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Opened 6 years ago
Closed 6 years ago
#3004 closed defect (fixed)
Save dialog → PNG image → several errors
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 0.93 (2020-04-01) Description saving image in PNG format, supersample 4x4 Log: UCSF ChimeraX version: 0.93 (2020-04-01) © 2016-2020 Regents of the University of California. All rights reserved. > open "X:\Work\Projects\ArfB-1\Chimera\Figure 2a 23S_2.cxs" format session Log from Wed Apr 1 12:32:16 2020UCSF ChimeraX version: 0.93 (2020-03-14) © 2016-2020 Regents of the University of California. All rights reserved. > open "D:\Lab\Projects\ArfB\Chimera\Figure 2a 23S.cxs" format session Log from Tue Mar 31 16:44:10 2020UCSF ChimeraX version: 0.93 (2020-03-14) © 2016-2020 Regents of the University of California. All rights reserved. > open D:\Lab\Projects\ArfB\Chimera\Figure2_2.cxs format session Log from Mon Mar 30 19:36:10 2020UCSF ChimeraX version: 0.93 (2020-03-14) © 2016-2020 Regents of the University of California. All rights reserved. > open D:\Lab\Projects\ArfB\Chimera\Figure2_1.cxs format session Log from Mon Mar 30 18:24:34 2020UCSF ChimeraX version: 0.93 (2020-03-14) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open D:/Lab/Projects/ArfB/Chimera/3d288_rotated_arfb_32A.mrc > D:/Lab/Projects/ArfB/Chimera/3d512_ptrna_arfb_26A.mrc > D:/Lab/Projects/ArfB/Chimera/3d512_ptrna_noarfb_31A.mrc > D:/Lab/Projects/ArfB/Chimera/324_claudia_ptrna_1.072_3.7.mrc > D:/Lab/Projects/ArfB/Chimera/p+0_claudia_final.pdb > D:/Lab/Projects/ArfB/Chimera/P+9_gs_final.pdb > D:/Lab/Projects/ArfB/Chimera/P+9_No_ArfB-final.pdb > D:/Lab/Projects/ArfB/Chimera/P+9_petrna_final.pdb Summary of feedback from opening files --- warnings | Ignored bad PDB record found on line 147552 END Ignored bad PDB record found on line 148167 END Ignored bad PDB record found on line 146868 END Ignored bad PDB record found on line 147698 END Opened 3d288_rotated_arfb_32A.mrc, grid size 288,288,288, pixel 1.16, shown at level 4.47, step 2, values float32 Chain information for p+0_claudia_final.pdb #1.5 --- Chain | Description 0 | No description available 1 | No description available 2 | No description available 3 | No description available 4 | No description available 5 | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available N | No description available O | No description available P | No description available Q | No description available R | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available a | No description available b | No description available c | No description available d | No description available e | No description available f | No description available g | No description available h | No description available i | No description available j | No description available k | No description available l | No description available m | No description available n | No description available o | No description available p | No description available q | No description available r | No description available s | No description available t | No description available u | No description available v | No description available w | No description available x | No description available y | No description available Chain information for P+9_gs_final.pdb #1.6 --- Chain | Description 0 | No description available 1 | No description available 2 | No description available 3 | No description available 4 | No description available 5 | No description available 6 | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available N | No description available O | No description available P | No description available Q | No description available R | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available a | No description available b | No description available c | No description available d | No description available e | No description available f | No description available g | No description available h | No description available i | No description available j | No description available k | No description available l | No description available m | No description available n | No description available o | No description available p | No description available q | No description available r | No description available s | No description available t | No description available u | No description available v | No description available w | No description available x | No description available y | No description available Chain information for P+9_No_ArfB-final.pdb #1.7 --- Chain | Description 0 | No description available 1 | No description available 2 | No description available 3 | No description available 4 | No description available 5 | No description available 6 | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available N | No description available O | No description available P | No description available Q | No description available R | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available a | No description available b | No description available c | No description available d | No description available e | No description available f | No description available g | No description available h | No description available i | No description available j | No description available k | No description available l | No description available m | No description available n | No description available o | No description available p | No description available q | No description available r | No description available s | No description available t | No description available u | No description available w | No description available x | No description available Chain information for P+9_petrna_final.pdb #1.8 --- Chain | Description 0 | No description available 1 | No description available 2 | No description available 3 | No description available 4 | No description available 5 | No description available 6 | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available H | No description available I | No description available J | No description available K | No description available L | No description available M | No description available N | No description available O | No description available P | No description available Q | No description available R | No description available S | No description available T | No description available U | No description available V | No description available W | No description available X | No description available Y | No description available Z | No description available a | No description available b | No description available c | No description available d | No description available e | No description available f | No description available g | No description available h | No description available i | No description available j | No description available k | No description available l | No description available m | No description available n | No description available o | No description available p | No description available q | No description available r | No description available s | No description available t | No description available u | No description available v | No description available w | No description available x | No description available y | No description available > select #1.1 2 models selected > ~select #1.1 Nothing selected > hide #!1.1 models > hide #!1.2 models > hide #!1.3 models > hide #!1.4 models > hide #!1.8 models > hide #!1.7 models > hide #!1.6 models > hide #!1.5 models > select 586269 atoms, 635220 bonds, 1974 pseudobonds, 18 models selected > style sel stick Changed 586269 atom styles > hide sel cartoons > hide sel atoms > show sel cartoons > volume #1.1 step 1 > volume #1.2 step 1 > volume #1.3 step 1 > volume #1.4 step 1 > show #!1.5 models > lighting full > lighting shadows false > ui mousemode rightMode select > select clear > toolshed show "Build Structure" > hide #!1.5 models > show #!1.5 models > show #!1.6 models > hide #!1.6 models > hide #!1.5 models > show #!1.6 models > select #1.6 147051 atoms, 159240 bonds, 580 pseudobonds, 2 models selected > select #1.6/A 62616 atoms, 69817 bonds, 401 pseudobonds, 2 models selected > molmap sel 2.6 onGrid #1.2 > hide #!2 models > mmaker #1.5/A to #1.6/A matrix Nucleic Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker P+9_gs_final.pdb, chain A (#1.6) with p+0_claudia_final.pdb, chain A (#1.5), sequence alignment score = 11578.4 RMSD between 2744 pruned atom pairs is 0.557 angstroms; (across all 2903 pairs: 0.978) > mmaker #1.7/A to #1.6/A matrix Nucleic Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker P+9_gs_final.pdb, chain A (#1.6) with P+9_No_ArfB-final.pdb, chain A (#1.7), sequence alignment score = 11578.4 RMSD between 2787 pruned atom pairs is 0.396 angstroms; (across all 2903 pairs: 0.798) > mmaker #1.8/A to #1.6/A matrix Nucleic Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | Nucleic SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker P+9_gs_final.pdb, chain A (#1.6) with P+9_petrna_final.pdb, chain A (#1.8), sequence alignment score = 11573.5 RMSD between 2709 pruned atom pairs is 0.458 angstroms; (across all 2903 pairs: 2.688) > select clear > show #!1.5 models > hide #!1.6 models > hide #!1.5 models > show #!1.4 models > volume #1.4 sdLevel 4 > volume #1.4 level 3.113 > volume #1.4 level 2.078 > rename #1.1 id 3.3 > rename #1.2 id 3.4 > rename #3.4 id 3.2 > rename #1.3 id 3.4 > rename #1.4 id 3.1 > rename #3 Maps > rename #1.5 id 1.1 > rename #1.5 id 1.2 > rename #1.8 id 1.3 > rename #1.6 id 1.2 > rename #1.7 id 1.4 > rename #1 Models > rename #2 23S > save session D:/Lab/Projects/ArfB/Chimera/Figure2.cxs includeMaps true > show #!1.1 models Invalid "metric" argument: Should be one of 'cam', 'correlation', or 'overlap' > fitmap #3.1 inMap #2 metric correlation Fit map 324_claudia_ptrna_1.072_3.7.mrc in map 23S using 1102761 points correlation = 0.579, correlation about mean = 0.4055, overlap = 1.685e+06 steps = 168, shift = 11, angle = 3.71 degrees Position of 324_claudia_ptrna_1.072_3.7.mrc (#3.1) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99792770 -0.05315753 0.03625727 -2.53830042 0.05289154 0.99856613 0.00825689 -17.08448252 -0.03664420 -0.00632207 0.99930838 0.94521975 Axis -0.11256770 0.56288990 0.81883055 Axis point 229.91471899 -74.83404267 -0.00000000 Rotation angle (degrees) 3.71286753 Shift along axis -8.55697722 > fitmap #3.2 inMap #2 metric correlation Fit map 3d512_ptrna_arfb_26A.mrc in map 23S using 1342419 points correlation = 0.6958, correlation about mean = 0.3994, overlap = 7.674e+06 steps = 80, shift = 0.00542, angle = 0.00228 degrees Position of 3d512_ptrna_arfb_26A.mrc (#3.2) relative to 23S (#2) coordinates: Matrix rotation and translation 1.00000000 -0.00002444 0.00001125 -0.00062004 0.00002444 1.00000000 -0.00002943 0.00035016 -0.00001125 0.00002943 1.00000000 0.00147492 Axis 0.73810274 0.28203568 0.61291127 Axis point 0.00000000 -38.75732867 6.67395655 Rotation angle (degrees) 0.00228490 Shift along axis 0.00054510 > fitmap #3.3 inMap #2 metric correlation Fit map 3d288_rotated_arfb_32A.mrc in map 23S using 238600 points correlation = 0.7002, correlation about mean = 0.3851, overlap = 9.462e+05 steps = 112, shift = 1.53, angle = 3.87 degrees Position of 3d288_rotated_arfb_32A.mrc (#3.3) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99916965 0.03703166 -0.01698992 -2.27698178 -0.03606361 0.99788268 0.05412561 -2.64520732 0.01895830 -0.05346795 0.99838958 6.45201704 Axis -0.79728322 -0.26638129 -0.54164608 Axis point 0.00000000 109.05202579 57.93452048 Rotation angle (degrees) 3.86897939 Shift along axis -0.97467661 > fitmap #3.4 inMap #2 metric correlation Fit map 3d512_ptrna_noarfb_31A.mrc in map 23S using 1339710 points correlation = 0.6712, correlation about mean = 0.3295, overlap = 5.503e+06 steps = 68, shift = 0.179, angle = 0.232 degrees Position of 3d512_ptrna_noarfb_31A.mrc (#3.4) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99999282 0.00334989 0.00176944 -0.90428166 -0.00334735 0.99999337 -0.00143191 0.64549581 -0.00177422 0.00142598 0.99999741 -0.01050688 Axis 0.35291151 0.43759574 -0.82702081 Axis point 195.96536251 267.41652431 0.00000000 Rotation angle (degrees) 0.23199217 Shift along axis -0.02797578 > select #1.1/a-u 51854 atoms, 55983 bonds, 245 pseudobonds, 2 models selected Must specify one map, got 0 > molmap sel 3 onGrid #3.2 > show #!2 models > hide #!2 models > rename #3 Maps > close #3.2-4 > open D:/Lab/Projects/ArfB/Chimera/3d288_rotated_arfb_32A.mrc > D:/Lab/Projects/ArfB/Chimera/3d512_ptrna_arfb_26A.mrc > D:/Lab/Projects/ArfB/Chimera/3d512_ptrna_noarfb_31A.mrc > D:/Lab/Projects/ArfB/Chimera/324_claudia_ptrna_1.072_3.7.mrc Opened 3d288_rotated_arfb_32A.mrc, grid size 288,288,288, pixel 1.16, shown at level 4.47, step 2, values float32 > volume #4.1 step 1 > close #3 > rename #4.4 id #3.1 > rename #4.2 id #3.2 > rename #4.1 id #3.3 > rename #4.3 id #3.4 > select #4 1 model selected > ~select #4 Nothing selected > close #4 > rename #3 Maps > fitmap #3.1 inMap #2 metric correlation Fit map 324_claudia_ptrna_1.072_3.7.mrc in map 23S using 42497 points correlation = 0.655, correlation about mean = 0.3224, overlap = 1.557e+05 steps = 176, shift = 11.3, angle = 3.73 degrees Position of 324_claudia_ptrna_1.072_3.7.mrc (#3.1) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99791221 -0.05334635 0.03640581 -2.50206600 0.05307634 0.99855560 0.00834382 -17.14432441 -0.03679833 -0.00639412 0.99930226 0.99560606 Axis -0.11336261 0.56307807 0.81859148 Axis point 230.23809154 -74.09254133 0.00000000 Rotation angle (degrees) 3.72705652 Shift along axis -8.55495776 > fitmap #3.2 inMap #2 metric correlation Fit map 3d512_ptrna_arfb_26A.mrc in map 23S using 167697 points correlation = 0.696, correlation about mean = 0.3972, overlap = 9.59e+05 steps = 60, shift = 0.00522, angle = 0.00796 degrees Position of 3d512_ptrna_arfb_26A.mrc (#3.2) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99999999 0.00009716 -0.00009918 -0.00486473 -0.00009716 1.00000000 0.00000297 0.01412873 0.00009918 -0.00000296 1.00000000 -0.01466910 Axis -0.02132944 -0.71415869 -0.69965879 Axis point 145.95055894 0.00000000 -49.00529528 Rotation angle (degrees) 0.00795687 Shift along axis 0.00027697 > fitmap #3.3 inMap #2 metric correlation Fit map 3d288_rotated_arfb_32A.mrc in map 23S using 238600 points correlation = 0.7002, correlation about mean = 0.3851, overlap = 9.462e+05 steps = 112, shift = 1.53, angle = 3.87 degrees Position of 3d288_rotated_arfb_32A.mrc (#3.3) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99916965 0.03703166 -0.01698992 -2.27698178 -0.03606361 0.99788268 0.05412561 -2.64520732 0.01895830 -0.05346795 0.99838958 6.45201704 Axis -0.79728322 -0.26638129 -0.54164608 Axis point 0.00000000 109.05202579 57.93452048 Rotation angle (degrees) 3.86897939 Shift along axis -0.97467661 > fitmap #3.4 inMap #2 metric correlation Fit map 3d512_ptrna_noarfb_31A.mrc in map 23S using 167718 points correlation = 0.6716, correlation about mean = 0.3272, overlap = 6.885e+05 steps = 64, shift = 0.18, angle = 0.236 degrees Position of 3d512_ptrna_noarfb_31A.mrc (#3.4) relative to 23S (#2) coordinates: Matrix rotation and translation 0.99999275 0.00338870 0.00173713 -0.90655020 -0.00338597 0.99999303 -0.00157265 0.67692411 -0.00174245 0.00156675 0.99999725 -0.04725617 Axis 0.38110225 0.42239830 -0.82239938 Axis point 201.95520431 265.62652942 0.00000000 Rotation angle (degrees) 0.23599292 Shift along axis -0.02069328 > save session D:/Lab/Projects/ArfB/Chimera/Figure2_1.cxs includeMaps true > volume #!3.1-4 step 1 > hide #!3.4 models > show #!3.4 models > save session D:/Lab/Projects/ArfB/Chimera/Figure2_1.cxs includeMaps true opened ChimeraX session > lighting full > select #1.1/a-u 51854 atoms, 55983 bonds, 245 pseudobonds, 2 models selected > volume zone #3.1 nearAtoms sel range 3 > ui mousemode rightMode select > select clear > select #1.1/1-Z 91150 atoms, 99002 bonds, 391 pseudobonds, 2 models selected > volume zone #3.1 nearAtoms sel range 3 > select clear > select #1.1/w:67 20 atoms, 21 bonds, 1 model selected > select up 1631 atoms, 1822 bonds, 1 model selected > volume zone #3.1 nearAtoms sel range 3 > select #1.1/y:95 8 atoms, 7 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > volume zone #3.1 nearAtoms sel range 3 > select #1.1/v:15 10 atoms, 10 bonds, 1 model selected > select up 121 atoms, 128 bonds, 1 model selected > volume zone #3.1 nearAtoms sel range 3 > select #1.1/x:18 20 atoms, 21 bonds, 1 model selected > select up 125 atoms, 138 bonds, 1 model selected > volume zone #3.1 nearAtoms sel range 3 > select clear > hide #!1.1 models > select #5 2 models selected > volume #4 color #b2b2b201 > volume #4 color #b2b2b20c > volume #4 color #b2b2b278 > set bgColor white > select clear > volume #7 level 4.479 > volume #4 level 4 > volume #5 level 4 > volume #4 color #01b2b278 > volume #4 color #10b2b278 > volume #4 color #a0b2b278 > volume #4 color #a001b278 > volume #4 color #a010b278 > volume #4 color #a0a0b278 > volume #4 color #a0a00178 > volume #4 color #a0a01078 > volume #4 color #a0a0a078 > volume #5 color #01ffb2 > volume #5 color #0cffb2 > volume #5 color #78ffb2 > volume #5 color #0cffb2 > volume #5 color #01ffb2 > volume #5 color #09ffb2 > volume #5 color #5affb2 > volume #5 color #09ffb2 > volume #5 color #01ffb2 > volume #5 color #12ffb2 > volume #5 color #b4ffb2 > volume #5 color #b402b2 > volume #5 color #b41cb2 > volume #5 color #b41cb3 > volume #5 color #b41cb4 > volume #5 color #b401b4 > volume #5 color #b412b4 > volume #5 color #b4b4b4 > volume #5 color #b4b4b401 > volume #5 color #b4b4b40c > volume #5 color #b4b4b478 > volume #4 color #01a0a078 > volume #4 color #0ca0a078 > volume #4 color #78a0a078 > volume #4 color #7801a078 > volume #4 color #780ca078 > volume #4 color #7878a078 > volume #4 color #78780178 > volume #4 color #78780c78 > volume #4 color #78787878 > select #6 2 models selected > color sel deep sky blue > volume #6 level 4 > volume #6 level 3 > select clear > volume #7 level 1.455 > volume #7 color #02b2ff > volume #7 color #19b2ff > volume #7 color #ffb2ff > volume #7 color magenta > volume #7 color red > volume #7 level 1.871 > volume #7 level 2 > volume #5 level 4.155 > volume #4 level 2 > show #!1.1 models > select #1.1/y:101 9 atoms, 8 bonds, 1 model selected > select up 100 atoms, 101 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > volume zone #3.1 nearAtoms sel range 2 > volume #10 color #02ffb2 > volume #10 color #19ffb2 > volume #10 color #ffffb2 > volume #10 color #ff00b2 > volume #10 color red > volume #10 level 2.94 > volume #10 level 2 > hide #!1.1 models > volume #9 level 2 > volume #9 color #feb2b2 > volume #9 color #00b2b2 > volume #9 color #0002b2 > volume #9 color #0019b2 > volume #9 color #00ffb2 > volume #9 color lime > select #8 2 models selected > color sel orange > volume #8 level 2 > select clear > select #8 2 models selected > color sel dark orange > select clear > volume #5 color #b4b4b408 > volume #5 color #b4b4b450 > volume #4 level 1.5 > volume #4 level 1.7 > volume #5 level 1.7 > volume #6 level 1.7 > volume #5 level 2 > volume #6 level 2 > volume #4 level 2 > volume #8 level 1.761 > volume #8 level 2 > volume #10 level 0.9486 > volume #10 level 1 > save session D:/Lab/Projects/ArfB/Chimera/Figure2_2.cxs includeMaps true opened ChimeraX session > graphics silhouettes true > volume #5 level 2.5 > lighting shadows false > volume #10 level 1.552 > volume #10 level 1.237 > volume #4 level 3 > volume #5 level 3 > volume #6 level 3 > volume #10 level 2 > volume #9 level 3 > volume #8 level 3 > lighting flat > lighting flat > lighting full > lighting full > lighting simple > lighting soft > lighting full > lighting flat > lighting full > volume #4 level 2.5 > volume #5 level 2.5 > volume #1 #5-10 surfaceSmoothing true subdivideSurface true squareMesh false > surface dust #5-10 size 5 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a.png" width 5284 height > 3000 supersample 4 > surface dust #5-10 size 7 > surface dust #6 size 7 > surface dust #5 size 7 > surface dust #4 size 7 > show #!1.1 models > hide #!4-6,8-10 target m > hide #!1.1 models > show #!3.1 models > volume #3.1 level 3.204 > volume #3.1 level 2.5 > volume #3.1 level 2 > volume #3.1 level 1.7 > volume #3.1 level 1 > volume #3.1 level 2.239 > volume #3.1 level 0.02 > volume #3.1 level 0.02 > volume #3.1 level 1.672 > volume #3.1 level 3 > hide #!3 models > volume #4 level 1 > volume #5 level 1 > show #!4 models > show #!5 models > volume #6 level 1 > volume #8 level 1 > volume #9 level 1 > volume #10 level 1 > view name 1 > volume #4 level 2 > volume #5 level 2 > volume #6 level 1.82 > volume #6 level 1.8 > volume #5 level 1.8 > volume #4 level 1.8 > volume #8 level 1.8 > volume #9 level 1.8 > volume #10 level 1.8 > volume #10 level 1.3 > volume #10 level 1.4 > volume #10 level 1.5 > volume #10 level 1.6 > volume #10 level 1.3 > volume #10 level 1.2 > lighting full > volume #4 color #39393900 > volume #4 color #39393901 > volume #4 color #3939390c > volume #4 color #39393978 > volume #4 color #3e3e3e78 > volume #4 color #3d3d3d78 > volume #4 color #41414178 > volume #4 color #43434378 > volume #4 color #53535378 > volume #4 color #55555578 > volume #4 color #58585878 > volume #4 color #5d5d5d78 > volume #4 color #5e5e5e78 > volume #4 color #5f5f5f78 > volume #4 color #63636378 > volume #4 color #64646478 > volume #4 color #67676778 > volume #4 color #68686878 > volume #4 color #6c6c6c78 > volume #4 color #6f6f6f78 > volume #4 color #71717178 > volume #4 color #74747478 > volume #4 color #76767678 > volume #4 color #79797978 > volume #4 color #7e7e7e78 > volume #4 color #7f7f7f78 > volume #4 color #82828278 > volume #4 color #83838378 > volume #4 color #84848478 > volume #4 color #83838378 > volume #4 color #81818178 > volume #4 color #7c7c7c78 > volume #4 color #7a7a7a78 > volume #4 color #75757578 > volume #4 color #74747478 > volume #4 color #73737378 > volume #4 color #71717178 > volume #4 color #70707078 > volume #4 color #6d6d6d78 > volume #4 color #6c6c6c78 > volume #4 color #6b6b6b78 > volume #4 color #6a6a6a78 > volume #4 color #6b6b6b78 > volume #4 color #6f6f6f78 > volume #4 color #70707078 > volume #4 color #71717178 > volume #4 color #73737378 > volume #5 color #c1c1c101 > volume #5 color #c1c1c10c > volume #5 color #c1c1c178 > volume #5 color #c1c1c10c > volume #5 color #c1c1c101 > volume #5 color #c1c1c112 > volume #5 color #c1c1c1b4 > volume #5 color #c1c1c150 > volume #5 color #c3c3c350 > volume #5 color #c2c2c250 > volume #5 color #bdbdbd50 > volume #5 color #bababa50 > volume #5 color #b9b9b950 > volume #5 color #b6b6b650 > volume #5 color #b4b4b450 > volume #5 color #b3b3b350 > volume #5 color #b8b8b850 > volume #5 color #b9b9b950 > volume #5 color #e6e6e650 > volume #5 color #e7e7e750 > volume #5 color #ffffff50 > volume #5 color #fefefe50 > volume #5 color #fafafa50 > volume #5 color #f8f8f850 > volume #5 color #f3f3f350 > volume #5 color #e8e8e850 > volume #5 color #e7e7e750 > volume #5 color #e3e3e350 > volume #5 color #e2e2e250 > volume #5 color #dddddd50 > volume #5 color #d5d5d550 > volume #5 color #d4d4d450 > volume #5 color #cecece50 > volume #5 color #cccccc50 > volume #5 color #cbcbcb50 > volume #5 color #c8c8c850 > volume #5 color #cacaca50 > volume #5 color #cbcbcb50 > volume #5 color #d0d0d050 > volume #5 color #d4d4d450 > volume #5 color #d4d4d401 > volume #5 color #d4d4d40c > volume #5 color #d4d4d478 > volume #5 color #d8d8d878 > volume #5 color #dadada78 > volume #5 color #dcdcdc78 > volume #5 color #e6e6e678 > volume #5 color #ececec78 > volume #5 color #efefef78 > volume #5 color #f0f0f078 > volume #5 color #f3f3f378 > volume #5 color #ebebeb78 > volume #5 color #e3e3e378 > volume #5 color #dfdfdf78 > volume #5 color #dddddd78 > view name 1 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a.png" width 4000 height > 4558 supersample 4 > volume #4 color #71717178 > volume #4 color #70707078 > volume #4 color #6d6d6d78 > volume #4 color #6c6c6c78 > volume #4 color #6b6b6b78 > volume #4 color #6a6a6a78 > volume #4 color #68686878 > volume #4 color #67676778 > volume #4 color #66666678 > volume #5 level 2.271 > volume #5 level 3 > volume #4 level 3 > volume #6 level 3 > volume #6 level 2 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a-thresholds-cheating.png" > width 4000 height 2627 supersample 4 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a-thresholds-cheating.png" > width 4000 height 2627 supersample 4 > volume #4 level 1.8 > volume #5 level 1.8 > view name 2 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a.png" width 4000 height > 2627 supersample 4 > hide #!4-6,8-10 target m > show #!3.2 models > hide #!3.2 models > hide #!3.1 models > show #!1.1 models > show #!1.2 models > ui mousemode rightMode select > select #1.1/y:95 8 atoms, 7 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > select down 157 atoms, 156 bonds, 1 model selected > select #1.1/A:2584 20 atoms, 21 bonds, 1 model selected > select up 62338 atoms, 69819 bonds, 1 model selected > select down 20 atoms, 21 bonds, 1 model selected > select #1.2/y:72 8 atoms, 7 bonds, 1 model selected > select up 44 atoms, 43 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > select down 44 atoms, 43 bonds, 1 model selected > toolshed show "Side View" > select #1.2/A:2483 20 atoms, 21 bonds, 1 model selected > cartoon style nucleic width 1.5 thickness 1.5 xsection oval > select clear > select #1.2/M:92 14 atoms, 15 bonds, 1 model selected > select up 92 atoms, 96 bonds, 2 models selected > select up 2148 atoms, 2186 bonds, 2 models selected > hide sel cartoons > hide sel cartoons > select #1.2/A:959 22 atoms, 24 bonds, 1 model selected Drag select of 1 residues > hide sel cartoons > select #1.2/A:955 20 atoms, 21 bonds, 1 model selected > hide sel cartoons > select #1.2/A:2456 20 atoms, 21 bonds, 1 model selected > hide sel cartoons > select #1.1/A:2465 20 atoms, 21 bonds, 1 model selected > hide sel cartoons > select #1.2/A:946 20 atoms, 21 bonds, 1 model selected > hide sel cartoons > select #1.2/A:945 22 atoms, 24 bonds, 1 model selected > hide sel cartoons > select #1.1/1-Z 91150 atoms, 99002 bonds, 391 pseudobonds, 2 models selected > select #1.1/0-Z 91595 atoms, 99452 bonds, 393 pseudobonds, 2 models selected > color sel white > select #1.2/0-Z 92146 atoms, 99982 bonds, 428 pseudobonds, 2 models selected > color sel dim gray > select clear > select #1.1/w:1 23 atoms, 25 bonds, 1 model selected > select #1.2/w:74 20 atoms, 21 bonds, 1 model selected > select up 1631 atoms, 1821 bonds, 1 model selected > color sel deep sky blue > select #1.1/w:73 22 atoms, 24 bonds, 1 model selected > select up 1631 atoms, 1822 bonds, 1 model selected > color sel cyan > color sel #afe6ff > lighting shadows false > select clear > lighting full > lighting full > lighting shadows false > select #1.1/w:74 20 atoms, 21 bonds, 1 model selected > select up 1631 atoms, 1822 bonds, 1 model selected > color sel #e7faff > color sel #afe6ff > select clear > select #1.1/w:1 23 atoms, 25 bonds, 1 model selected > select up 1631 atoms, 1822 bonds, 1 model selected > color sel #cdf9ff > select clear > select #1.2/y:19 5 atoms, 4 bonds, 1 model selected > select up 45 atoms, 44 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > color sel #eb0000 > select #1.1/y:87 5 atoms, 4 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > select clear > select #1.1/y:85 9 atoms, 8 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > color sel #ebd0cb > select clear > select #1.1/v:18 9 atoms, 8 bonds, 1 model selected > select up 242 atoms, 256 bonds, 2 models selected > hide sel cartoons > show sel atoms > style sel sphere Changed 242 atom styles > color sel orange > color sel orange > color sel #ff5500 > select #1.1/v:17@NH2 1 atom, 1 model selected > select up 11 atoms, 10 bonds, 1 model selected > select up 121 atoms, 128 bonds, 1 model selected > color sel #ffdd8c > color sel #ffae50 > select clear > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S.png" width 4000 > height 3047 supersample 4 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S.png" width 4000 > height 3047 supersample 4 > save session "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S.cxs" includeMaps > true opened ChimeraX session > ui mousemode rightMode select > select #1.1/A:2274 22 atoms, 24 bonds, 1 model selected > hide sel cartoons > select #1.1/W:7 11 atoms, 10 bonds, 1 model selected > hide sel cartoons > volume #10 color #e2effa > volume #10 color #cccccc > volume #10 color #f0f0f0 > volume #10 color white > volume #10 color #dbdbdb > volume #10 color white > volume #10 color #fdfdfd > volume #10 color #f6f6f6 > volume #10 color #efefef > volume #10 color #e1e1e1 > volume #10 color gainsboro > volume #10 color white > volume #10 color #f0f0f0 > volume #10 color #ffc8c8 > volume #10 color #efefef > volume #10 color #f90000 > volume #10 color red > volume #10 color #fd1919 > volume #10 color #f4a9a9 > volume #10 color #d89595 > volume #10 color #db9797 > volume #10 color #e49e9e > volume #10 color #eaa2a2 > volume #10 color #f0a6a6 > volume #10 color #f7abab > volume #10 color #feb2b2 > volume #10 color #faadad > volume #10 color #9d6d6d > volume #10 color #e78989 > volume #10 color #e29c9c > volume #10 color #f3a7a7 > volume #10 color #feafaf > volume #10 color #ffb3b3 > volume #10 color #ffb8b8 > volume #10 color #ffbcbc > volume #10 color #ffbfbf > volume #10 color #ffc1c1 > volume #10 color #ffc2c2 > volume #10 color #ffc8c8 > select #1.1/y:92 7 atoms, 6 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > color sel #ffc8c8 > lighting shadows true > lighting shadows false > lighting soft > lighting simple > lighting full > lighting shadows false > select clear > select #1.1/y:85 9 atoms, 8 bonds, 1 model selected > select up 157 atoms, 156 bonds, 1 model selected > select up 1078 atoms, 1090 bonds, 1 model selected > volume #10 color #0065b6 > volume #10 color #bfbfbf > volume #10 color #f0f0f0 > volume #10 color #dadada > volume #10 color #b9b9b9 > volume #10 color #dadada > volume #10 color #f2f2f2 > volume #10 color #e80000 > volume #10 color #040000 > volume #10 color #d79494 > volume #10 color #e59e9e > volume #10 color #feb2b2 > volume #10 color #ffbbbb > volume #10 color #ffd7d7 > volume #10 color #e8a6a6 > volume #10 color #a5a4a4 > volume #10 color white > volume #10 color #f0a6a6 > volume #10 color #fcaeae > volume #10 color #f7abab > volume #10 color #faacac > volume #10 color #f7abab > volume #10 color #f2a7a7 > volume #10 color #f5a9a9 > volume #10 color #efa5a5 > volume #10 color #f2a7a7 > volume #10 color #f5a9a9 > volume #10 color #f7abab > color sel #f7abab > select clear Unknown command: silhouettes Unknown command: silhouette > graphics silhouettes false > graphics silhouettes true > graphics silhouettes true width 2 > graphics silhouettes true width 1.5 > graphics silhouettes true width 1.2 > select clear > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a 16S_1.png" width 4000 > height 3238 supersample 4 > graphics silhouettes true width 2 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S_2.png" width 4000 > height 3238 supersample 4 > toolshed show "Side View" > lighting depthCueStart 0.75 > save image "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S_2.png" width 4000 > height 3238 supersample 4 > save session "D:/Lab/Projects/ArfB/Chimera/Figure 2a 23S_2.cxs" includeMaps > true opened ChimeraX session > toolshed show "Side View" > view list Named views: 1, 2 > view name 3 > view 1 > view 2 > view list Named views: 1, 2, 3 > view 3 > cartoon style helix width 3 thickness 0.8 > cartoon style strand width 3 thickness 0.8 > cartoon style coil width 0.8 thickness 0.8 > cartoon style nucleic width 1.5 thickness 1.5 xsection oval Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. > save2 "X:/Work/Projects/ArfB-1/Chimera/Figure 2a 23S_3.png" width 3000 > height 834 supersample 3 Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\tool.py", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\toolshed\info.py", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1633, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\\__init__.py", line 38, in run_provider providers.run_provider(session, name) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\providers.py", line 45, in run_provider what(session) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\providers.py", line 27, in _file_save show_save_file_dialog(session) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\dialog.py", line 101, in show_save_file_dialog _dlg.display(session, session.ui.main_window) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\dialog.py", line 31, in display run(session, cmd) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2848, in run result = ci.function(session, **kw_args) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\cmd.py", line 60, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2848, in run result = ci.function(session, **kw_args) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\cmd.py", line 73, in provider_save mgr).save(session, path, **provider_kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\PIL\Image.py", line 2091, in save save_handler = SAVE[format.upper()] KeyError: 'PNG IMAGE' KeyError: 'PNG IMAGE' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\PIL\Image.py", line 2091, in save save_handler = SAVE[format.upper()] See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' AttributeError: 'SaveOptionsWidget' object has no attribute '_sizes' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\gui.py", line 96, in _width_changed w,h,iw,ih = self._sizes() See log for complete Python traceback. > save C:\Users\Valentyn\Desktop\image1.png supersample 3 > save2 "X:/Work/Projects/ArfB-1/Chimera/Figure 2a 23S_3.cxs" includeMaps true > save2 "X:/Work/Projects/ArfB-1/Chimera/Figure 2a 23S_3.png" width 4000 > height 3000 supersample 4 Traceback (most recent call last): File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\tool.py", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\toolshed\info.py", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py", line 1633, in run_provider return cls._get_func(api, "run_provider")(session, name, mgr, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\\__init__.py", line 38, in run_provider providers.run_provider(session, name) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\providers.py", line 45, in run_provider what(session) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\toolbar\providers.py", line 27, in _file_save show_save_file_dialog(session) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\dialog.py", line 101, in show_save_file_dialog _dlg.display(session, session.ui.main_window) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\dialog.py", line 31, in display run(session, cmd) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2848, in run result = ci.function(session, **kw_args) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\cmd.py", line 60, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2848, in run result = ci.function(session, **kw_args) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\save_command\cmd.py", line 73, in provider_save mgr).save(session, path, **provider_kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\\__init__.py", line 24, in save save_image(session, path, format_name, **kw) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\chimerax\image_formats\save.py", line 115, in save_image i.save(path, format_name, **metadata) File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\PIL\Image.py", line 2091, in save save_handler = SAVE[format.upper()] KeyError: 'PNG IMAGE' KeyError: 'PNG IMAGE' File "X:\Soft\ChimeraX\ChimeraX-02-04-2020\bin\lib\site- packages\PIL\Image.py", line 2091, in save save_handler = SAVE[format.upper()] See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 445.75 OpenGL renderer: GeForce GTX 1070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Micro-Star International Co., Ltd. Model: GE73VR 7RF OS: Майкрософт Windows 10 Pro (Build 18363) Memory: 17,059,950,592 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz"
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Save dialog → PNG image → several errors |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Fix(es) available in next build.
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Hi Valentyn,
save "X:/Work/Projects/ArfB-1/Chimera/Figure 2a 23S_3.png" width 4000 height 3000 supersample 4
Probably easiest to copy the failed 'save2' command from the log and paste it into the command line (and remove the '2'). Copying from the log is a little tricky: highlight the text and the right-click on the highlighted text and choose "Copy" from the popup menu.
--Eric