Opened 5 years ago

Closed 5 years ago

#3558 closed defect (can't reproduce)

Session restore: Tried to add model with the same id as another model

Reported by: jaremko@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Sessions Version:
Keywords: Cc: Greg Couch
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.1.dev202007180211 (2020-07-18 02:11:31 UTC)
Description
Can't open a previous session that contains a .seg file as model

Log:
UCSF ChimeraX version: 1.1.dev202007180211 (2020-07-18)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

Log from Mon Jul 20 09:05:42 2020UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

Showing run_class001.seg - 8 regions, 8 surfaces  
Log from Sun Jul 19 11:50:53 2020UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

Showing run_class001.seg - 8 regions, 8 surfaces  
Log from Fri Jul 17 21:57:03 2020

> ui mousemode rightMode zoom

> set bgColor white

> hide all atoms

> show all cartoons

> color /a #55c087

> color /b #ffe255

> color /c #f6986c

> color /d #6b80bc

> color /e #aa7fba

> lighting soft

> lighting depthCue false

> cartoon suppressBackboneDisplay false

> graphics silhouettes true

UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

Showing run_class001.seg - 8 regions, 8 surfaces  
opened ChimeraX session  

> view list

Named views: O1-DNA, O4-5-DNA, O4-5-DNA_2, ScORC_O4_loop, back-side  

> close #3

> open
> C:\Users\mattj\Documents\cryoem_chimera\2018-12-27_x108\relionnew\Refine3D\job141\ORC-
> DNA_Refine_5-coot-15.pdb name ORC-DNA_pdb

Summary of feedback from opening
C:\Users\mattj\Documents\cryoem_chimera\2018-12-27_x108\relionnew\Refine3D\job141\ORC-
DNA_Refine_5-coot-15.pdb  
---  
warning | Ignored bad PDB record found on line 16538  
END  
  
Chain information for ORC-DNA_pdb #3  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
  

> hide all atoms

> hide all cartoons

> cartoon style nucleic xsection oval thickness 1 width 2.5

> cartoon suppressBackboneDisplay false

> color ligand black

> color ligand byhetero

> color /g red

> hide /f-g atoms

> show nucleic & sidechain

> nucleotides ladder

> color /a #55c087

> color /b #ffe255

> color /c #f6986c

> color /d #6b80bc

> color /e #aa7fba

> show #3 cartoons

> show (#3/a:591,595,596,626,628,629 & sidechain) target ab

> show (sel-residues & sidechain) target ab

> style all stick

Changed 92459 atom styles  

> color byhetero

> view O1-DNA

> lighting soft

> hide #!2 models

> hide #!7 models

> clip off

> show #1 models

> clip far -1

> clip far -1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> graphics silhouettes

Current silhouette settings:  
enabled: True  
width: 3  
color: 0,0,0  
depth jump: 0.03  

> graphics silhouettes depthJump .05

> graphics silhouettes depthJump .06

> graphics silhouettes depthJump .07

> graphics silhouettes depthJump .01

> graphics silhouettes

Current silhouette settings:  
enabled: True  
width: 3  
color: 0,0,0  
depth jump: 0.01  

> graphics silhouettes width 4 depthJump .01

> view list

Named views: O1-DNA, O4-5-DNA, O4-5-DNA_2, ScORC_O4_loop, back-side  

> view name DNA-map

> view DNA-ma

Expected an objects specifier or a view name or a keyword  

> view DNA-map

> surface dust all

> surface dust all

Cannot determine format for 'image'  

> save "C:\Users\mattj\Google Drive\CSHL\papers\x108\figures\fig4\DNA-map.png"
> width 2000 transparentBackground true

> hide all models

> show #2 models

> view O2WH

Expected an objects specifier or a view name or a keyword  

> view list

Named views: DNA-map, O1-DNA, O4-5-DNA, O4-5-DNA_2, ScORC_O4_loop, back-side  

> hide all models

> show #1 models

> lighting soft

> lighting gentle

> view name O2WH

Cannot determine format for 'session'  

> save "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

> hide all models

> show #1 models

> view O2WH

> lighting gentle

> save "C:\Users\mattj\Google
> Drive\CSHL\papers\x108\figures\fig4\O2WH_density.png" width 2000
> transparentBackground true

> lighting gentle

> hide all models

> show #6 models

> hide #6 atoms

> show #6/d cartoons

> mmaker #6/d to #4/d

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker ORC-DNA_fit-to-j141.pdb, chain D (#4) with 5zr1, chain D (#6),
sequence alignment score = 618.6  
RMSD between 195 pruned atom pairs is 1.246 angstroms; (across all 366 pairs:
9.286)  
  

> color #6/d #b5bfdd

> color #6/g #fe5555

> clip off

> show #6/D:478 atoms

> color #6/D:478 byhetero

> show #6/g,h cartoons

> hide #6/H:52,53 cartoons

> show #6/H:52,53 atoms

> style #6/H:52,53 stick

Changed 41 atom styles  

> color #6/H:52,53 byhetero

> view ScORC_O4_loop

> clip off

> hide target abc

> show #6/d cartoons

> mmaker #6/d to #4/d

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker ORC-DNA_fit-to-j141.pdb, chain D (#4) with 5zr1, chain D (#6),
sequence alignment score = 618.6  
RMSD between 195 pruned atom pairs is 1.246 angstroms; (across all 366 pairs:
9.286)  
  

> color #6/d #b5bfdd

> color #6/g #fe5555

> clip off

> show #6/D:478 atoms

> color #6/D:478 byhetero

> show #6/g,h cartoons

> hide #6/H:52,53 cartoons

> show #6/H:52,53 atoms

> style #6/H:52,53 stick

Changed 41 atom styles  

> color #6/H:52,53 byhetero

> view ScORC_O4_loop

> clip off

> hide all models

> show #6 models

> hide target abc

> show #6/d cartoons

> mmaker #6/d to #4/d

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker ORC-DNA_fit-to-j141.pdb, chain D (#4) with 5zr1, chain D (#6),
sequence alignment score = 618.6  
RMSD between 195 pruned atom pairs is 1.246 angstroms; (across all 366 pairs:
9.286)  
  

> color #6/d #b5bfdd

> color #6/g #fe5555

> clip off

> show #6/D:478 target ab

> color #6/D:478 byhetero

> show #6/g,h cartoons

> hide #6/H:52,53 cartoons

> show #6/H:52,53 target ab

> style #6/H:52,53 stick

Changed 41 atom styles  

> color #6/H:52,53 byhetero

> view ScORC_O4_loop

> clip off

> show nucleic & sidechain

> nucleotides ladder

> nucleotides ladder

> nucleotides stubs

> nucleotides #6/H:52,53 atoms

> cartoon suppressBackboneDisplay false

> hide all models

> show #6 models

> hide target abc

> show #6/d cartoons

> mmaker #6/d to #4/d

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker ORC-DNA_fit-to-j141.pdb, chain D (#4) with 5zr1, chain D (#6),
sequence alignment score = 618.6  
RMSD between 195 pruned atom pairs is 1.246 angstroms; (across all 366 pairs:
9.286)  
  

> color #6/d #b5bfdd

> color #6/g #fe5555

> clip off

> show #6/D:478 target ab

> color #6/D:478 byhetero

> show #6/g,h cartoons

> hide #6/H:52,53 cartoons

> show #6/H:52,53 target ab

> nucleotides #6/H:52,53 atoms

> style #6/H:52,53 stick

Changed 41 atom styles  

> color #6/H:52,53 byhetero

> view ScORC_O4_loop

> clip off

> lighting soft

> hide all models

> show #6 models

> hide target abc

> show #6/d cartoons

> mmaker #6/d to #4/d

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker ORC-DNA_fit-to-j141.pdb, chain D (#4) with 5zr1, chain D (#6),
sequence alignment score = 618.6  
RMSD between 195 pruned atom pairs is 1.246 angstroms; (across all 366 pairs:
9.286)  
  

> color #6/d #b5bfdd

> color #6/g #fe5555

> clip off

> show (#6/D:478 & sidechain) target ab

> color byhetero

> show #6/g,h cartoons

> hide #6/H:52,53 cartoons

> show #6/H:52,53 target ab

> nucleotides #6/H:52,53 atoms

> style #6/H:52,53 stick

Changed 41 atom styles  

> color #6/H:52,53 byhetero

> view ScORC_O4_loop

> lighting soft

> clip off

> save "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\ScORC_O4_loop.png" width
> 2000 transparentBackground true

> hide target abc

> cartoon style nucleic xsection oval thickness 1 width 2.5

> cartoon suppressBackboneDisplay false

> color ligand black

> color ligand byhetero

> color /g red

> hide /f-g atoms

> show nucleic & sidechain

> nucleotides ladder

> color /a #55c087

> color /b #ffe255

> color /c #f6986c

> color /d #6b80bc

> color /e #aa7fba

> show #3 target c

> hide target ab

> show #1,3 models

> graphics silhouettes width 4 depthJump .01

> view DNA-map

> surface dust all

> volume #1 transparency .5

> hide all models

> show #1,3 models

> volume #1 transparency .5

> graphics silhouettes width 4 depthJump .01

> view DNA-map

> surface dust all

> view DNA-map

> nucleotides stubs

> surface dust all

> show nucleic & sidechain

> nucleotides stubs radius .3

> nucleotides stubs radius .45

> show #1,3 models

> volume #1 transparency .5

> volume #1 color #b2b2b2

> graphics silhouettes width 4 depthJump .01

> view DNA-map

> nucleotides stubs

> surface dust all

> volume #1 color #b2b2b2

> volume #1 level 0.0087

> volume #1 level 0.0088

> volume #1 level 0.0087

> volume #1 transparency .5

> volume #1 color #b2b2b2

> graphics silhouettes width 4 depthJump .01

> view DNA-map

> nucleotides stubs

> surface dust all

> volume #1 transparency .5

> save "C:\Users\mattj\Google Drive\CSHL\papers\x108\figures\fig4\DNA-map.png"
> width 2000 transparentBackground true

> save "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

opened ChimeraX session  

> hide #!2 models

> hide #!1 models

> clip off

> view name DNA-axis

> show (#3/a:591,595,596,626,628,629 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> colorby hetero

Unknown command: colorby hetero  

> color byhetero

> view DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-369 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> color byhetero

> view DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-369 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> color byhetero

> view DNA-axis

> nucleotides stubs

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-369 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target abc

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> nucleotides stubs

> color byhetero

> view DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-369 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> nucleotides stubs

> color byhetero

> view DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-369 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> show nucleic & sidechain

> nucleotides stubs

> color byhetero

> view DNA-axis

> view name DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-368 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> show nucleic & sidechain

> nucleotides stubs

> color byhetero

> view DNA-axis

> save "C:\Users\mattj\Google Drive\CSHL\papers\x108\figures\fig4\DNA-
> axis.png" width 2000 transparentBackground true

> show #3/c target c

> select #3/C:145

9 atoms, 8 bonds, 1 model selected  

> show #3/C:145 target ab

> hide all models

> show #3 models

> hide target abc

> show #3/a:587-604,625-631 target c

> show #3/b:362-368 target c

> show #3/c:144-157 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/c:145 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> show nucleic & sidechain

> nucleotides stubs

> color byhetero

> view DNA-axis

> select clear

> view name DNA-axis

> view name DNA-axis

> view name DNA-axis

> view name DNA-axis

> hide all models

> show #3 models

> hide target abc

> show #3/a:594-604,625-631 target c

> show #3/b:362-368 target c

> show #3/c:144-157 target c

> show #3/d:388-395 target c

> show #3/e:390-402 target c

> show #3/f,g target c

> show (#3/a:595,596,626,628,629 & sidechain) target ab

> show (#3/b:367 & sidechain) target ab

> show (#3/c:145 & sidechain) target ab

> show (#3/d:390 & sidechain) target ab

> show (#3/e:398 & sidechain) target ab

> show nucleic & sidechain

> nucleotides stubs

> color byhetero

> view DNA-axis

> save "C:\Users\mattj\Google Drive\CSHL\papers\x108\figures\fig4\DNA-
> axis.png" width 2000 transparentBackground true

> save "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

opened ChimeraX session  

> hide target abc

> cartoon style nucleic xsection oval thickness 1 width 2.5

> cartoon suppressBackboneDisplay false

> color ligand black

> color ligand byhetero

> color /g red

> hide /f-g atoms

> show nucleic & sidechain

> nucleotides ladder

> color /a #55c087

> color /b #ffe255

> color /c #f6986c

> color /d #6b80bc

> color /e #aa7fba

> show #3 target c

> hide target ab

> hide all models

> show #1,3 models

> volume #1 color #b2b2b2

> volume #1 transparency .5

> graphics silhouettes width 4 depthJump .01

> view DNA-map

> nucleotides stubs

> surface dust all

> show nucleic & sidechain

> clip

> clip far 1

> clip far 1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip near 1

> clip near 1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip near -1

> clip

> clip list

Using 3 clip planes:  
far offset 14.505, axis -0.687,0.589,0.425, point 183.3,164.3,171.2)  
front offset 0, axis 0.687,-0.589,-0.425, point 170.3,170.9,175.1)  
near offset -31, axis 0.687,-0.589,-0.425, point 149,189.2,188.3)  

> clip front 1

> clip front 1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> clip front -1

> graphics silhouettes

Current silhouette settings:  
enabled: True  
width: 4  
color: 0,0,0  
depth jump: 0.01  

> graphics silhouettes depthJump .02

> view name DNA_map_side

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far 1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far -1

> clip far 1

> clip far 1

> clip far -1

> clip far 1

> clip far 1

> clip far -1

> view name DNA_map_side

> view name DNA_map_side

> save "C:\\\Users\\\mattj\\\Google
> Drive\\\CSHL\\\papers\\\x108\\\figures\\\fig4\\\fig4.cxs"

Showing run_class001.seg - 8 regions, 8 surfaces  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\session.py", line 690, in restore  
obj = sm.restore_snapshot(self, data)  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\models.py", line 351, in restore_snapshot  
m.set_state_from_snapshot(session, data)  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\models.py", line 359, in set_state_from_snapshot  
p.add([self])  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\models.py", line 278, in add  
om.add(models, parent = self)  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\models.py", line 650, in add  
p = self._parent_for_added_model(model, parent, root_model = root_model)  
File "C:\Program Files\ChimeraX 1.1.dev202007180211\bin\lib\site-
packages\chimerax\core\models.py", line 718, in _parent_for_added_model  
% (model, self._models[model.id]))  
ValueError: Tried to add model 1872 #2.33 with the same id as another model
1872 #2.33  
  
opened ChimeraX session  




OpenGL version: 3.3.0 NVIDIA 442.92
OpenGL renderer: GeForce GTX 1050 Ti with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 20MFCTO1WW
OS: Microsoft Windows 10 Pro (Build 18362)
Memory: 33,922,240,512
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8850H CPU @ 2.60GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9

Change History (4)

comment:1 by pett, 5 years ago

Cc: Greg Couch added
Component: Unassigned → Sessions
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Session restore: Tried to add model with the same id as another model

Reported by Matt Jaremko

comment:2 by Tom Goddard, 5 years ago

The session file that gives an error on restore somehow has two models with the same id number #2.33, both named 1872. I don't know how that can happen. If I segment a map and save a session it restores correctly. Can you provide the session file? I don't need the map (which is not included in the session file).

comment:3 by Tom Goddard, 5 years ago

Also do you know when the session that causes the error was saved? ChimeraX 1.0 and older versions were not checking for duplicate model id numbers so I can imagine an older ChimeraX could have made two models with the same id number without raising an error. About two months ago (after ChimeraX 1.0) I added code that checks for duplicate model id numbers. You might also check if your session will open in ChimeraX 1.0 -- it might since that version did not check for duplicate id numbers.

comment:4 by Tom Goddard, 5 years ago

Resolution: → can't reproduce
Status: assigned → closed

No response from reporter. Can't reproduce.

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