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#3545 closed defect (not a bug)
Problem setting autochain attribute
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description I am trying to hide the chain traces (pseudobonds) using setattr #1 model autochain false for each model and it's not working. I get Assigning autochain attribute to 4 items Not creating attribute 'autochain'; use 'create true' to override Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. > open "C:\Users\dharr\Box\Nitrogenase CO > reduction\Chimera\FinalAlignNearco.cxs" format session registering illegal selector name "5A" Log from Thu Jul 23 14:57:09 2020UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. > open "C:\Users\dharr\Box\Nitrogenase CO > reduction\Chimera\FinalAlignNearco.cxs" format session registering illegal selector name "5A" Log from Thu Jul 23 14:54:36 2020UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. > open "C:/Users/dharr/Box/ChimeraX Movie/Final_with_figure.cxs" registering illegal selector name "5A" [had to truncate the log to fit into the ticket] > hide Vcos > hide #4.3 > hide #4.4 > hide #3 cartoons > hide #4.5 > hide #4.6 > wait 50 > view center > crossfade > show #1 cartoons > show Mocos > show #4.7 > wait 50 > crossfade > show #2 cartoons > show Vcos > show # 4.8 > show #4.10 > wait 50 > crossfade > show #3 cartoons > show #4.9 > wait 50 > roll y 1 360 > wait > roll x 1 360 > wait > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > view #1/A > wait 50 > roll -x 1 130 > wait > roll -z 1 130 > wait > crossfade > show #4.11 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/D to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain D (#3), sequence alignment score = 987.1 RMSD between 373 pruned atom pairs is 0.975 angstroms; (across all 451 pairs: 3.034) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > crossfade > view #1/A :ics > view Cofinal > wait 50 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade 50 > show Nearco > show NearcocolorG > show NearcocolorR > wait 1 > hide @CA pseudobonds > wait 100 > crossfade 50 > color NearcocolorG green > color NearcocolorR red > wait 100 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade > show #1.3 > movie encode output "C:/Users/dharr/Box/ChimeraX > Movie/Alignment/Video_final3.mp4" Movie saved to C:/Users/dharr/Box/ChimeraX Movie/Alignment/Video_final3.mp4 executed Script.cxc > show NearcocolorG > show NearcocolorR > mmaker #3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain D (#3), sequence alignment score = 987.1 RMSD between 373 pruned atom pairs is 0.975 angstroms; (across all 451 pairs: 3.034) > mmaker #3/D to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain D (#3), sequence alignment score = 987.1 RMSD between 373 pruned atom pairs is 0.975 angstroms; (across all 451 pairs: 3.034) > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > open Script.cxc > view master > hide #1 cartoons > hide Mocos > hide #2 cartoons > hide Vcos > hide #3 cartoons > hide #4 > hide #1 atoms > hide #2 atoms > hide #3 atoms > color #1 sky blue > color Mocos byelement > color #2 light green > color Vcos byelement > color Mo magenta > color V pink > color #3 plum > hide #1.3 > select clear > movie record > wait 50 > crossfade > show #1 cartoons > show Mocos > show #4.1 > show #4.2 > wait 50 > crossfade > show #2 cartoons > show Vcos > show #4.3 > show #4.4 > wait 50 > crossfade > show #3 cartoons > show #4.5 > show #4.6 > wait 50 > crossfade > hide #1 cartoons > hide Mocos > hide #4.1 > hide #4.2 > hide #2 cartoons > hide Vcos > hide #4.3 > hide #4.4 > hide #3 cartoons > hide #4.5 > hide #4.6 > wait 50 > view center > crossfade > show #1 cartoons > show Mocos > show #4.7 > wait 50 > crossfade > show #2 cartoons > show Vcos > show # 4.8 > show #4.10 > wait 50 > crossfade > show #3 cartoons > show #4.9 > wait 50 > roll y 1 360 > wait > roll x 1 360 > wait > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > view #1/A > wait 50 > roll -x 1 130 > wait > roll -z 1 130 > wait > crossfade > show #4.11 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > crossfade > view #1/A :ics > view Cofinal > wait 50 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade 50 > show Nearco > show NearcocolorG > show NearcocolorR > wait 1 > hide @CA pseudobonds > wait 100 > crossfade 50 > color NearcocolorG green > color NearcocolorR red > wait 100 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade > show #1.3 > movie encode output "C:/Users/dharr/Box/ChimeraX > Movie/Alignment/Video_final4mp4" Unrecognized movie file suffix Video_final4mp4, use *.ogv, *.avi, *.mp4, *.wmv, *.webm, *.mov > show NearcocolorR > show NearcocolorG > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > view center > show #1 cartoons > show #2 cartoons > show #3 cartoons > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > view #1/A > wait 50 > roll -x 1 130 > wait > hide #1.3 > movie stop > roll -z 1 130 > wait > crossfade > show #4.11 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > hide Yesco > hide #1.2 models > hide #2.2 models > hide #3.1 models Drag select of 13 atoms, 11 bonds Drag select of 8 atoms, 5 bonds Drag select of 13 atoms, 10 bonds Drag select of 26 atoms, 26 bonds Drag select of 21 atoms, 15 bonds Drag select of 26 atoms, 26 bonds Drag select of 21 atoms, 16 bonds Drag select of 20 atoms, 17 bonds Drag select of 12 atoms, 9 bonds Drag select of 18 atoms, 15 bonds Drag select of 21 atoms, 19 bonds > name frozen NearcocolorR sel > name frozen NearcocolorR sel > name frozen NearcocolorR sel > name frozen NearcocolorR sel > color NearcocolorR red > hide NearcocolorR Drag select of 156 atoms, 135 bonds > name frozen NearcocolorG sel > name frozen NearcocolorG sel > name frozen NearcocolorG sel > name frozen NearcocolorG sel > select clear > movie encode output "C:/Users/dharr/Box/ChimeraX > Movie/Alignment/throwaway3.mp4" Movie saved to C:/Users/dharr/Box/ChimeraX Movie/Alignment/throwaway3.mp4 > open Script.cxc > view master > hide #1 cartoons > hide Mocos > hide #2 cartoons > hide Vcos > hide #3 cartoons > hide #4 > hide #1 atoms > hide #2 atoms > hide #3 atoms > color #1 sky blue > color Mocos byelement > color #2 light green > color Vcos byelement > color Mo magenta > color V pink > color #3 plum > hide #1.3 > select clear > movie record > wait 50 > crossfade > show #1 cartoons > show Mocos > show #4.1 > show #4.2 > wait 50 > crossfade > show #2 cartoons > show Vcos > show #4.3 > show #4.4 > wait 50 > crossfade > show #3 cartoons > show #4.5 > show #4.6 > wait 50 > crossfade > hide #1 cartoons > hide Mocos > hide #4.1 > hide #4.2 > hide #2 cartoons > hide Vcos > hide #4.3 > hide #4.4 > hide #3 cartoons > hide #4.5 > hide #4.6 > wait 50 > view center > crossfade > show #1 cartoons > show Mocos > show #4.7 > wait 50 > crossfade > show #2 cartoons > show Vcos > show # 4.8 > show #4.10 > wait 50 > crossfade > show #3 cartoons > show #4.9 > wait 50 > roll y 1 360 > wait > roll x 1 360 > wait > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > view #1/A > wait 50 > roll -x 1 130 > wait > roll -z 1 130 > wait > crossfade > show #4.11 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > crossfade > view #1/A :ics > view Cofinal > wait 50 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade 50 > show Nearco > show NearcocolorG > show NearcocolorR > wait 1 > hide @CA pseudobonds > wait 100 > crossfade 50 > color NearcocolorG green > color NearcocolorR red > wait 100 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade > show #1.3 > movie stop > show NearcolorR Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > show NearcocolorR > hide NearcocolorR > mmaker #3/a to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > undo > undo > view centetr Expected an objects specifier or a view name or a keyword > view center > show #1 cartoons > show #2 cartoons > show #3 cartoons > hide #1.3 > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > crossfade > view #1/A :ics > view Cofinal > wait 50 > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > view Cofinal > view Cofinal > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > show #1.3 > hide #1.3 models > show #1.3 models > movie stop Not currently recording > show #1.3 > hide #1.3 models > show #1.3 models > hide #1.3 models > show #1.3 models > hide #1.3 models > show #1.3 models > show #1.3 lables Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > show #1.3 labels Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > hide #1.3 > show #1.3 > view Cofinal > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > view name Cofinal > movie encode output "C:/Users/dharr/Box/ChimeraX > Movie/Alignment/throwaway4.mp4" Movie saved to C:/Users/dharr/Box/ChimeraX Movie/Alignment/throwaway4.mp4 > open Script.cxc > view master > hide #1 cartoons > hide Mocos > hide #2 cartoons > hide Vcos > hide #3 cartoons > hide #4 > hide #1 atoms > hide #2 atoms > hide #3 atoms > color #1 sky blue > color Mocos byelement > color #2 light green > color Vcos byelement > color Mo magenta > color V pink > color #3 plum > hide #1.3 > select clear > movie record > wait 50 > crossfade > show #1 cartoons > show Mocos > show #4.1 > show #4.2 > wait 50 > crossfade > show #2 cartoons > show Vcos > show #4.3 > show #4.4 > wait 50 > crossfade > show #3 cartoons > show #4.5 > show #4.6 > wait 50 > crossfade > hide #1 cartoons > hide Mocos > hide #4.1 > hide #4.2 > hide #2 cartoons > hide Vcos > hide #4.3 > hide #4.4 > hide #3 cartoons > hide #4.5 > hide #4.6 > wait 50 > view center > crossfade > show #1 cartoons > show Mocos > show #4.7 > wait 50 > crossfade > show #2 cartoons > show Vcos > show # 4.8 > show #4.10 > wait 50 > crossfade > show #3 cartoons > show #4.9 > wait 50 > roll y 1 360 > wait > roll x 1 360 > wait > crossfade > hide #1/B,C,D cartoons > hide #2/B,C,D,E,F cartoons > hide #3/B,C,D,E,F cartoons > hide #4.10 > hide Pclust > hide Noco > wait 50 > crossfade > view #1/A > wait 50 > roll -x 1 130 > wait > roll -z 1 130 > wait > crossfade > show #4.11 > crossfade > mmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with 5n6y, chain A (#2), sequence alignment score = 1047.6 RMSD between 375 pruned atom pairs is 0.968 angstroms; (across all 450 pairs: 2.998) > wait 50 > crossfade > mmaker #3/A to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 3u7q, chain A (#1) with FeN2ase Model Swiss Model VN2ase.pdb, chain A (#3), sequence alignment score = 984.1 RMSD between 378 pruned atom pairs is 0.973 angstroms; (across all 451 pairs: 3.031) > wait 50 > crossfade 100 > hide #1 cartoons > hide #2 cartoons > hide #3 cartoons > hide Pclust > hide Noco > hide #4.7 > hide #4.8 > hide #4.9 > hide #4.10 > hide #4.11 > wait 100 > crossfade > view #1/A :ics > view Cofinal > wait 50 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade 50 > show Nearco > show NearcocolorG > show NearcocolorR > wait 1 > hide @CA pseudobonds > wait 100 > crossfade 50 > color NearcocolorG green > color NearcocolorR red > wait 100 > roll x 1 360 > wait > roll y 1 360 > wait 410 > crossfade > show #1.3 > movie encode output "C:/Users/dharr/Box/Nitrogenase CO > reduction/Chimera/Video_final_draft.mp4" Movie saved to C:/Users/dharr/Box/Nitrogenase CO reduction/Chimera/Video_final_draft.mp4 executed Script.cxc > save "C:/Users/dharr/Box/ChimeraX Movie/FinalVideo.cxs" > close #4 > set bgColor white > color #1.3 black > label color black > save "C:/Users/dharr/Box/Nitrogenase CO > reduction/Chimera/FinalAlignNearco.cxs" opened ChimeraX session > close #1.2 > close #2.2 > close #3.1 > save "C:/Users/dharr/Box/Nitrogenase CO > reduction/Chimera/FinalAlignNearco.cxs" opened ChimeraX session > setattr #1 model autochain false Assigning autochain attribute to 4 items Not creating attribute 'autochain'; use 'create true' to override OpenGL version: 3.3.0 NVIDIA 451.67 OpenGL renderer: GeForce GTX 1050 Ti/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: XPS 8930 OS: Microsoft Windows 10 Home (Build 18362) Memory: 16,977,567,744 MaxProcessMemory: 137,438,953,344 CPU: 6 Intel(R) Core(TM) i5-8400 CPU @ 2.80GHz" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 File attachment: FinalAlignNearco.cxs
Attachments (1)
Change History (4)
by , 5 years ago
| Attachment: | FinalAlignNearco.cxs added |
|---|
comment:1 by , 5 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Problem setting autochain attribute |
comment:2 by , 5 years ago
| Resolution: | → not a bug |
|---|---|
| Status: | accepted → closed |
Hi Derek,
Sorry, but the command even slightly more arcane that what Tom Goddard provided. To set the 'autochain' attribute on structure model #1 and _not_ any of its submodels the syntax is:
setattr #!1 model autochain false
Otherwise the command also would try to set the attribute on the submodels, which would create such attributes since those models don't have that attribute, which is what your previous attempts were complaining about. Sorry for all this hassle.
--Eric
Eric Pettersen
UCSF Computer Graphics Lab
comment:3 by , 5 years ago
Thanks Eric, no hassle at all. That you all are available and willing to help the end user is very much appreciated. Derek Harris Postdoctoral Fellow Seefeldt Lab Department of Chemistry and Biochemistry Utah State University On Thu, Jul 23, 2020 at 3:21 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
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