_J521_class_01_final_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.48, step 1, values float32  
Opened J521_class_02_final_zflipped.mrc, grid size 128,128,128, pixel 2.13,
shown at level 0.576, step 1, values float32  

> hide #!10 models

> hide #!11 models

> show #!10 models

> save C:\Users\Uma\Desktop\image12.png supersample 3

> hide #!10 models

> show #!11 models

> volume #11 level 0.4187

> save C:\Users\Uma\Desktop\image13.png supersample 3

> save C:\Users\Uma\Desktop\image14.png supersample 3

> hide #!11 models

> open C:/Users/Uma/Downloads/cryosparc_P1_J628_class_04_00082_volume.mrc
> C:/Users/Uma/Downloads/cryosparc_P1_J628_class_03_00082_volume.mrc
> C:/Users/Uma/Downloads/cryosparc_P1_J628_class_01_00082_volume.mrc
> C:/Users/Uma/Downloads/cryosparc_P1_J628_class_00_00082_volume.mrc
> C:/Users/Uma/Downloads/J628_hetref_class02_0082_zflip.mrc

Opened cryosparc_P1_J628_class_04_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.617, step 1, values float32  
Opened cryosparc_P1_J628_class_03_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.685, step 1, values float32  
Opened cryosparc_P1_J628_class_01_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.577, step 1, values float32  
Opened cryosparc_P1_J628_class_00_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.613, step 1, values float32  
Opened J628_hetref_class02_0082_zflip.mrc, grid size 128,128,128, pixel 2.13,
shown at level 0.612, step 1, values float32  

> hide #!16 models

> hide #!15 models

> hide #!14 models

> hide #!13 models

> hide #!12 models

> show #!15 models

> save C:\Users\Uma\Desktop\image15.png supersample 3

> hide #!15 models

> show #!14 models

> volume #14 level 0.499

> save C:\Users\Uma\Desktop\image16.png supersample 3

> save C:\Users\Uma\Desktop\image17.png supersample 3

> hide #!14 models

> show #!16 models

> volume #16 level 0.4996

> save C:\Users\Uma\Desktop\image18.png supersample 3

> save C:\Users\Uma\Desktop\image19.png supersample 3

> hide #!16 models

> show #!13 models

> save C:\Users\Uma\Desktop\image20.png supersample 3

> hide #!13 models

> show #!12 models

> volume #12 level 0.521

> save C:\Users\Uma\Desktop\image21.png supersample 3

> save C:\Users\Uma\Desktop\image22.png supersample 3

> hide #!12 models

> open C:/Users/Uma/Downloads/J630_hetref_class_00_zflipped.mrc

Opened J630_hetref_class_00_zflipped.mrc, grid size 128,128,128, pixel 2.13,
shown at level 0.607, step 1, values float32  

> volume #17 level 0.507

> save C:\Users\Uma\Desktop\image23.png supersample 3

> save C:\Users\Uma\Desktop\image24.png supersample 3

> save C:\Users\Uma\Desktop\image25.png supersample 3

> hide #!17 models

> open C:/Users/Uma/Downloads/cryosparc_P1_J630_class_01_00082_volume.mrc

Opened cryosparc_P1_J630_class_01_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.593, step 1, values float32  

> volume #18 level 0.425

> volume #18 level 0.5493

> save C:\Users\Uma\Desktop\image26.png supersample 3

> save C:\Users\Uma\Desktop\image27.png supersample 3

> save C:\Users\Uma\Desktop\image28.png supersample 3

> hide #!18 models

> open C:/Users/Uma/Downloads/cryosparc_P1_J630_class_02_00082_volume.mrc

Opened cryosparc_P1_J630_class_02_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.565, step 1, values float32  

> save C:\Users\Uma\Desktop\image29.png supersample 3

> hide #!19 models

> open C:/Users/Uma/Downloads/J630_hetref_class_03_0082_zflip.mrc

Opened J630_hetref_class_03_0082_zflip.mrc, grid size 128,128,128, pixel 2.13,
shown at level 0.646, step 1, values float32  

> volume #20 level 0.6153

> save C:\Users\Uma\Desktop\image30.png supersample 3

> save C:\Users\Uma\Desktop\image31.png supersample 3

> save C:\Users\Uma\Desktop\image32.png supersample 3

> hide #!20 models

> open C:/Users/Uma/Downloads/cryosparc_P1_J630_class_04_00082_volume.mrc

Opened cryosparc_P1_J630_class_04_00082_volume.mrc, grid size 128,128,128,
pixel 2.13, shown at level 0.679, step 1, values float32  

> save C:\Users\Uma\Desktop\image33.png supersample 3

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\ui\gui.py", line 1543, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 111, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 122, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 24, in display  
self._customize_dialog(session, dialog)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 86, in _customize_dialog  
self._format_selected(session, dialog)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\ui\gui.py", line 1543, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 111, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 122, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 24, in display  
self._customize_dialog(session, dialog)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 86, in _customize_dialog  
self._format_selected(session, dialog)  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted  
  
File "C:\Program Files\ChimeraX 1.0rc202005080235\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 98, in _format_selected  
self._options_layout.addWidget(self._current_option)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 445.87
OpenGL renderer: GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: XPS 15 7590
OS: Microsoft Windows 10 Pro (Build 18363)
Memory: 8,304,005,120
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz"

Change History (2)

comment:1 by Eric Pettersen, 5 years ago

Component: UnassignedInput/Output
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionwrapped C/C++ object of type SaveOptionsWidget has been deleted

comment:2 by Eric Pettersen, 5 years ago

Resolution: duplicate
Status: acceptedclosed

Fixed awhile ago.

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