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Opened 6 years ago
Closed 3 years ago
#2992 closed defect (fixed)
ISOLDE referencing a Structure that's been deleted
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.3.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-12-23)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 0.91 (2019-12-23)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/km503/Documents/VRC40/higher resolution/ISOLDE/2.cif"
Summary of feedback from opening /Users/km503/Documents/VRC40/higher
resolution/ISOLDE/2.cif
---
warnings | Unknown polymer entity '1' near line 156
Unable to infer polymer connectivity due to unspecified label_seq_id for
residue "NAG" near line 7219
Unknown polymer entity '2' near line 8204
Unknown polymer entity '3' near line 10606
Unknown polymer entity '4' near line 14072
Atom HB1 is not in the residue template for GLU #33 in chain A
Atom HB1 is not in the residue template for ASN #34 in chain A
Atom HB1 is not in the residue template for LEU #35 in chain A
Atom HB1 is not in the residue template for TRP #36 in chain A
Atom HB1 is not in the residue template for TYR #40 in chain A
1 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #42 in chain A
Atom HB1 is not in the residue template for PRO #44 in chain A
Atom HB1 is not in the residue template for TRP #46 in chain A
Atom HB1 is not in the residue template for LYS #47 in chain A
Atom HB1 is not in the residue template for ASP #48 in chain A
Atom HB1 is not in the residue template for GLU #50 in chain A
22 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #85 in chain A
Atom HB1 is not in the residue template for HIS #86 in chain A
Atom HB1 is not in the residue template for LEU #87 in chain A
Atom HB1 is not in the residue template for GLU #88 in chain A
Atom HB1 is not in the residue template for ASN #89 in chain A
Atom HB1 is not in the residue template for GLU #92 in chain A
14 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #109 in chain A
Atom HG11 is not in the residue template for ILE #110 in chain A
Atom HB1 is not in the residue template for SER #111 in chain A
Atom HB1 is not in the residue template for LEU #112 in chain A
Atom HB1 is not in the residue template for TRP #113 in chain A
Atom HB1 is not in the residue template for ASP #114 in chain A
Atom HB1 is not in the residue template for GLN #115 in chain A
16 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #144 in chain A
Atom HB1 is not in the residue template for ARG #152 in chain A
Atom HA1 is not in the residue template for GLY #153 in chain A
Atom HB1 is not in the residue template for GLU #154 in chain A
Atom HB1 is not in the residue template for LEU #155 in chain A
Atom HB1 is not in the residue template for LYS #156 in chain A
Atom HB1 is not in the residue template for ASN #157 in chain A
Atom HB1 is not in the residue template for CYS #158 in chain A
21 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #186 in chain A
Atom HB1 is not in the residue template for ASN #187 in chain A
Atom HB1 is not in the residue template for SER #188 in chain A
Atom HB1 is not in the residue template for ASN #189 in chain A
Atom HB1 is not in the residue template for LYS #190 in chain A
Atom HB1 is not in the residue template for GLU #191 in chain A
3 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #195 in chain A
Atom HB1 is not in the residue template for ASN #196 in chain A
Atom HB1 is not in the residue template for CYS #197 in chain A
Atom HB1 is not in the residue template for ASN #198 in chain A
Atom HB1 is not in the residue template for SER #200 in chain A
Atom HB1 is not in the residue template for CYS #202 in chain A
8 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #214 in chain A
Atom HB1 is not in the residue template for PRO #215 in chain A
Atom HG11 is not in the residue template for ILE #216 in chain A
Atom HB1 is not in the residue template for HIS #217 in chain A
Atom HB1 is not in the residue template for TYR #218 in chain A
Atom HB1 is not in the residue template for CYS #219 in chain A
Atom HB1 is not in the residue template for PRO #221 in chain A
Atom HA1 is not in the residue template for GLY #223 in chain A
Atom HB1 is not in the residue template for PHE #224 in chain A
Atom HG11 is not in the residue template for ILE #226 in chain A
Atom HB1 is not in the residue template for LEU #227 in chain A
Atom HB1 is not in the residue template for LYS #228 in chain A
Atom HB1 is not in the residue template for CYS #229 in chain A
Atom HB1 is not in the residue template for LYS #230 in chain A
Atom HB1 is not in the residue template for ASP #231 in chain A
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #236 in chain A
Atom HA1 is not in the residue template for GLY #238 in chain A
Atom HB1 is not in the residue template for PRO #239 in chain A
Atom HB1 is not in the residue template for CYS #240 in chain A
Atom HB1 is not in the residue template for PRO #241 in chain A
Atom HB1 is not in the residue template for SER #242 in chain A
Atom HB1 is not in the residue template for SER #244 in chain A
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #251 in chain A
Atom HG11 is not in the residue template for ILE #252 in chain A
Atom HB1 is not in the residue template for LYS #253 in chain A
Atom HB1 is not in the residue template for PRO #254 in chain A
Atom HB1 is not in the residue template for SER #257 in chain A
Atom HB1 is not in the residue template for GLN #259 in chain A
Atom HB1 is not in the residue template for LEU #260 in chain A
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #264 in chain A
Atom HB1 is not in the residue template for SER #265 in chain A
Atom HB1 is not in the residue template for LEU #266 in chain A
Atom HB1 is not in the residue template for GLU #268 in chain A
Atom HB1 is not in the residue template for GLU #269 in chain A
Atom HB1 is not in the residue template for GLU #270 in chain A
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #273 in chain A
Atom HB1 is not in the residue template for ARG #274 in chain A
Atom HB1 is not in the residue template for SER #275 in chain A
Atom HB1 is not in the residue template for GLU #276 in chain A
Atom HB1 is not in the residue template for ASN #277 in chain A
Atom HG11 is not in the residue template for ILE #278 in chain A
Atom HB1 is not in the residue template for ASN #280 in chain A
Atom HB1 is not in the residue template for ASN #281 in chain A
Atom HB1 is not in the residue template for LYS #283 in chain A
Atom HB1 is not in the residue template for ASN #284 in chain A
Atom HG11 is not in the residue template for ILE #285 in chain A
Atom HB1 is not in the residue template for LEU #286 in chain A
Atom HB1 is not in the residue template for GLN #288 in chain A
Atom HB1 is not in the residue template for PHE #289 in chain A
Atom HB1 is not in the residue template for ASN #290 in chain A
Atom HB1 is not in the residue template for PRO #292 in chain A
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #295 in chain A
Atom HB1 is not in the residue template for ASN #296 in chain A
Atom HB1 is not in the residue template for CYS #297 in chain A
Atom HB1 is not in the residue template for ARG #299 in chain A
Atom HB1 is not in the residue template for PRO #300 in chain A
Atom HB1 is not in the residue template for ASN #301 in chain A
5 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #308 in chain A
Atom HB1 is not in the residue template for ARG #309 in chain A
Atom HG11 is not in the residue template for ILE #312 in chain A
Atom HA1 is not in the residue template for GLY #313 in chain A
Atom HB1 is not in the residue template for PRO #314 in chain A
Atom HA1 is not in the residue template for GLY #315 in chain A
Atom HB1 is not in the residue template for GLN #316 in chain A
Atom HB1 is not in the residue template for PHE #318 in chain A
Atom HB1 is not in the residue template for TYR #319 in chain A
Atom HA1 is not in the residue template for GLY #322 in chain A
Atom HB1 is not in the residue template for ASP #322A in chain A
Atom HG11 is not in the residue template for ILE #323 in chain A
Atom HG11 is not in the residue template for ILE #323A in chain A
Atom HA1 is not in the residue template for GLY #324 in chain A
Atom HB1 is not in the residue template for ASP #325 in chain A
Atom HG11 is not in the residue template for ILE #326 in chain A
Atom HB1 is not in the residue template for ARG #327 in chain A
Atom HB1 is not in the residue template for GLN #328 in chain A
Atom HB1 is not in the residue template for HIS #330 in chain A
Atom HB1 is not in the residue template for CYS #331 in chain A
Atom HB1 is not in the residue template for ASN #332 in chain A
6 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #343 in chain A
Atom HB1 is not in the residue template for LYS #344 in chain A
Atom HB1 is not in the residue template for LYS #347 in chain A
Atom HB1 is not in the residue template for GLN #348 in chain A
Atom HB1 is not in the residue template for LEU #349 in chain A
Atom HB1 is not in the residue template for ARG #350 in chain A
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #354 in chain A
Atom HB1 is not in the residue template for ASN #355 in chain A
Atom HB1 is not in the residue template for ASN #356 in chain A
Atom HG11 is not in the residue template for ILE #358 in chain A
Atom HG11 is not in the residue template for ILE #359 in chain A
Atom HB1 is not in the residue template for ARG #360 in chain A
Atom HB1 is not in the residue template for PHE #361 in chain A
Atom HB1 is not in the residue template for ASN #363 in chain A
Atom HB1 is not in the residue template for SER #364 in chain A
Atom HB1 is not in the residue template for SER #365 in chain A
Atom HA1 is not in the residue template for GLY #366 in chain A
Atom HA1 is not in the residue template for GLY #367 in chain A
Atom HB1 is not in the residue template for ASP #368 in chain A
Atom HB1 is not in the residue template for LEU #369 in chain A
Atom HB1 is not in the residue template for GLU #370 in chain A
Atom HB1 is not in the residue template for HIS #374 in chain A
Atom HB1 is not in the residue template for SER #375 in chain A
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #379 in chain A
Atom HA1 is not in the residue template for GLY #380 in chain A
Atom HB1 is not in the residue template for GLU #381 in chain A
Atom HB1 is not in the residue template for PHE #382 in chain A
Atom HB1 is not in the residue template for PHE #383 in chain A
Atom HB1 is not in the residue template for TYR #384 in chain A
Atom HB1 is not in the residue template for CYS #385 in chain A
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #389 in chain A
Atom HB1 is not in the residue template for LEU #390 in chain A
Atom HB1 is not in the residue template for PHE #391 in chain A
Atom HB1 is not in the residue template for ASN #392 in chain A
Atom HB1 is not in the residue template for SER #393 in chain A
Atom HB1 is not in the residue template for TRP #395 in chain A
Atom HG11 is not in the residue template for ILE #396 in chain A
Atom HB1 is not in the residue template for SER #405 in chain A
Atom HB1 is not in the residue template for ASN #406 in chain A
Atom HB1 is not in the residue template for ASN #407 in chain A
Atom HB1 is not in the residue template for ASP #412 in chain A
Atom HB1 is not in the residue template for SER #413 in chain A
Atom HG11 is not in the residue template for ILE #414 in chain A
Atom HB1 is not in the residue template for LEU #416 in chain A
Atom HB1 is not in the residue template for PRO #417 in chain A
Atom HB1 is not in the residue template for CYS #418 in chain A
Atom HB1 is not in the residue template for ARG #419 in chain A
Atom HG11 is not in the residue template for ILE #420 in chain A
Atom HB1 is not in the residue template for LYS #421 in chain A
Atom HB1 is not in the residue template for GLN #422 in chain A
Atom HG11 is not in the residue template for ILE #423 in chain A
Atom HG11 is not in the residue template for ILE #424 in chain A
Atom HB1 is not in the residue template for ASN #425 in chain A
Atom HB1 is not in the residue template for MET #426 in chain A
Atom HB1 is not in the residue template for TRP #427 in chain A
Atom HB1 is not in the residue template for GLN #428 in chain A
Atom HB1 is not in the residue template for ARG #429 in chain A
Atom HG11 is not in the residue template for ILE #430 in chain A
Atom HA1 is not in the residue template for GLY #431 in chain A
Atom HB1 is not in the residue template for GLN #432 in chain A
Atom HB1 is not in the residue template for CYS #433 in chain A
Atom HB1 is not in the residue template for MET #434 in chain A
Atom HB1 is not in the residue template for TYR #435 in chain A
Atom HB1 is not in the residue template for PRO #437 in chain A
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #439 in chain A
Atom HB1 is not in the residue template for GLN #440 in chain A
Atom HA1 is not in the residue template for GLY #441 in chain A
Atom HG11 is not in the residue template for ILE #443 in chain A
Atom HB1 is not in the residue template for ARG #444 in chain A
Atom HB1 is not in the residue template for CYS #445 in chain A
Atom HB1 is not in the residue template for SER #447 in chain A
Atom HB1 is not in the residue template for ASN #448 in chain A
Atom HG11 is not in the residue template for ILE #449 in chain A
Atom HA1 is not in the residue template for GLY #451 in chain A
Atom HB1 is not in the residue template for LEU #452 in chain A
Atom HG11 is not in the residue template for ILE #453 in chain A
Atom HB1 is not in the residue template for LEU #454 in chain A
Atom HB1 is not in the residue template for ARG #456 in chain A
Atom HB1 is not in the residue template for ASP #457 in chain A
Atom HA1 is not in the residue template for GLY #458 in chain A
Atom HA1 is not in the residue template for GLY #459 in chain A
Atom HB1 is not in the residue template for SER #460 in chain A
Atom HB1 is not in the residue template for ASN #462 in chain A
Atom HB1 is not in the residue template for SER #463 in chain A
Atom HB1 is not in the residue template for GLU #466 in chain A
Atom HB1 is not in the residue template for PHE #468 in chain A
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #471 in chain A
Atom HA1 is not in the residue template for GLY #472 in chain A
Atom HA1 is not in the residue template for GLY #473 in chain A
Atom HB1 is not in the residue template for ASP #474 in chain A
Atom HB1 is not in the residue template for MET #475 in chain A
Atom HB1 is not in the residue template for ARG #476 in chain A
Atom HB1 is not in the residue template for ASP #477 in chain A
Atom HB1 is not in the residue template for ASN #478 in chain A
10 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #491 in chain A
Atom HB1 is not in the residue template for GLU #492 in chain A
Atom HB1 is not in the residue template for PRO #493 in chain A
Atom HB1 is not in the residue template for LEU #494 in chain A
Atom HA1 is not in the residue template for GLY #495 in chain A
Atom HB1 is not in the residue template for PRO #498 in chain A
Atom HB1 is not in the residue template for ARG #500 in chain A
Atom HB1 is not in the residue template for CYS #501 in chain A
Atom HB1 is not in the residue template for LYS #502 in chain A
Atom HB1 is not in the residue template for ARG #503 in chain A
1 messages similar to the above omitted
Atom HN is not in the residue template for NAG #3932 in chain A
Atom H11 is not in the residue template for NAG #3943 in chain A
Atom HN is not in the residue template for NAG #3944 in chain A
Atom H11 is not in the residue template for NAG #3961 in chain A
Atom H11 is not in the residue template for NAG #3964 in chain A
Atom H11 is not in the residue template for MAN #3969 in chain A
Atom HA1 is not in the residue template for GLY #514 in chain B
Atom HG11 is not in the residue template for ILE #515 in chain B
Atom HA1 is not in the residue template for GLY #516 in chain B
Atom HB1 is not in the residue template for PHE #519 in chain B
Atom HB1 is not in the residue template for LEU #520 in chain B
Atom HA1 is not in the residue template for GLY #521 in chain B
Atom HB1 is not in the residue template for PHE #522 in chain B
Atom HB1 is not in the residue template for LEU #523 in chain B
Atom HA1 is not in the residue template for GLY #524 in chain B
Atom HA1 is not in the residue template for GLY #527 in chain B
Atom HB1 is not in the residue template for SER #528 in chain B
Atom HB1 is not in the residue template for MET #530 in chain B
Atom HA1 is not in the residue template for GLY #531 in chain B
Atom HB1 is not in the residue template for SER #534 in chain B
Atom HB1 is not in the residue template for MET #535 in chain B
Atom HB1 is not in the residue template for LEU #537 in chain B
Atom HB1 is not in the residue template for GLN #540 in chain B
Atom HB1 is not in the residue template for ARG #542 in chain B
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #547 in chain B
Atom HG11 is not in the residue template for ILE #548 in chain B
Atom HB1 is not in the residue template for GLN #550 in chain B
Atom HB1 is not in the residue template for GLN #551 in chain B
Atom HB1 is not in the residue template for GLN #552 in chain B
Atom HB1 is not in the residue template for SER #553 in chain B
Atom HB1 is not in the residue template for ASN #554 in chain B
13 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #572 in chain B
Atom HG11 is not in the residue template for ILE #573 in chain B
Atom HB1 is not in the residue template for LYS #574 in chain B
Atom HB1 is not in the residue template for GLN #575 in chain B
Atom HB1 is not in the residue template for LEU #576 in chain B
Atom HB1 is not in the residue template for GLN #577 in chain B
Atom HB1 is not in the residue template for ARG #579 in chain B
11 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #594 in chain B
Atom HG11 is not in the residue template for ILE #595 in chain B
Atom HB1 is not in the residue template for TRP #596 in chain B
Atom HA1 is not in the residue template for GLY #597 in chain B
Atom HB1 is not in the residue template for CYS #598 in chain B
Atom HB1 is not in the residue template for SER #599 in chain B
Atom HA1 is not in the residue template for GLY #600 in chain B
Atom HB1 is not in the residue template for LYS #601 in chain B
Atom HB1 is not in the residue template for LEU #602 in chain B
Atom HG11 is not in the residue template for ILE #603 in chain B
Atom HB1 is not in the residue template for CYS #604 in chain B
Atom HB1 is not in the residue template for CYS #605 in chain B
Atom HB1 is not in the residue template for ASN #607 in chain B
Atom HB1 is not in the residue template for PRO #609 in chain B
Atom HB1 is not in the residue template for TRP #610 in chain B
11 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #622 in chain B
Atom HB1 is not in the residue template for TRP #623 in chain B
Atom HB1 is not in the residue template for ASP #624 in chain B
Atom HB1 is not in the residue template for ASN #625 in chain B
Atom HB1 is not in the residue template for MET #626 in chain B
Atom HB1 is not in the residue template for TRP #628 in chain B
6 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #635 in chain B
Atom HB1 is not in the residue template for SER #636 in chain B
Atom HB1 is not in the residue template for ASN #637 in chain B
Atom HB1 is not in the residue template for TYR #638 in chain B
Atom HB1 is not in the residue template for GLN #640 in chain B
Atom HG11 is not in the residue template for ILE #641 in chain B
Atom HG11 is not in the residue template for ILE #642 in chain B
Atom HB1 is not in the residue template for TYR #643 in chain B
Atom HA1 is not in the residue template for GLY #644 in chain B
Atom HB1 is not in the residue template for LEU #645 in chain B
Atom HB1 is not in the residue template for LEU #646 in chain B
Atom HB1 is not in the residue template for GLU #647 in chain B
Atom HB1 is not in the residue template for GLU #648 in chain B
Atom HB1 is not in the residue template for SER #649 in chain B
14 messages similar to the above omitted
Atom H1 is not in the residue template for GLN #1 in chain C
Atom H1 is not in the residue template for GLN #1 in chain D
Atom HB1 is not in the residue template for GLU #33 in chain E
Atom HB1 is not in the residue template for ASN #34 in chain E
Atom HB1 is not in the residue template for LEU #35 in chain E
Atom HB1 is not in the residue template for TRP #36 in chain E
Atom HB1 is not in the residue template for TYR #40 in chain E
1 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #42 in chain E
Atom HB1 is not in the residue template for PRO #44 in chain E
Atom HB1 is not in the residue template for TRP #46 in chain E
Atom HB1 is not in the residue template for LYS #47 in chain E
Atom HB1 is not in the residue template for ASP #48 in chain E
Atom HB1 is not in the residue template for GLU #50 in chain E
22 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #85 in chain E
Atom HB1 is not in the residue template for HIS #86 in chain E
Atom HB1 is not in the residue template for LEU #87 in chain E
Atom HB1 is not in the residue template for GLU #88 in chain E
Atom HB1 is not in the residue template for ASN #89 in chain E
Atom HB1 is not in the residue template for GLU #92 in chain E
14 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #109 in chain E
Atom HG11 is not in the residue template for ILE #110 in chain E
Atom HB1 is not in the residue template for SER #111 in chain E
Atom HB1 is not in the residue template for LEU #112 in chain E
Atom HB1 is not in the residue template for TRP #113 in chain E
Atom HB1 is not in the residue template for ASP #114 in chain E
Atom HB1 is not in the residue template for GLN #115 in chain E
16 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #144 in chain E
Atom HB1 is not in the residue template for ARG #152 in chain E
Atom HA1 is not in the residue template for GLY #153 in chain E
Atom HB1 is not in the residue template for GLU #154 in chain E
Atom HB1 is not in the residue template for LEU #155 in chain E
Atom HB1 is not in the residue template for LYS #156 in chain E
Atom HB1 is not in the residue template for ASN #157 in chain E
Atom HB1 is not in the residue template for CYS #158 in chain E
21 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #186 in chain E
Atom HB1 is not in the residue template for ASN #187 in chain E
Atom HB1 is not in the residue template for SER #188 in chain E
Atom HB1 is not in the residue template for ASN #189 in chain E
Atom HB1 is not in the residue template for LYS #190 in chain E
Atom HB1 is not in the residue template for GLU #191 in chain E
3 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #195 in chain E
Atom HB1 is not in the residue template for ASN #196 in chain E
Atom HB1 is not in the residue template for CYS #197 in chain E
Atom HB1 is not in the residue template for ASN #198 in chain E
Atom HB1 is not in the residue template for SER #200 in chain E
Atom HB1 is not in the residue template for CYS #202 in chain E
8 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #214 in chain E
Atom HB1 is not in the residue template for PRO #215 in chain E
Atom HG11 is not in the residue template for ILE #216 in chain E
Atom HB1 is not in the residue template for HIS #217 in chain E
Atom HB1 is not in the residue template for TYR #218 in chain E
Atom HB1 is not in the residue template for CYS #219 in chain E
Atom HB1 is not in the residue template for PRO #221 in chain E
Atom HA1 is not in the residue template for GLY #223 in chain E
Atom HB1 is not in the residue template for PHE #224 in chain E
Atom HG11 is not in the residue template for ILE #226 in chain E
Atom HB1 is not in the residue template for LEU #227 in chain E
Atom HB1 is not in the residue template for LYS #228 in chain E
Atom HB1 is not in the residue template for CYS #229 in chain E
Atom HB1 is not in the residue template for LYS #230 in chain E
Atom HB1 is not in the residue template for ASP #231 in chain E
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #236 in chain E
Atom HA1 is not in the residue template for GLY #238 in chain E
Atom HB1 is not in the residue template for PRO #239 in chain E
Atom HB1 is not in the residue template for CYS #240 in chain E
Atom HB1 is not in the residue template for PRO #241 in chain E
Atom HB1 is not in the residue template for SER #242 in chain E
Atom HB1 is not in the residue template for SER #244 in chain E
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #251 in chain E
Atom HG11 is not in the residue template for ILE #252 in chain E
Atom HB1 is not in the residue template for LYS #253 in chain E
Atom HB1 is not in the residue template for PRO #254 in chain E
Atom HB1 is not in the residue template for SER #257 in chain E
Atom HB1 is not in the residue template for GLN #259 in chain E
Atom HB1 is not in the residue template for LEU #260 in chain E
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #264 in chain E
Atom HB1 is not in the residue template for SER #265 in chain E
Atom HB1 is not in the residue template for LEU #266 in chain E
Atom HB1 is not in the residue template for GLU #268 in chain E
Atom HB1 is not in the residue template for GLU #269 in chain E
Atom HB1 is not in the residue template for GLU #270 in chain E
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #273 in chain E
Atom HB1 is not in the residue template for ARG #274 in chain E
Atom HB1 is not in the residue template for SER #275 in chain E
Atom HB1 is not in the residue template for GLU #276 in chain E
Atom HB1 is not in the residue template for ASN #277 in chain E
Atom HG11 is not in the residue template for ILE #278 in chain E
Atom HB1 is not in the residue template for ASN #280 in chain E
Atom HB1 is not in the residue template for ASN #281 in chain E
Atom HB1 is not in the residue template for LYS #283 in chain E
Atom HB1 is not in the residue template for ASN #284 in chain E
Atom HG11 is not in the residue template for ILE #285 in chain E
Atom HB1 is not in the residue template for LEU #286 in chain E
Atom HB1 is not in the residue template for GLN #288 in chain E
Atom HB1 is not in the residue template for PHE #289 in chain E
Atom HB1 is not in the residue template for ASN #290 in chain E
Atom HB1 is not in the residue template for PRO #292 in chain E
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #295 in chain E
Atom HB1 is not in the residue template for ASN #296 in chain E
Atom HB1 is not in the residue template for CYS #297 in chain E
Atom HB1 is not in the residue template for ARG #299 in chain E
Atom HB1 is not in the residue template for PRO #300 in chain E
Atom HB1 is not in the residue template for ASN #301 in chain E
5 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #308 in chain E
Atom HB1 is not in the residue template for ARG #309 in chain E
Atom HG11 is not in the residue template for ILE #312 in chain E
Atom HA1 is not in the residue template for GLY #313 in chain E
Atom HB1 is not in the residue template for PRO #314 in chain E
Atom HA1 is not in the residue template for GLY #315 in chain E
Atom HB1 is not in the residue template for GLN #316 in chain E
Atom HB1 is not in the residue template for PHE #318 in chain E
Atom HB1 is not in the residue template for TYR #319 in chain E
Atom HA1 is not in the residue template for GLY #322 in chain E
Atom HB1 is not in the residue template for ASP #322A in chain E
Atom HG11 is not in the residue template for ILE #323 in chain E
Atom HG11 is not in the residue template for ILE #323A in chain E
Atom HA1 is not in the residue template for GLY #324 in chain E
Atom HB1 is not in the residue template for ASP #325 in chain E
Atom HG11 is not in the residue template for ILE #326 in chain E
Atom HB1 is not in the residue template for ARG #327 in chain E
Atom HB1 is not in the residue template for GLN #328 in chain E
Atom HB1 is not in the residue template for HIS #330 in chain E
Atom HB1 is not in the residue template for CYS #331 in chain E
Atom HB1 is not in the residue template for ASN #332 in chain E
6 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #343 in chain E
Atom HB1 is not in the residue template for LYS #344 in chain E
Atom HB1 is not in the residue template for LYS #347 in chain E
Atom HB1 is not in the residue template for GLN #348 in chain E
Atom HB1 is not in the residue template for LEU #349 in chain E
Atom HB1 is not in the residue template for ARG #350 in chain E
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #354 in chain E
Atom HB1 is not in the residue template for ASN #355 in chain E
Atom HB1 is not in the residue template for ASN #356 in chain E
Atom HG11 is not in the residue template for ILE #358 in chain E
Atom HG11 is not in the residue template for ILE #359 in chain E
Atom HB1 is not in the residue template for ARG #360 in chain E
Atom HB1 is not in the residue template for PHE #361 in chain E
Atom HB1 is not in the residue template for ASN #363 in chain E
Atom HB1 is not in the residue template for SER #364 in chain E
Atom HB1 is not in the residue template for SER #365 in chain E
Atom HA1 is not in the residue template for GLY #366 in chain E
Atom HA1 is not in the residue template for GLY #367 in chain E
Atom HB1 is not in the residue template for ASP #368 in chain E
Atom HB1 is not in the residue template for LEU #369 in chain E
Atom HB1 is not in the residue template for GLU #370 in chain E
Atom HB1 is not in the residue template for HIS #374 in chain E
Atom HB1 is not in the residue template for SER #375 in chain E
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #379 in chain E
Atom HA1 is not in the residue template for GLY #380 in chain E
Atom HB1 is not in the residue template for GLU #381 in chain E
Atom HB1 is not in the residue template for PHE #382 in chain E
Atom HB1 is not in the residue template for PHE #383 in chain E
Atom HB1 is not in the residue template for TYR #384 in chain E
Atom HB1 is not in the residue template for CYS #385 in chain E
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #389 in chain E
Atom HB1 is not in the residue template for LEU #390 in chain E
Atom HB1 is not in the residue template for PHE #391 in chain E
Atom HB1 is not in the residue template for ASN #392 in chain E
Atom HB1 is not in the residue template for SER #393 in chain E
Atom HB1 is not in the residue template for TRP #395 in chain E
Atom HG11 is not in the residue template for ILE #396 in chain E
Atom HB1 is not in the residue template for SER #405 in chain E
Atom HB1 is not in the residue template for ASN #406 in chain E
Atom HB1 is not in the residue template for ASN #407 in chain E
Atom HB1 is not in the residue template for ASP #412 in chain E
Atom HB1 is not in the residue template for SER #413 in chain E
Atom HG11 is not in the residue template for ILE #414 in chain E
Atom HB1 is not in the residue template for LEU #416 in chain E
Atom HB1 is not in the residue template for PRO #417 in chain E
Atom HB1 is not in the residue template for CYS #418 in chain E
Atom HB1 is not in the residue template for ARG #419 in chain E
Atom HG11 is not in the residue template for ILE #420 in chain E
Atom HB1 is not in the residue template for LYS #421 in chain E
Atom HB1 is not in the residue template for GLN #422 in chain E
Atom HG11 is not in the residue template for ILE #423 in chain E
Atom HG11 is not in the residue template for ILE #424 in chain E
Atom HB1 is not in the residue template for ASN #425 in chain E
Atom HB1 is not in the residue template for MET #426 in chain E
Atom HB1 is not in the residue template for TRP #427 in chain E
Atom HB1 is not in the residue template for GLN #428 in chain E
Atom HB1 is not in the residue template for ARG #429 in chain E
Atom HG11 is not in the residue template for ILE #430 in chain E
Atom HA1 is not in the residue template for GLY #431 in chain E
Atom HB1 is not in the residue template for GLN #432 in chain E
Atom HB1 is not in the residue template for CYS #433 in chain E
Atom HB1 is not in the residue template for MET #434 in chain E
Atom HB1 is not in the residue template for TYR #435 in chain E
Atom HB1 is not in the residue template for PRO #437 in chain E
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #439 in chain E
Atom HB1 is not in the residue template for GLN #440 in chain E
Atom HA1 is not in the residue template for GLY #441 in chain E
Atom HG11 is not in the residue template for ILE #443 in chain E
Atom HB1 is not in the residue template for ARG #444 in chain E
Atom HB1 is not in the residue template for CYS #445 in chain E
Atom HB1 is not in the residue template for SER #447 in chain E
Atom HB1 is not in the residue template for ASN #448 in chain E
Atom HG11 is not in the residue template for ILE #449 in chain E
Atom HA1 is not in the residue template for GLY #451 in chain E
Atom HB1 is not in the residue template for LEU #452 in chain E
Atom HG11 is not in the residue template for ILE #453 in chain E
Atom HB1 is not in the residue template for LEU #454 in chain E
Atom HB1 is not in the residue template for ARG #456 in chain E
Atom HB1 is not in the residue template for ASP #457 in chain E
Atom HA1 is not in the residue template for GLY #458 in chain E
Atom HA1 is not in the residue template for GLY #459 in chain E
Atom HB1 is not in the residue template for SER #460 in chain E
Atom HB1 is not in the residue template for ASN #462 in chain E
Atom HB1 is not in the residue template for SER #463 in chain E
Atom HB1 is not in the residue template for GLU #466 in chain E
Atom HB1 is not in the residue template for PHE #468 in chain E
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #471 in chain E
Atom HA1 is not in the residue template for GLY #472 in chain E
Atom HA1 is not in the residue template for GLY #473 in chain E
Atom HB1 is not in the residue template for ASP #474 in chain E
Atom HB1 is not in the residue template for MET #475 in chain E
Atom HB1 is not in the residue template for ARG #476 in chain E
Atom HB1 is not in the residue template for ASP #477 in chain E
Atom HB1 is not in the residue template for ASN #478 in chain E
10 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #491 in chain E
Atom HB1 is not in the residue template for GLU #492 in chain E
Atom HB1 is not in the residue template for PRO #493 in chain E
Atom HB1 is not in the residue template for LEU #494 in chain E
Atom HA1 is not in the residue template for GLY #495 in chain E
Atom HB1 is not in the residue template for PRO #498 in chain E
Atom HB1 is not in the residue template for ARG #500 in chain E
Atom HB1 is not in the residue template for CYS #501 in chain E
Atom HB1 is not in the residue template for LYS #502 in chain E
Atom HB1 is not in the residue template for ARG #503 in chain E
1 messages similar to the above omitted
Atom HN is not in the residue template for NAG #3932 in chain E
Atom H11 is not in the residue template for NAG #3943 in chain E
Atom HN is not in the residue template for NAG #3944 in chain E
Atom H11 is not in the residue template for NAG #3961 in chain E
Atom H11 is not in the residue template for NAG #3964 in chain E
Atom H11 is not in the residue template for MAN #3969 in chain E
Atom HA1 is not in the residue template for GLY #514 in chain F
Atom HG11 is not in the residue template for ILE #515 in chain F
Atom HA1 is not in the residue template for GLY #516 in chain F
Atom HB1 is not in the residue template for PHE #519 in chain F
Atom HB1 is not in the residue template for LEU #520 in chain F
Atom HA1 is not in the residue template for GLY #521 in chain F
Atom HB1 is not in the residue template for PHE #522 in chain F
Atom HB1 is not in the residue template for LEU #523 in chain F
Atom HA1 is not in the residue template for GLY #524 in chain F
Atom HA1 is not in the residue template for GLY #527 in chain F
Atom HB1 is not in the residue template for SER #528 in chain F
Atom HB1 is not in the residue template for MET #530 in chain F
Atom HA1 is not in the residue template for GLY #531 in chain F
Atom HB1 is not in the residue template for SER #534 in chain F
Atom HB1 is not in the residue template for MET #535 in chain F
Atom HB1 is not in the residue template for LEU #537 in chain F
Atom HB1 is not in the residue template for GLN #540 in chain F
Atom HB1 is not in the residue template for ARG #542 in chain F
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #547 in chain F
Atom HG11 is not in the residue template for ILE #548 in chain F
Atom HB1 is not in the residue template for GLN #550 in chain F
Atom HB1 is not in the residue template for GLN #551 in chain F
Atom HB1 is not in the residue template for GLN #552 in chain F
Atom HB1 is not in the residue template for SER #553 in chain F
Atom HB1 is not in the residue template for ASN #554 in chain F
13 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #572 in chain F
Atom HG11 is not in the residue template for ILE #573 in chain F
Atom HB1 is not in the residue template for LYS #574 in chain F
Atom HB1 is not in the residue template for GLN #575 in chain F
Atom HB1 is not in the residue template for LEU #576 in chain F
Atom HB1 is not in the residue template for GLN #577 in chain F
Atom HB1 is not in the residue template for ARG #579 in chain F
11 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #594 in chain F
Atom HG11 is not in the residue template for ILE #595 in chain F
Atom HB1 is not in the residue template for TRP #596 in chain F
Atom HA1 is not in the residue template for GLY #597 in chain F
Atom HB1 is not in the residue template for CYS #598 in chain F
Atom HB1 is not in the residue template for SER #599 in chain F
Atom HA1 is not in the residue template for GLY #600 in chain F
Atom HB1 is not in the residue template for LYS #601 in chain F
Atom HB1 is not in the residue template for LEU #602 in chain F
Atom HG11 is not in the residue template for ILE #603 in chain F
Atom HB1 is not in the residue template for CYS #604 in chain F
Atom HB1 is not in the residue template for CYS #605 in chain F
Atom HB1 is not in the residue template for ASN #607 in chain F
Atom HB1 is not in the residue template for PRO #609 in chain F
Atom HB1 is not in the residue template for TRP #610 in chain F
11 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #622 in chain F
Atom HB1 is not in the residue template for TRP #623 in chain F
Atom HB1 is not in the residue template for ASP #624 in chain F
Atom HB1 is not in the residue template for ASN #625 in chain F
Atom HB1 is not in the residue template for MET #626 in chain F
Atom HB1 is not in the residue template for TRP #628 in chain F
6 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #635 in chain F
Atom HB1 is not in the residue template for SER #636 in chain F
Atom HB1 is not in the residue template for ASN #637 in chain F
Atom HB1 is not in the residue template for TYR #638 in chain F
Atom HB1 is not in the residue template for GLN #640 in chain F
Atom HG11 is not in the residue template for ILE #641 in chain F
Atom HG11 is not in the residue template for ILE #642 in chain F
Atom HB1 is not in the residue template for TYR #643 in chain F
Atom HA1 is not in the residue template for GLY #644 in chain F
Atom HB1 is not in the residue template for LEU #645 in chain F
Atom HB1 is not in the residue template for LEU #646 in chain F
Atom HB1 is not in the residue template for GLU #647 in chain F
Atom HB1 is not in the residue template for GLU #648 in chain F
Atom HB1 is not in the residue template for SER #649 in chain F
14 messages similar to the above omitted
Atom H1 is not in the residue template for GLN #1 in chain G
Atom H1 is not in the residue template for GLN #1 in chain H
Atom HB1 is not in the residue template for GLU #33 in chain I
Atom HB1 is not in the residue template for ASN #34 in chain I
Atom HB1 is not in the residue template for LEU #35 in chain I
Atom HB1 is not in the residue template for TRP #36 in chain I
Atom HB1 is not in the residue template for TYR #40 in chain I
1 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #42 in chain I
Atom HB1 is not in the residue template for PRO #44 in chain I
Atom HB1 is not in the residue template for TRP #46 in chain I
Atom HB1 is not in the residue template for LYS #47 in chain I
Atom HB1 is not in the residue template for ASP #48 in chain I
Atom HB1 is not in the residue template for GLU #50 in chain I
22 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #85 in chain I
Atom HB1 is not in the residue template for HIS #86 in chain I
Atom HB1 is not in the residue template for LEU #87 in chain I
Atom HB1 is not in the residue template for GLU #88 in chain I
Atom HB1 is not in the residue template for ASN #89 in chain I
Atom HB1 is not in the residue template for GLU #92 in chain I
14 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #109 in chain I
Atom HG11 is not in the residue template for ILE #110 in chain I
Atom HB1 is not in the residue template for SER #111 in chain I
Atom HB1 is not in the residue template for LEU #112 in chain I
Atom HB1 is not in the residue template for TRP #113 in chain I
Atom HB1 is not in the residue template for ASP #114 in chain I
Atom HB1 is not in the residue template for GLN #115 in chain I
16 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #144 in chain I
Atom HB1 is not in the residue template for ARG #152 in chain I
Atom HA1 is not in the residue template for GLY #153 in chain I
Atom HB1 is not in the residue template for GLU #154 in chain I
Atom HB1 is not in the residue template for LEU #155 in chain I
Atom HB1 is not in the residue template for LYS #156 in chain I
Atom HB1 is not in the residue template for ASN #157 in chain I
Atom HB1 is not in the residue template for CYS #158 in chain I
21 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #186 in chain I
Atom HB1 is not in the residue template for ASN #187 in chain I
Atom HB1 is not in the residue template for SER #188 in chain I
Atom HB1 is not in the residue template for ASN #189 in chain I
Atom HB1 is not in the residue template for LYS #190 in chain I
Atom HB1 is not in the residue template for GLU #191 in chain I
3 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #195 in chain I
Atom HB1 is not in the residue template for ASN #196 in chain I
Atom HB1 is not in the residue template for CYS #197 in chain I
Atom HB1 is not in the residue template for ASN #198 in chain I
Atom HB1 is not in the residue template for SER #200 in chain I
Atom HB1 is not in the residue template for CYS #202 in chain I
8 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #214 in chain I
Atom HB1 is not in the residue template for PRO #215 in chain I
Atom HG11 is not in the residue template for ILE #216 in chain I
Atom HB1 is not in the residue template for HIS #217 in chain I
Atom HB1 is not in the residue template for TYR #218 in chain I
Atom HB1 is not in the residue template for CYS #219 in chain I
Atom HB1 is not in the residue template for PRO #221 in chain I
Atom HA1 is not in the residue template for GLY #223 in chain I
Atom HB1 is not in the residue template for PHE #224 in chain I
Atom HG11 is not in the residue template for ILE #226 in chain I
Atom HB1 is not in the residue template for LEU #227 in chain I
Atom HB1 is not in the residue template for LYS #228 in chain I
Atom HB1 is not in the residue template for CYS #229 in chain I
Atom HB1 is not in the residue template for LYS #230 in chain I
Atom HB1 is not in the residue template for ASP #231 in chain I
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #236 in chain I
Atom HA1 is not in the residue template for GLY #238 in chain I
Atom HB1 is not in the residue template for PRO #239 in chain I
Atom HB1 is not in the residue template for CYS #240 in chain I
Atom HB1 is not in the residue template for PRO #241 in chain I
Atom HB1 is not in the residue template for SER #242 in chain I
Atom HB1 is not in the residue template for SER #244 in chain I
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #251 in chain I
Atom HG11 is not in the residue template for ILE #252 in chain I
Atom HB1 is not in the residue template for LYS #253 in chain I
Atom HB1 is not in the residue template for PRO #254 in chain I
Atom HB1 is not in the residue template for SER #257 in chain I
Atom HB1 is not in the residue template for GLN #259 in chain I
Atom HB1 is not in the residue template for LEU #260 in chain I
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #264 in chain I
Atom HB1 is not in the residue template for SER #265 in chain I
Atom HB1 is not in the residue template for LEU #266 in chain I
Atom HB1 is not in the residue template for GLU #268 in chain I
Atom HB1 is not in the residue template for GLU #269 in chain I
Atom HB1 is not in the residue template for GLU #270 in chain I
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #273 in chain I
Atom HB1 is not in the residue template for ARG #274 in chain I
Atom HB1 is not in the residue template for SER #275 in chain I
Atom HB1 is not in the residue template for GLU #276 in chain I
Atom HB1 is not in the residue template for ASN #277 in chain I
Atom HG11 is not in the residue template for ILE #278 in chain I
Atom HB1 is not in the residue template for ASN #280 in chain I
Atom HB1 is not in the residue template for ASN #281 in chain I
Atom HB1 is not in the residue template for LYS #283 in chain I
Atom HB1 is not in the residue template for ASN #284 in chain I
Atom HG11 is not in the residue template for ILE #285 in chain I
Atom HB1 is not in the residue template for LEU #286 in chain I
Atom HB1 is not in the residue template for GLN #288 in chain I
Atom HB1 is not in the residue template for PHE #289 in chain I
Atom HB1 is not in the residue template for ASN #290 in chain I
Atom HB1 is not in the residue template for PRO #292 in chain I
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #295 in chain I
Atom HB1 is not in the residue template for ASN #296 in chain I
Atom HB1 is not in the residue template for CYS #297 in chain I
Atom HB1 is not in the residue template for ARG #299 in chain I
Atom HB1 is not in the residue template for PRO #300 in chain I
Atom HB1 is not in the residue template for ASN #301 in chain I
5 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #308 in chain I
Atom HB1 is not in the residue template for ARG #309 in chain I
Atom HG11 is not in the residue template for ILE #312 in chain I
Atom HA1 is not in the residue template for GLY #313 in chain I
Atom HB1 is not in the residue template for PRO #314 in chain I
Atom HA1 is not in the residue template for GLY #315 in chain I
Atom HB1 is not in the residue template for GLN #316 in chain I
Atom HB1 is not in the residue template for PHE #318 in chain I
Atom HB1 is not in the residue template for TYR #319 in chain I
Atom HA1 is not in the residue template for GLY #322 in chain I
Atom HB1 is not in the residue template for ASP #322A in chain I
Atom HG11 is not in the residue template for ILE #323 in chain I
Atom HG11 is not in the residue template for ILE #323A in chain I
Atom HA1 is not in the residue template for GLY #324 in chain I
Atom HB1 is not in the residue template for ASP #325 in chain I
Atom HG11 is not in the residue template for ILE #326 in chain I
Atom HB1 is not in the residue template for ARG #327 in chain I
Atom HB1 is not in the residue template for GLN #328 in chain I
Atom HB1 is not in the residue template for HIS #330 in chain I
Atom HB1 is not in the residue template for CYS #331 in chain I
Atom HB1 is not in the residue template for ASN #332 in chain I
6 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #343 in chain I
Atom HB1 is not in the residue template for LYS #344 in chain I
Atom HB1 is not in the residue template for LYS #347 in chain I
Atom HB1 is not in the residue template for GLN #348 in chain I
Atom HB1 is not in the residue template for LEU #349 in chain I
Atom HB1 is not in the residue template for ARG #350 in chain I
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #354 in chain I
Atom HB1 is not in the residue template for ASN #355 in chain I
Atom HB1 is not in the residue template for ASN #356 in chain I
Atom HG11 is not in the residue template for ILE #358 in chain I
Atom HG11 is not in the residue template for ILE #359 in chain I
Atom HB1 is not in the residue template for ARG #360 in chain I
Atom HB1 is not in the residue template for PHE #361 in chain I
Atom HB1 is not in the residue template for ASN #363 in chain I
Atom HB1 is not in the residue template for SER #364 in chain I
Atom HB1 is not in the residue template for SER #365 in chain I
Atom HA1 is not in the residue template for GLY #366 in chain I
Atom HA1 is not in the residue template for GLY #367 in chain I
Atom HB1 is not in the residue template for ASP #368 in chain I
Atom HB1 is not in the residue template for LEU #369 in chain I
Atom HB1 is not in the residue template for GLU #370 in chain I
Atom HB1 is not in the residue template for HIS #374 in chain I
Atom HB1 is not in the residue template for SER #375 in chain I
3 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #379 in chain I
Atom HA1 is not in the residue template for GLY #380 in chain I
Atom HB1 is not in the residue template for GLU #381 in chain I
Atom HB1 is not in the residue template for PHE #382 in chain I
Atom HB1 is not in the residue template for PHE #383 in chain I
Atom HB1 is not in the residue template for TYR #384 in chain I
Atom HB1 is not in the residue template for CYS #385 in chain I
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #389 in chain I
Atom HB1 is not in the residue template for LEU #390 in chain I
Atom HB1 is not in the residue template for PHE #391 in chain I
Atom HB1 is not in the residue template for ASN #392 in chain I
Atom HB1 is not in the residue template for SER #393 in chain I
Atom HB1 is not in the residue template for TRP #395 in chain I
Atom HG11 is not in the residue template for ILE #396 in chain I
Atom HB1 is not in the residue template for SER #405 in chain I
Atom HB1 is not in the residue template for ASN #406 in chain I
Atom HB1 is not in the residue template for ASN #407 in chain I
Atom HB1 is not in the residue template for ASP #412 in chain I
Atom HB1 is not in the residue template for SER #413 in chain I
Atom HG11 is not in the residue template for ILE #414 in chain I
Atom HB1 is not in the residue template for LEU #416 in chain I
Atom HB1 is not in the residue template for PRO #417 in chain I
Atom HB1 is not in the residue template for CYS #418 in chain I
Atom HB1 is not in the residue template for ARG #419 in chain I
Atom HG11 is not in the residue template for ILE #420 in chain I
Atom HB1 is not in the residue template for LYS #421 in chain I
Atom HB1 is not in the residue template for GLN #422 in chain I
Atom HG11 is not in the residue template for ILE #423 in chain I
Atom HG11 is not in the residue template for ILE #424 in chain I
Atom HB1 is not in the residue template for ASN #425 in chain I
Atom HB1 is not in the residue template for MET #426 in chain I
Atom HB1 is not in the residue template for TRP #427 in chain I
Atom HB1 is not in the residue template for GLN #428 in chain I
Atom HB1 is not in the residue template for ARG #429 in chain I
Atom HG11 is not in the residue template for ILE #430 in chain I
Atom HA1 is not in the residue template for GLY #431 in chain I
Atom HB1 is not in the residue template for GLN #432 in chain I
Atom HB1 is not in the residue template for CYS #433 in chain I
Atom HB1 is not in the residue template for MET #434 in chain I
Atom HB1 is not in the residue template for TYR #435 in chain I
Atom HB1 is not in the residue template for PRO #437 in chain I
1 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #439 in chain I
Atom HB1 is not in the residue template for GLN #440 in chain I
Atom HA1 is not in the residue template for GLY #441 in chain I
Atom HG11 is not in the residue template for ILE #443 in chain I
Atom HB1 is not in the residue template for ARG #444 in chain I
Atom HB1 is not in the residue template for CYS #445 in chain I
Atom HB1 is not in the residue template for SER #447 in chain I
Atom HB1 is not in the residue template for ASN #448 in chain I
Atom HG11 is not in the residue template for ILE #449 in chain I
Atom HA1 is not in the residue template for GLY #451 in chain I
Atom HB1 is not in the residue template for LEU #452 in chain I
Atom HG11 is not in the residue template for ILE #453 in chain I
Atom HB1 is not in the residue template for LEU #454 in chain I
Atom HB1 is not in the residue template for ARG #456 in chain I
Atom HB1 is not in the residue template for ASP #457 in chain I
Atom HA1 is not in the residue template for GLY #458 in chain I
Atom HA1 is not in the residue template for GLY #459 in chain I
Atom HB1 is not in the residue template for SER #460 in chain I
Atom HB1 is not in the residue template for ASN #462 in chain I
Atom HB1 is not in the residue template for SER #463 in chain I
Atom HB1 is not in the residue template for GLU #466 in chain I
Atom HB1 is not in the residue template for PHE #468 in chain I
2 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #471 in chain I
Atom HA1 is not in the residue template for GLY #472 in chain I
Atom HA1 is not in the residue template for GLY #473 in chain I
Atom HB1 is not in the residue template for ASP #474 in chain I
Atom HB1 is not in the residue template for MET #475 in chain I
Atom HB1 is not in the residue template for ARG #476 in chain I
Atom HB1 is not in the residue template for ASP #477 in chain I
Atom HB1 is not in the residue template for ASN #478 in chain I
10 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #491 in chain I
Atom HB1 is not in the residue template for GLU #492 in chain I
Atom HB1 is not in the residue template for PRO #493 in chain I
Atom HB1 is not in the residue template for LEU #494 in chain I
Atom HA1 is not in the residue template for GLY #495 in chain I
Atom HB1 is not in the residue template for PRO #498 in chain I
Atom HB1 is not in the residue template for ARG #500 in chain I
Atom HB1 is not in the residue template for CYS #501 in chain I
Atom HB1 is not in the residue template for LYS #502 in chain I
Atom HB1 is not in the residue template for ARG #503 in chain I
1 messages similar to the above omitted
Atom H11 is not in the residue template for MAN #3969 in chain I
Atom H11 is not in the residue template for NAG #3964 in chain I
Atom H11 is not in the residue template for NAG #3961 in chain I
Atom HN is not in the residue template for NAG #3944 in chain I
Atom H11 is not in the residue template for NAG #3943 in chain I
Atom HN is not in the residue template for NAG #3932 in chain I
Atom HA1 is not in the residue template for GLY #514 in chain J
Atom HG11 is not in the residue template for ILE #515 in chain J
Atom HA1 is not in the residue template for GLY #516 in chain J
Atom HB1 is not in the residue template for PHE #519 in chain J
Atom HB1 is not in the residue template for LEU #520 in chain J
Atom HA1 is not in the residue template for GLY #521 in chain J
Atom HB1 is not in the residue template for PHE #522 in chain J
Atom HB1 is not in the residue template for LEU #523 in chain J
Atom HA1 is not in the residue template for GLY #524 in chain J
Atom HA1 is not in the residue template for GLY #527 in chain J
Atom HB1 is not in the residue template for SER #528 in chain J
Atom HB1 is not in the residue template for MET #530 in chain J
Atom HA1 is not in the residue template for GLY #531 in chain J
Atom HB1 is not in the residue template for SER #534 in chain J
Atom HB1 is not in the residue template for MET #535 in chain J
Atom HB1 is not in the residue template for LEU #537 in chain J
Atom HB1 is not in the residue template for GLN #540 in chain J
Atom HB1 is not in the residue template for ARG #542 in chain J
4 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #547 in chain J
Atom HG11 is not in the residue template for ILE #548 in chain J
Atom HB1 is not in the residue template for GLN #550 in chain J
Atom HB1 is not in the residue template for GLN #551 in chain J
Atom HB1 is not in the residue template for GLN #552 in chain J
Atom HB1 is not in the residue template for SER #553 in chain J
Atom HB1 is not in the residue template for ASN #554 in chain J
13 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #572 in chain J
Atom HG11 is not in the residue template for ILE #573 in chain J
Atom HB1 is not in the residue template for LYS #574 in chain J
Atom HB1 is not in the residue template for GLN #575 in chain J
Atom HB1 is not in the residue template for LEU #576 in chain J
Atom HB1 is not in the residue template for GLN #577 in chain J
Atom HB1 is not in the residue template for ARG #579 in chain J
11 messages similar to the above omitted
Atom HA1 is not in the residue template for GLY #594 in chain J
Atom HG11 is not in the residue template for ILE #595 in chain J
Atom HB1 is not in the residue template for TRP #596 in chain J
Atom HA1 is not in the residue template for GLY #597 in chain J
Atom HB1 is not in the residue template for CYS #598 in chain J
Atom HB1 is not in the residue template for SER #599 in chain J
Atom HA1 is not in the residue template for GLY #600 in chain J
Atom HB1 is not in the residue template for LYS #601 in chain J
Atom HB1 is not in the residue template for LEU #602 in chain J
Atom HG11 is not in the residue template for ILE #603 in chain J
Atom HB1 is not in the residue template for CYS #604 in chain J
Atom HB1 is not in the residue template for CYS #605 in chain J
Atom HB1 is not in the residue template for ASN #607 in chain J
Atom HB1 is not in the residue template for PRO #609 in chain J
Atom HB1 is not in the residue template for TRP #610 in chain J
11 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #622 in chain J
Atom HB1 is not in the residue template for TRP #623 in chain J
Atom HB1 is not in the residue template for ASP #624 in chain J
Atom HB1 is not in the residue template for ASN #625 in chain J
Atom HB1 is not in the residue template for MET #626 in chain J
Atom HB1 is not in the residue template for TRP #628 in chain J
6 messages similar to the above omitted
Atom HG11 is not in the residue template for ILE #635 in chain J
Atom HB1 is not in the residue template for SER #636 in chain J
Atom HB1 is not in the residue template for ASN #637 in chain J
Atom HB1 is not in the residue template for TYR #638 in chain J
Atom HB1 is not in the residue template for GLN #640 in chain J
Atom HG11 is not in the residue template for ILE #641 in chain J
Atom HG11 is not in the residue template for ILE #642 in chain J
Atom HB1 is not in the residue template for TYR #643 in chain J
Atom HA1 is not in the residue template for GLY #644 in chain J
Atom HB1 is not in the residue template for LEU #645 in chain J
Atom HB1 is not in the residue template for LEU #646 in chain J
Atom HB1 is not in the residue template for GLU #647 in chain J
Atom HB1 is not in the residue template for GLU #648 in chain J
Atom HB1 is not in the residue template for SER #649 in chain J
14 messages similar to the above omitted
Atom H1 is not in the residue template for GLN #1 in chain K
Atom H1 is not in the residue template for GLN #1 in chain L
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for 2.cif #1
---
Chain | Description
A E I | ?
B F J | ?
C G K | ?
D H L | ?
> open "/Users/km503/Documents/VRC40/higher
> resolution/cryosparc_P4_J12_008_volume_map_sharp_local-zflip.mrc"
Opened cryosparc_P4_J12_008_volume_map_sharp_local-zflip.mrc, grid size
320,320,320, pixel 1.08, shown at level 0.667, step 2, values float32
> clipper associate #2 toModel #1
Chain information for 2.cif
---
Chain | Description
1.1/A 1.1/E 1.1/I | ?
1.1/B 1.1/F 1.1/J | ?
1.1/C 1.1/G 1.1/K | ?
1.1/D 1.1/H 1.1/L | ?
> addh
Summary of feedback from adding hydrogens to 2.cif #1.1
---
warnings | Not adding hydrogens to /I ASP 412 N because it is missing heavy-
atom bond partners
Not adding hydrogens to /I ASP 412 C because it is missing heavy-atom bond
partners
Not adding hydrogens to /I ASP 412 CB because it is missing heavy-atom bond
partners
Skipped 16 atom(s) with bad connectivities; see log for details
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: /I ASP 412 N
notes | No usable SEQRES records for 2.cif (#1.1) chain A; guessing termini
instead
No usable SEQRES records for 2.cif (#1.1) chain B; guessing termini instead
No usable SEQRES records for 2.cif (#1.1) chain C; guessing termini instead
No usable SEQRES records for 2.cif (#1.1) chain D; guessing termini instead
No usable SEQRES records for 2.cif (#1.1) chain E; guessing termini instead
7 messages similar to the above omitted
Chain-initial residues that are actual N termini: /C GLN 1, /D GLN 1, /G GLN
1, /H GLN 1, /K GLN 1, /L GLN 1
Chain-initial residues that are not actual N termini: /A ALA 32, /B ALA 512,
/E ALA 32, /F ALA 512, /I ALA 32, /J ALA 512
Chain-final residues that are actual C termini:
Chain-final residues that are not actual C termini: /A VAL 505, /B ASP 664, /C
SER 230, /D CYS 214, /E VAL 505, /F ASP 664, /G SER 230, /H CYS 214, /I VAL
505, /J ASP 664, /K SER 230, /L CYS 214
Skipping possible acceptor with bad geometry: /E NAG 3944 O7
Wrong number of grandchild atoms for phi/psi acceptor /E NAG 3944 O7
Skipping possible acceptor with bad geometry: /A NAG 3932 O7
Wrong number of grandchild atoms for phi/psi acceptor /A NAG 3932 O7
Skipping possible acceptor with bad geometry: /I NAG 3932 O7
Wrong number of grandchild atoms for phi/psi acceptor /I NAG 3932 O7
Skipping possible acceptor with bad geometry: /E NAG 3932 O7
Wrong number of grandchild atoms for phi/psi acceptor /E NAG 3932 O7
Skipping possible acceptor with bad geometry: /I NAG 3932 O7
Wrong number of grandchild atoms for phi/psi acceptor /I NAG 3932 O7
11 messages similar to the above omitted
2845 hydrogen bonds
/A VAL 505 is not terminus, removing H atom from 'C'
/B ASP 664 is not terminus, removing H atom from 'C'
/C SER 230 is not terminus, removing H atom from 'C'
/D CYS 214 is not terminus, removing H atom from 'C'
/E VAL 505 is not terminus, removing H atom from 'C'
7 messages similar to the above omitted
3 hydrogens added
> select #1
51608 atoms, 52255 bonds, 7 models selected
> toolshed show ISOLDE
> set selectionWidth 4
Done loading forcefield
> clipper associate #2 toModel #1
QWidget::repaint: Recursive repaint detected
No template found for residue A3943 (NAG)
Excluding residue
No template found for residue A3944 (NAG)
Excluding residue
No template found for residue A3961 (NAG)
Excluding residue
No template found for residue A3964 (NAG)
Excluding residue
No template found for residue A3969 (MAN)
Excluding residue
No template found for residue I3961 (NAG)
Excluding residue
> set bgColor white
> close session
> open "/Users/km503/Documents/VRC40/higher resolution/VRC40-trimer-
> rsr40_real_space_refined-coot-0.pdb"
Summary of feedback from opening /Users/km503/Documents/VRC40/higher
resolution/VRC40-trimer-rsr40_real_space_refined-coot-0.pdb
---
warnings | Start residue of secondary structure not found: HELIX 16 16 PHE H
29 ASP H 31 5 3
Start residue of secondary structure not found: HELIX 17 17 HIS H 62 PHE H 64
5 3
Start residue of secondary structure not found: HELIX 18 18 SER H 93 ASP H 95
5 3
Start residue of secondary structure not found: HELIX 19 19 ASN H 170 GLY H
172 5 3
Start residue of secondary structure not found: HELIX 20 20 SER H 201 SER H
203 5 3
43 messages similar to the above omitted
End residue of secondary structure not found: HELIX 67 67 SER K 80 ASP K 82 5
3
Start residue of secondary structure not found: HELIX 68 68 ASP K 122 LEU K
125 1 4
Start residue of secondary structure not found: HELIX 69 69 LYS K 183 LYS K
188 1 6
Start residue of secondary structure not found: SHEET 1 K 4 GLN H 3 GLN H 6 0
Start residue of secondary structure not found: SHEET 2 K 4 VAL H 18 SER H 25
-1 N SER H 25 O GLN H 3
Start residue of secondary structure not found: SHEET 3 K 4 LEU H 81 LEU H 88
-1 N LEU H 88 O VAL H 18
2 messages similar to the above omitted
End residue of secondary structure not found: SHEET 2 L 6 SER H 121 VAL H 125
1 N ILE H 124 O GLN H 10
Start residue of secondary structure not found: SHEET 3 L 6 ALA H 97 ARG H 103
-1 N TYR H 99 O SER H 121
Start residue of secondary structure not found: SHEET 4 L 6 LEU H 33 LEU H 39
-1 N LEU H 39 O ILE H 98
Start residue of secondary structure not found: SHEET 5 L 6 LEU H 45 ASN H 52
-1 N ILE H 51 O ILE H 34
Start residue of secondary structure not found: SHEET 6 L 6 MET H 58 LEU H 60
-1 N TYR H 59 O ARG H 50
Start residue of secondary structure not found: SHEET 1 M 4 SER H 135 LEU H
139 0
6 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 T 2 TRP C 36 TYR C 41 0
Start residue of secondary structure not found: SHEET 2 T 2 LEU C 494 THR C
499 -1 N THR C 499 O TRP C 36
Start residue of secondary structure not found: SHEET 1 U 2 CYS C 55 SER C 57
0
Start residue of secondary structure not found: SHEET 2 U 2 ILE C 216 TYR C
218 -1 N HIS C 217 O ALA C 56
Start residue of secondary structure not found: SHEET 1 V 4 GLU C 84 HIS C 86
0
Start residue of secondary structure not found: SHEET 2 V 4 VAL C 243 VAL C
246 -1 N THR C 245 O ILE C 85
52 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 AM 2 TRP G 36 TYR G 41 0
Start residue of secondary structure not found: SHEET 2 AM 2 LEU G 494 THR G
499 -1 N THR G 499 O TRP G 36
Start residue of secondary structure not found: SHEET 1 AN 2 CYS G 55 SER G 57
0
Start residue of secondary structure not found: SHEET 2 AN 2 ILE G 216 TYR G
218 -1 N HIS G 217 O ALA G 56
Start residue of secondary structure not found: SHEET 1 AO 4 GLU G 84 HIS G 86
0
Start residue of secondary structure not found: SHEET 2 AO 4 VAL G 243 VAL G
246 -1 N THR G 245 O ILE G 85
41 messages similar to the above omitted
End residue of secondary structure not found: SHEET 2 BB 2 ARG K 103 MET K 106
1 N ARG K 103 O LEU K 11
Start residue of secondary structure not found: SHEET 1 BC 3 LEU K 85 GLN K 90
0
Start residue of secondary structure not found: SHEET 2 BC 3 ILE K 33 LEU K 38
-1 N LEU K 38 O LEU K 85
Start residue of secondary structure not found: SHEET 3 BC 3 ARG K 45 VAL K 48
-1 N VAL K 48 O TRP K 35
Start residue of secondary structure not found: SHEET 1 BD 4 SER K 114 PHE K
118 0
Start residue of secondary structure not found: SHEET 2 BD 4 THR K 129 ASN K
137 -1 N ASN K 137 O SER K 114
5 messages similar to the above omitted
Cannot find LINK/SSBOND residue CYS (22 )
Cannot find LINK/SSBOND residue CYS (155 )
Cannot find LINK/SSBOND residue CYS (120 )
Cannot find LINK/SSBOND residue CYS (127 )
Cannot find LINK/SSBOND residue CYS (132 )
27 messages similar to the above omitted
Chain information for VRC40-trimer-rsr40_real_space_refined-coot-0.pdb #1
---
Chain | Description
A E I | No description available
B F J | No description available
C G K | No description available
D H L | No description available
Traceback (most recent call last):
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1027, in _update_model_list
self._update_sim_control_button_states()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1127, in
_update_sim_control_button_states
self._selection_changed()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1062, in _selection_changed
self._clear_rotamer()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 2092, in _clear_rotamer
rrm = session_extensions.get_rotamer_restraint_mgr(self.selected_model)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/session_extensions.py", line 81, in
get_rotamer_restraint_mgr
return RotamerRestraintMgr(model)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/molobject.py", line 3939, in __init__
session=model.session
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 67, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute 'session'
Error processing trigger "add models":
AttributeError: 'Structure' object has no attribute 'session'
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 67, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Exception ignored in: <function Drawing.__del__ at 0x11c3d9200>
Traceback (most recent call last):
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 1111, in __del__
if not self.was_deleted:
AttributeError: 'RotamerRestraintMgr' object has no attribute 'was_deleted'
> open "/Users/km503/Documents/VRC40/higher
> resolution/cryosparc_P4_J12_008_volume_map_sharp_local-zflip.mrc"
Opened cryosparc_P4_J12_008_volume_map_sharp_local-zflip.mrc, grid size
320,320,320, pixel 1.08, shown at level 0.667, step 2, values float32
Traceback (most recent call last):
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1027, in _update_model_list
self._update_sim_control_button_states()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1127, in
_update_sim_control_button_states
self._selection_changed()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 1062, in _selection_changed
self._clear_rotamer()
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/isolde.py", line 2092, in _clear_rotamer
rrm = session_extensions.get_rotamer_restraint_mgr(self.selected_model)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/session_extensions.py", line 81, in
get_rotamer_restraint_mgr
return RotamerRestraintMgr(model)
File "/Users/km503/Library/Application Support/ChimeraX/0.91/site-
packages/chimerax/isolde/molobject.py", line 3939, in __init__
session=model.session
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_
return base.__getattr__(self, attr_name, look_in_class=base)
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_
return look_in_class._attr_registration.get_attr(attr_name)
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 67, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
AttributeError: 'Structure' object has no attribute 'session'
Error processing trigger "add models":
AttributeError: 'Structure' object has no attribute 'session'
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 67, in get_attr
raise AttributeError("'%s' object has no attribute '%s'" %
(self.class_.__name__, attr_name)) from None
See log for complete Python traceback.
Exception ignored in: <function Drawing.__del__ at 0x11c3d9200>
Traceback (most recent call last):
File
"/private/var/folders/xv/05d2bhc950b8q5xxkg5j9c25qc0nm9/T/AppTranslocation/B6580261-F293-445B-B741-22CF924E0E3F/d/ChimeraX-0.91.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/graphics/drawing.py", line 1111, in __del__
if not self.was_deleted:
AttributeError: 'RotamerRestraintMgr' object has no attribute 'was_deleted'
OpenGL version: 4.1 ATI-3.5.5
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (4)
comment:1 by , 6 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ISOLDE referencing a Structure that's been deleted |
comment:2 by , 6 years ago
comment:3 by , 6 years ago
Hmm... as it turns out I can't reproduce this - which could mean I've already fixed it while doing something else, or it could just be that I haven't hit on the exact combination of events needed to trigger it. Can you tell me any more about what you were doing?
comment:4 by , 3 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
All the scenarios I know of that could potentially lead to this error are now caught and handled.
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Sorry about this one. Looks like what happened is that you closed the model while a rotamer preview was still being displayed, and I hadn't thought to handle that eventuality. Will fix for the next release.