Timeline



Apr 16, 2020:

8:40 PM Ticket #3068 (Crash starting ISOLDE) created by iche4489@…
[…]
8:26 PM Ticket #3067 (Bug reporter losing log text) created by goddard@…
[…] Screen Shot 2020-04-16 at 8.23.06 PM.png
8:20 PM Ticket #3066 (Actions menu: no visible models produces error) created by goddard@…
[…]
7:05 PM ChangeLog edited by Elaine Meng
(diff)
7:02 PM ChangeLog edited by Elaine Meng
(diff)
7:00 PM ChangeLog edited by Elaine Meng
(diff)
5:14 PM Ticket #3051 (Error building core related to version number changing) closed by Greg Couch
fixed: Fixed core to always regenerate the setup.py and buildinfo.py files …
4:36 PM ChangeLog edited by Elaine Meng
(diff)
3:59 PM Ticket #3065 (ISOLDE simulation stopped: 'OpenMM_Thread_Handler' object has no ...) created by josep.font@…
[…]
3:26 PM Ticket #3057 (pseudobond's atoms pb_scene_coord is None(?)) closed by Tom Goddard
fixed: Fixed. I changed Atom.ribbon_coord to return None instead of throwing …
12:56 PM Ticket #3064 (Adding images and descriptions to RBVI bundles) created by Elaine Meng
Conrad's subset from #3060 master list of bundles. After bundles have …
12:54 PM Ticket #3063 (Adding images and descriptions to RBVI bundles) created by Elaine Meng
Greg's subset from #3060 master list of bundles. After bundles have …
12:53 PM Ticket #3062 (Adding images and descriptions to RBVI bundles) created by Elaine Meng
Eric's subset from #3060 master list of bundles. After bundles have …
12:49 PM Ticket #3061 (Adding images and descriptions to RBVI bundles) created by Elaine Meng
TomG's subset from #3060 master list of bundles. After bundles have …
12:34 PM PhenixChimeraX edited by Tom Goddard
(diff)
11:56 AM Ticket #3060 (Adding images and descriptions to RBVI bundles) created by Conrad Huang
After bundles have been added to the toolshed, they need to be edited …
11:16 AM Ticket #3059 (Toolshed bundle release page does not work) reopened by Conrad Huang
It looks like my request gets into an authentication loop: GET …
11:01 AM Ticket #3059 (Toolshed bundle release page does not work) closed by Greg Couch
worksforme: Works for me. Maybe you tried it when I briefly broke it while …
10:51 AM Ticket #3059 (Toolshed bundle release page does not work) created by Conrad Huang
The bundle release page …
10:47 AM Ticket #3058 (Automate putting release (and daily) wheels on toolshed) created by Conrad Huang
When a release is made, all wheels other than core should be placed on …
10:42 AM Ticket #3057 (pseudobond's atoms pb_scene_coord is None(?)) created by Tristan Croll
[…]
10:32 AM Ticket #3054 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') closed by pett
duplicate: duplicate of #3024
10:18 AM Ticket #3050 (OpenMM: User-supplied template does not match the residue) closed by Tristan Croll
fixed: The traceback is suppressed in more recent ISOLDE builds, so closing …
10:14 AM Ticket #3052 (Toolbar icon image save → can't access Desktop) closed by pett
nonchimerax
9:02 AM Ticket #3056 (ISOLDE's ToolShed entry broken) closed by Greg Couch
fixed: The 1.0b5.1 has been removed. Will change bundle submission code to …
8:12 AM Ticket #3056 (ISOLDE's ToolShed entry broken) created by Tristan Croll
I'm afraid I just broke ISOLDE's ToolShed entry by uploading a bundle …
6:57 AM Ticket #3055 (Add ParmEd to ChimeraX's standard bundles) created by Tristan Croll
I think I brought this up once before, but can't find an existing …
3:02 AM Ticket #3054 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') created by chimerax-bug-report@…
[…]

Apr 15, 2020:

10:22 PM Ticket #3053 (Click logged command → crash) created by keiko.poop@…
[…]
7:37 PM Ticket #3052 (Toolbar icon image save → can't access Desktop) created by jeremy.force@…
[…]
6:50 PM Ticket #3051 (Error building core related to version number changing) created by goddard@…
[…]
2:28 PM Ticket #3050 (OpenMM: User-supplied template does not match the residue) created by didny1@…
[…]
2:22 PM Ticket #3049 (OpenMM coordinate update: RuntimeError: Release Object) created by didny1@…
[…]
2:13 PM Ticket #3046 (bundles missing in the Linux build?) closed by Greg Couch
fixed: Confirmed that there are no chimerax.atomic.rotamers.libs in the Linux …
9:35 AM Ticket #3048 (Graphics error drawing selection) closed by Tom Goddard
nonchimerax: Duplicate. Graphics driver problem with VMWare / Mesa 19.2.8 drawing …
8:56 AM Ticket #3045 (Merging models/fragments) closed by pett
not a bug: Information relevant to ticket #2236; referred to this ticket there
6:45 AM Ticket #3048 (Graphics error drawing selection) created by chimerax-bug-report@…
[…]
3:43 AM Ticket #3047 (Problem writing 'software' info to mmCIF) created by philipp.milkereit@…
[…]

Apr 14, 2020:

2:47 PM Ticket #3046 (bundles missing in the Linux build?) created by s.dallangelo@…
[…]
10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') closed by Tom Goddard
duplicate
10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') reopened by Tom Goddard
10:56 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') closed by Tom Goddard
fixed: Duplicate, fixed a few days ago.
8:52 AM Ticket #3045 (Merging models/fragments) created by Tristan Croll
I understand adding a "merge models" command has been on the to-do …
8:45 AM Ticket #3042 (Using wrong Linux distro?) closed by Tristan Croll
duplicate: Yep - duplicate of #2214. Should go away once people update to 0.93 …
7:50 AM Ticket #3044 (document pseudobond group create_type arg) created by Tristan Croll
[…]
6:29 AM Ticket #3043 (Save a residue as mmCIF template) created by Tristan Croll
Would be great to have the ability to save a given residue as a mmCIF …
3:30 AM Ticket #3038 (Restoring session: 'SymmetryManager' object has no attribute '_unit_cell') closed by Tristan Croll
fixed: Fixed. I'd like to get a couple of other things done before pushing a …
12:58 AM Ticket #3042 (Using wrong Linux distro?) created by chimerax-bug-report@…
[…]
12:05 AM Ticket #3009 (add ability to add software citations to mmCIF files) closed by Greg Couch
fixed: Was already working on this. Added …

Apr 13, 2020:

12:15 PM Ticket #3040 (Error with close session) closed by Greg Couch
fixed: Guard against state_containers changing during reset.
11:41 AM Ticket #3041 (cannot import name 'RibbonDrawing' from 'chimerax.atomic.ribbon') created by chimerax-bug-report@…
[…]
11:38 AM Ticket #3039 (crash in glDeleteBuffers) closed by Tom Goddard
can't reproduce: Probable graphics driver bug. "Graphics hardware encountered an error …
11:32 AM Ticket #3040 (Error with close session) created by pett
[…] orig.cxs
9:23 AM Ticket #3033 (OpenMM: 'coords' is None) closed by Tristan Croll
duplicate: Duplicate of #2990. Fixed in the latest build.
9:13 AM Ticket #3035 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') closed by pett
duplicate: duplicate of #3024

Apr 12, 2020:

10:25 AM Ticket #3039 (crash in glDeleteBuffers) created by chimerax-bug-report@…
[…]
6:48 AM Ticket #3038 (Restoring session: 'SymmetryManager' object has no attribute '_unit_cell') created by luca.jovine@…
[…]

Apr 11, 2020:

1:47 PM Ticket #3037 (Selection problems) created by shiran.barber-zucker@…
[…]
11:09 AM Ticket #3036 (Mouse hover over atoms gives error) closed by Tom Goddard
fixed: Fixed. Hover was trying to check for ribbon pick. Even though no …
11:00 AM Ticket #3036 (Mouse hover over atoms gives error) created by goddard@…
[…]
4:48 AM Ticket #3035 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') created by chimerax-bug-report@…
[…]
3:27 AM Ticket #3034 (Infrequent ISOLDE crash) created by Tristan Croll
[…]

Apr 10, 2020:

11:22 PM LinuxBuildSetup edited by Tom Goddard
(diff)
11:21 PM LinuxBuildSetup created by Tom Goddard
11:18 PM WikiStart edited by Tom Goddard
(diff)
10:55 AM PhenixChimeraX edited by Tom Goddard
(diff)
10:54 AM PhenixChimeraX created by Tom Goddard
10:50 AM WikiStart edited by Tom Goddard
(diff)
9:40 AM Ticket #3033 (OpenMM: 'coords' is None) created by chimerax-bug-report@…
[…]
8:50 AM Ticket #3032 (Crash during close) closed by pett
duplicate: Duplicate of #2895, fixed on 2/28/20
8:30 AM Ticket #3032 (Crash during close) created by chimerax-bug-report@…
[…]
12:41 AM linuxbundles edited by Greg Couch
(diff)
12:39 AM linuxbundles edited by Greg Couch
(diff)
12:37 AM linuxbundles created by Greg Couch
12:21 AM WikiStart edited by Greg Couch
(diff)
12:17 AM SourceCode edited by Greg Couch
(diff)
12:05 AM nightlydocker edited by Greg Couch
(diff)

Apr 9, 2020:

4:01 PM Ticket #3024 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') closed by Tom Goddard
fixed: We will start using version numbers like 0.94.dev202004031434 for …
3:58 PM Ticket #3031 (No partial dot surfaces) closed by Tom Goddard
fixed: Fixed. Got it, the whole surface was shown as dots even if it had a …
2:35 PM Ticket #3031 (No partial dot surfaces) created by pett
Once I added surface styles to the Actions menu, it became obvious …
1:12 PM Ticket #3030 (Add Label to Actions Menu) created by Scooter Morris
1:10 PM Ticket #3029 (Add Color to Actions Menu) created by Scooter Morris
Done except for Actions→Color→All Options... which is a stretch goal.
12:12 PM Ticket #2804 (Update ChimeraX dependencies) closed by Greg Couch
fixed: Done.
11:21 AM Ticket #3027 (Peptide builder should remove whitespace and catch non-peptide characters) closed by pett
fixed
10:06 AM Ticket #3028 (Crash during close) closed by pett
duplicate: duplicate of #2895
9:59 AM Ticket #3026 (Peptide builder should remove whitespace and catch non-peptide characters) closed by pett
duplicate: Duplicate of #3027
5:00 AM Ticket #3028 (Crash during close) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #3027 (Peptide builder should remove whitespace and catch non-peptide characters) created by SARA.IRANPARAST@…
[…]

Apr 8, 2020:

11:05 PM Ticket #3026 (Peptide builder should remove whitespace and catch non-peptide characters) created by chimerax-bug-report@…
[…]
6:00 PM Ticket #3025 (Installing bundle doesn't add its providers) created by pett
So when checking my updates to the developer tutorials, I noted that …
11:54 AM Ticket #2295 (Crash in OpenGL) closed by pett
fixed: Some changes went into the daily build which we hope will either fix …
11:51 AM Ticket #2976 (Crash closing dialog) closed by pett
fixed: I made use of the WA_DeleteOnClose flag where possible with these …
2:06 AM Ticket #3024 ('cartoon' command: 'Atoms' object has no attribute 'evaluate') created by chimerax-bug-report@…
[…]

Apr 7, 2020:

9:17 PM Ticket #3023 (Crash showing menu) created by jchen30@…
[…]
6:01 PM Ticket #2085 (Crash in Qt in Mac graphics driver) closed by pett
duplicate: I intend to try to rework window closing as per ticket #2976 and …
5:50 PM Ticket #2995 (threading crash) closed by pett
can't reproduce: Yes, please copy the ChimeraX app onto your machine rather than …
5:16 PM ChangeLog edited by pett
(diff)

Apr 6, 2020:

11:12 PM Ticket #3018 (Toolshed release history bug) closed by Greg Couch
fixed: Had accidentally switched to a lexical comparison.
1:55 PM ChangeLog edited by pett
(diff)
1:13 PM Ticket #3020 (SMILES conversion failure if string contains filesystem-relevant characters) closed by pett
fixed: It was indeed the '/' character that was the problem. Fixed now, and …
12:32 PM Ticket #3022 (ISOLDE used with incompatible ChimeraX) created by csrobb@…
[…]
12:05 PM Ticket #1857 (RFE: Blast Protein ability to show alignment for any subset of hits in ...) closed by Elaine Meng
fixed: I believe this is done. Tried it just now in case I was remembering wrong.
10:39 AM Ticket #3021 (ISOLDE: various errors) created by alfredo0712.florez@…
[…]
9:50 AM Ticket #3019 (FitMap's map button updating after tool closed) closed by pett
can't reproduce: Tried a few simple things, but couldn't reproduce.
9:41 AM Ticket #3017 (cellPACK: Collada scheme failure) closed by pett
duplicate: Duplicate of #3016
9:21 AM Ticket #3013 (Crash during close) closed by pett
duplicate: Hi Peter, This problem was fixed about 5 weeks ago, so if you get a …
8:20 AM Ticket #3020 (SMILES conversion failure if string contains filesystem-relevant characters) created by Elaine Meng
[…]
3:41 AM Ticket #3019 (FitMap's map button updating after tool closed) created by chimerax-bug-report@…
[…]
2:23 AM Ticket #3018 (Toolshed release history bug) created by Tristan Croll
[…]

Apr 5, 2020:

8:13 PM Ticket #3017 (cellPACK: Collada scheme failure) created by cmoscoso@…
[…]
7:22 PM Ticket #3016 (cellPACK: Collada scheme failure) created by cmoscoso@…
[…]

Apr 4, 2020:

4:17 PM Ticket #3015 (Crash in Finder(?)) created by prashant.k.singh@…
[…]
8:29 AM Ticket #3014 (Blast Protein tool: threading) created by Tom Goddard
[…]
2:34 AM Ticket #3013 (Crash during close) created by llsis@…
[…]

Apr 3, 2020:

9:44 PM ChangeLog edited by Greg Couch
(diff)
8:09 PM Ticket #3000 (Show / hide slow on very large structures due to change tracking) closed by Tom Goddard
fixed: Fixed. I've exclude atoms from the modified list on display and color …
6:39 PM Ticket #477 (cartoon: some tube-coil joins not so hot) closed by Tom Goddard
fixed: Fixed. Coil junctions with tube helix look much better with the …
6:22 PM Ticket #3012 (Tube helices have wrong curve) created by goddard@…
[…]
3:52 PM Ticket #2809 (make ChimeraX website documentation URL point to vdocs) closed by Greg Couch
fixed: Done.
3:14 PM Ticket #1673 (Linux flavor ABI incompatibility) closed by Greg Couch
fixed: Currently using CentOS 7 binary bundles on all Linux variants, so …
3:11 PM Ticket #2693 (Problem importing surface module due to missing libstdc++.so.6) closed by Greg Couch
fixed: This should have been fixed by switching to use CentOS 7 binary …
3:10 PM Ticket #2956 (KeyError reading mmCIF) closed by Greg Couch
can't reproduce: No response to request for problematic mmCIF file.
12:14 PM Milestone 0.93 completed
Refactor bundleinfo.xml: * I/O section tags Update toolshed: * …
10:40 AM Ticket #477 (cartoon: some tube-coil joins not so hot) reopened by Tom Goddard
I've attached an image 1a0s_407_ mesh.png that shows the exact way …
10:00 AM Ticket #3011 (Disconnected hydrogens in 6rhz) created by lpravda@…
In entry 6rhz, the following hydrogens have no bonds: /B CLA 1238 …
8:37 AM Ticket #2919 ("sequence chain" fails after chain lengthened) reopened by pett
Well, you did say "the bug arises specifically when you add a residue …
6:02 AM Ticket #2965 (Clipper: 'XmapHandler_Live' object has no attribute 'set_display_style') closed by Tristan Croll
fixed
6:01 AM Ticket #2972 (Weird problem reading Amber CMAP terms) closed by Tristan Croll
can't reproduce: Don't think this has anything to do with ISOLDE per se. Just looks …
5:01 AM Ticket #2998 (Clipper symmetry: self.structure is None) closed by Tristan Croll
fixed: Fixed. The Clipper data layout originally wasn't really designed to …

Apr 2, 2020:

5:46 PM Ticket #3008 (Residues not organized correctly) closed by Greg Couch
fixed: Sorry about that. Should be fixed now.
4:04 PM Ticket #477 (cartoon: some tube-coil joins not so hot) closed by Tom Goddard
not a bug: I'm not sure what "pretty poor" tube helix coil junctions means. It …
3:22 PM Ticket #3010 (Speed up ribbon helix tubes) created by Tom Goddard
Ribbon helix tube display is much slower than normal ribbons. For PDB …
3:06 PM Ticket #3007 (Cartoon tube helix error) closed by Tom Goddard
fixed: Fixed. Helix tube radius was uninitialized. Set initial value to 2.0.
2:11 PM Ticket #3006 (File→Open crash) closed by pett
duplicate: Duplicate of
12:39 PM Ticket #2496 (macOS Catalina can't verify daily build, signing problem) closed by Conrad Huang
fixed: MacOS code signing has been replaced by notarization.
12:37 PM Ticket #3009 (add ability to add software citations to mmCIF files) created by Greg Couch
Make it so tools can add citations to model metadata so it will be …
12:29 PM Ticket #2983 (Want support for PEP 440 ~= dependencies) closed by Greg Couch
fixed: Done
12:17 PM Ticket #3008 (Residues not organized correctly) created by Ben Webb
[…]
11:57 AM Ticket #3007 (Cartoon tube helix error) created by goddard@…
[…]
10:59 AM Ticket #3006 (File→Open crash) created by prashant.k.singh@…
[…]
10:37 AM Ticket #3005 (File→Open crash) created by prashant.k.singh@…
[…]
10:06 AM Ticket #3004 (Save dialog → PNG image → several errors) closed by pett
fixed: Fix(es) available in next build.
6:52 AM Ticket #2990 (isolde.openmm.openmm_interface: 'coords' is None) closed by Tristan Croll
fixed
3:33 AM Ticket #3004 (Save dialog → PNG image → several errors) created by sitins07@…
[…]

Apr 1, 2020:

4:59 PM Ticket #3001 (Session save slow with molecular surfaces) closed by Tom Goddard
fixed: I made session save not compress. This gives 20x faster write, 3x …
1:31 PM Ticket #3002 (open2 'dataFormat' should accept/expect nicknames) closed by pett
fixed: 'dataFormat' now the same as 'format': only accepts nicknames (more …
1:29 PM Ticket #3003 (open2 'dataFormat' with full format name not working with sequences ...) closed by pett
fixed: 'format' was the same -- it was a problem in the alignments bundle
12:11 PM Ticket #3003 (open2 'dataFormat' with full format name not working with sequences ...) created by ben@…
chimerax/seqalign/parse.py tries to use a parser based on the full …
12:09 PM Ticket #3002 (open2 'dataFormat' should accept/expect nicknames) created by ben@…
Currently only accepts full format names
10:43 AM Ticket #3001 (Session save slow with molecular surfaces) created by goddard@…
[…]
10:33 AM Ticket #300 (Control over tool (and data ownership) used when data opened) closed by pett
wontfix: I think the bundle that registers the "opener" function for the data …
10:29 AM Ticket #1519 (Restrict open/save keyword handling to those relevant for that format) closed by pett
fixed
10:26 AM Ticket #2806 (Refactor bundleinfo.xml) closed by pett
fixed

Mar 31, 2020:

7:26 PM Ticket #3000 (Show / hide slow on very large structures due to change tracking) created by Tom Goddard
Show and hide commands for atoms on large structure such as 6q3g (1 …
10:43 AM Ticket #2987 (Random crashes) closed by Tom Goddard
can't reproduce: Justin has ISOLDE working on Linux. The crashes using ISOLDE on …
10:40 AM Ticket #2999 (Session support missing for Map Eraser) closed by Tom Goddard
fixed: Fixed. The error saving a session with the map eraser sphere showing …
10:04 AM Ticket #2997 (settings error-reporting using non-existent attribute) closed by pett
duplicate: Hi Fengwei, I have fixed the main error in this report, which was a …
9:57 AM Ticket #2996 (settings error-reporting using non-existent attribute) closed by pett
fixed
3:09 AM Ticket #2999 (Session support missing for Map Eraser) created by caillancm@…
[…]

Mar 30, 2020:

6:33 PM Ticket #2998 (Clipper symmetry: self.structure is None) created by chimerax-bug-report@…
[…]
12:41 PM Ticket #2997 (settings error-reporting using non-existent attribute) created by Fengwei.Zheng@…
[…]
12:21 PM Ticket #2996 (settings error-reporting using non-existent attribute) created by chimerax-bug-report@…
[…]
10:17 AM Ticket #2991 (Graphics error drawing selection) closed by Tom Goddard
duplicate: This has been reported several times, glBlitFramebuffer error, I …
10:10 AM Ticket #2989 (ISOLDE referencing a Structure that's been deleted) closed by pett
duplicate: Seems like a duplicate of #2992 (although that one's Mac) and #2992
10:02 AM Ticket #2995 (threading crash) created by kartik.manne@…
[…]
8:55 AM Ticket #2994 (Nucleotides trying to save closed structure) created by chimerax-bug-report@…
[…]
8:04 AM Ticket #2993 (KeyError picking ribbon) created by chimerax-bug-report@…
[…]
12:02 AM Ticket #2992 (ISOLDE referencing a Structure that's been deleted) created by kartik.manne@…
[…]

Mar 29, 2020:

11:32 PM Ticket #2991 (Graphics error drawing selection) created by chimerax-bug-report@…
[…]
7:43 PM Ticket #2990 (isolde.openmm.openmm_interface: 'coords' is None) created by kartik.manne@…
[…]
11:14 AM Ticket #2989 (ISOLDE referencing a Structure that's been deleted) created by chimerax-bug-report@…
[…]

Mar 28, 2020:

10:00 AM Ticket #2988 (Session save: 'NoneType' object has no attribute 'array') closed by pett
duplicate: Hi, This problem was fixed awhile ago. Please upgrade to the 0.92 …
9:53 AM Ticket #2988 (Session save: 'NoneType' object has no attribute 'array') created by Fengwei.Zheng@…
[…]
8:06 AM Ticket #2987 (Random crashes) created by justin.ditrani@…
[…]

Mar 27, 2020:

1:35 PM Ticket #2986 (Problem restoring session) closed by pett
duplicate: Hi Lynette, This problem was fixed a few weeks back, so if you …
1:01 PM Ticket #2986 (Problem restoring session) created by lynnettj@…
[…] 1RTD_PuglisiLabColoring.cxs
11:18 AM Ticket #2985 (Crash drawing Qt interface) closed by pett
duplicate
10:51 AM Ticket #2985 (Crash drawing Qt interface) created by chimerax-bug-report@…
[…]
9:09 AM Ticket #2982 (tool instance already removed from dict) closed by pett
can't reproduce: Intend to rework the way windows get destroyed anyway
9:02 AM Ticket #2981 (ChimeraX bug report submission) closed by pett
duplicate
9:01 AM Ticket #2980 (Crash drawing Qt interface) closed by pett
duplicate
6:59 AM Ticket #2984 (AddH: N-linked glycans) created by Tristan Croll
[…]

Mar 26, 2020:

7:19 PM Ticket #2983 (Want support for PEP 440 ~= dependencies) created by Greg Couch
PEP 440 ~= compatible release operator limits dependencies to the …
3:49 PM Ticket #2982 (tool instance already removed from dict) created by chimerax-bug-report@…
[…]
1:31 PM Ticket #2979 (Every residue is 48) closed by Greg Couch
fixed: Bug was with how a missing optional auth_seq_id was handled. Fixed now.
12:57 PM Ticket #2981 (ChimeraX bug report submission) created by chimerax-bug-report@…
[…]
12:41 PM Ticket #2980 (Crash drawing Qt interface) created by chimerax-bug-report@…
[…]
11:13 AM Ticket #2979 (Every residue is 48) created by Ben Webb
[…] PDBDEV_00000018.cif
10:56 AM Ticket #2978 (Side view affects image saving) closed by Tom Goddard
fixed: Fixed. Your poor quality image was at half resolution, ie half the …
9:00 AM Ticket #2978 (Side view affects image saving) created by lucastafurp@…
[…] example_ChimeraX.png
8:45 AM Ticket #2977 (Crash closing dialog) closed by pett
duplicate: duplicate of #2976

Mar 25, 2020:

11:42 PM Ticket #2977 (Crash closing dialog) created by chimerax-bug-report@…
[…]
11:22 PM Ticket #2976 (Crash closing dialog) created by chimerax-bug-report@…
[…]
11:05 AM Ticket #2974 (Selection outline error? (glBlitFramebuffer: invalid operation)) closed by Tom Goddard
can't reproduce: This has been reported several times, always with Linux and VMWare …
9:42 AM Ticket #2975 (ChimeraX documentation down) closed by Greg Couch
fixed: Thanks for the bug report. It is fixed now.
9:32 AM Ticket #2975 (ChimeraX documentation down) created by jyelland@…
[…]
4:59 AM Ticket #2974 (Selection outline error? (glBlitFramebuffer: invalid operation)) created by chimerax-bug-report@…
[…]

Mar 23, 2020:

6:10 PM Ticket #2973 (Numpy type problem reading .cmap file) closed by Tom Goddard
fixed: Fixed. Chimera map files containing symmetries as float32 (as written …
4:10 PM Ticket #2971 (Crash drawing Qt interface) closed by pett
can't reproduce
4:08 PM Ticket #2973 (Numpy type problem reading .cmap file) created by pett
[…]
3:16 PM Ticket #2972 (Weird problem reading Amber CMAP terms) created by chimerax-bug-report@…
[…]
2:15 PM Ticket #2971 (Crash drawing Qt interface) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #2969 (addh: metal-clash proton stripping) closed by pett
fixed: The added-hydrogen-to-metal distance of 2.955 for Cys B77 is beginning …
9:04 AM Ticket #2970 (opening mmCIF but saving PDB loses "seqres" info) created by Elaine Meng
Example structure 6vxx. This information is preserved after opening …
8:49 AM Ticket #2968 (Crash drawing Qt interface) closed by pett
duplicate: Same as
8:48 AM Ticket #2967 (Crash drawing Qt interface) closed by pett
duplicate: Same as
1:15 AM Ticket #2969 (addh: metal-clash proton stripping) created by Tristan Croll
[…]

Mar 21, 2020:

7:02 PM Ticket #2968 (Crash drawing Qt interface) created by llsis@…
[…]
6:32 PM Ticket #2967 (Crash drawing Qt interface) created by llsis@…
[…]
6:23 PM Ticket #2966 (Crash drawing Qt interface) created by llsis@…
[…]

Mar 20, 2020:

8:50 AM Ticket #2962 (Crash drawing Qt interface) closed by pett
can't reproduce
3:17 AM Ticket #2965 (Clipper: 'XmapHandler_Live' object has no attribute 'set_display_style') created by folf@…
[…]

Mar 19, 2020:

4:30 PM Ticket #2964 (Command-history change wipes command-entry text) created by goddard@…
[…]
4:04 PM Ticket #2963 (Open dialog mishandles symbolic links) created by goddard@…
[…]
2:23 PM Ticket #2962 (Crash drawing Qt interface) created by chimerax-bug-report@…
[…]
8:48 AM Ticket #2960 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) closed by pett
duplicate: Duplicate of #2959

Mar 18, 2020:

2:24 PM Ticket #2961 (Tips for remote use) created by Tristan Croll
With the current rapidly-evolving situation, there's suddenly a whole …
11:27 AM Ticket #2959 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) closed by Tom Goddard
can't reproduce: This is on macOS Catalina where you have to allow access to Downloads, …
10:37 AM Ticket #2960 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) created by chimerax-bug-report@…
[…]
8:55 AM Ticket #2957 (have Blast Protein report resolution) closed by Elaine Meng
fixed: it's documented, at least: …
8:37 AM Ticket #2958 (Crash in Qt on exit) closed by pett
can't reproduce
7:12 AM Ticket #2959 (CrashReporter can't access ~/Library/Logs/DiagnosticReports) created by chimerax-bug-report@…
[…]
4:47 AM Ticket #2958 (Crash in Qt on exit) created by chimerax-bug-report@…
[…]
1:43 AM Ticket #2957 (have Blast Protein report resolution) created by Tristan Croll
[…]

Mar 17, 2020:

10:03 AM Ticket #2956 (KeyError reading mmCIF) created by dirk.fahrenkamp@…
[…]
Note: See TracTimeline for information about the timeline view.