![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#2895 closed defect (fixed)
Crash during close
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.3.0-x86_64-i386-64bit
ChimeraX Version: 0.92 (2020-02-27)
Description
Last time you used ChimeraX it crashed.
Had 4 structures open 4u25, 4u25 assembly 1, 4hus, 4hur, soft lighting, had selected a few ligands ACO, virginamycin. Then I typed commmand "close" and it crashed.
Process: ChimeraX [13834]
Path: /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [13834]
User ID: 501
Date/Time: 2020-02-27 17:24:52.285 -0800
OS Version: Mac OS X 10.15.3 (19D76)
Report Version: 12
Anonymous UUID: 766E337C-4F5E-2774-C27E-AD8F8656F11F
Sleep/Wake UUID: FB607EE3-58D3-41D2-8132-6933651D739B
Time Awake Since Boot: 120000 seconds
Time Since Wake: 26000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000001319a5c00
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x1319a5c00:
VM_ALLOCATE 00000001315e0000-0000000131620000 [ 256K] rw-/rwx SM=PRV
-->
VM_ALLOCATE 00000001319df000-0000000131a1f000 [ 256K] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff65f0a7fa __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff65fc7bc1 pthread_kill + 432
2 libsystem_c.dylib 0x00007fff65e213a2 raise + 26
3 libsystem_platform.dylib 0x00007fff65fbc42d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000107d55f48 subtype_dealloc + 408
6 org.python.python 0x0000000107d365c9 free_keys_object + 137
7 org.python.python 0x0000000107d38cd8 dict_dealloc + 200
8 org.python.python 0x0000000107d22b46 func_dealloc + 198
9 org.python.python 0x0000000107d38c94 dict_dealloc + 132
10 org.python.python 0x0000000107d56264 subtype_dealloc + 1204
11 org.python.python 0x0000000107d4d2d0 set_clear_internal + 528
12 org.python.python 0x0000000107d504c9 set_clear + 9
13 org.python.python 0x0000000107d0c0fe _PyMethodDef_RawFastCallKeywords + 798
14 org.python.python 0x0000000107d11b82 _PyMethodDescr_FastCallKeywords + 82
15 org.python.python 0x0000000107dd505b call_function + 763
16 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
17 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
18 org.python.python 0x0000000107dd5031 call_function + 721
19 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
20 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
21 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
22 org.python.python 0x0000000107dd5031 call_function + 721
23 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
24 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
25 org.python.python 0x0000000107dd5031 call_function + 721
26 org.python.python 0x0000000107dcd70b _PyEval_EvalFrameDefault + 5707
27 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
28 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
29 org.python.python 0x0000000107dd5031 call_function + 721
30 org.python.python 0x0000000107dcd67a _PyEval_EvalFrameDefault + 5562
31 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
32 org.python.python 0x0000000107dd5031 call_function + 721
33 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
34 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
35 org.python.python 0x0000000107dd5031 call_function + 721
36 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
37 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
38 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
39 org.python.python 0x0000000107dd5031 call_function + 721
40 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
41 org.python.python 0x0000000107d1a228 gen_send_ex + 248
42 org.python.python 0x0000000107dca254 builtin_next + 100
43 org.python.python 0x0000000107d0c08e _PyMethodDef_RawFastCallKeywords + 686
44 org.python.python 0x0000000107d0b3dc _PyCFunction_FastCallKeywords + 44
45 org.python.python 0x0000000107dd4fc9 call_function + 617
46 org.python.python 0x0000000107dcd70b _PyEval_EvalFrameDefault + 5707
47 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
48 org.python.python 0x0000000107d0c3b6 _PyObject_Call_Prepend + 150
49 org.python.python 0x0000000107d0ac08 _PyObject_FastCallDict + 360
50 org.python.python 0x0000000107dcd3e5 _PyEval_EvalFrameDefault + 4901
51 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
52 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
53 org.python.python 0x0000000107dd5031 call_function + 721
54 org.python.python 0x0000000107dcd660 _PyEval_EvalFrameDefault + 5536
55 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
56 org.python.python 0x0000000107d0ae72 _PyFunction_FastCallDict + 450
57 org.python.python 0x0000000107d0c3b6 _PyObject_Call_Prepend + 150
58 org.python.python 0x0000000107d0b4f8 PyObject_Call + 136
59 QtCore.so 0x0000000114b14f17 PyQtSlot::call(_object*, _object*) const + 39
60 QtCore.so 0x0000000114b14e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
61 QtCore.so 0x0000000114b15925 PyQtSlotProxy::unislot(void**) + 85
62 QtCore.so 0x0000000114b1589a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
63 QtCore 0x0000000115b6a5cd QMetaObject::activate(QObject*, int, int, void**) + 1773
64 QtCore 0x0000000115b6ab1c QMetaObject::activate(QObject*, int, int, void**) + 3132
65 QtWidgets 0x0000000114fb9a17 QWidgetLineControl::processKeyEvent(QKeyEvent*) + 551
66 QtWidgets 0x0000000114fb06d2 QLineEdit::keyPressEvent(QKeyEvent*) + 34
67 QtWidgets 0x0000000114eab65f QWidget::event(QEvent*) + 527
68 QtWidgets 0x0000000114fafa37 QLineEdit::event(QEvent*) + 727
69 QtWidgets 0x0000000114f744f0 QComboBox::keyPressEvent(QKeyEvent*) + 784
70 QtWidgets.so 0x000000011464423b meth_QComboBox_keyPressEvent(_object*, _object*) + 139
71 org.python.python 0x0000000107d0bedb _PyMethodDef_RawFastCallKeywords + 251
72 org.python.python 0x0000000107d0b3dc _PyCFunction_FastCallKeywords + 44
73 org.python.python 0x0000000107dd4fc9 call_function + 617
74 org.python.python 0x0000000107dcd67a _PyEval_EvalFrameDefault + 5562
75 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
76 org.python.python 0x0000000107d0ae72 _PyFunction_FastCallDict + 450
77 org.python.python 0x0000000107d0c3b6 _PyObject_Call_Prepend + 150
78 org.python.python 0x0000000107d0b4f8 PyObject_Call + 136
79 sip.so 0x00000001149daf6e call_method + 76
80 sip.so 0x00000001149d6d6b sip_api_call_procedure_method + 152
81 QtWidgets.so 0x00000001145479a7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
82 QtWidgets 0x0000000114eab65f QWidget::event(QEvent*) + 527
83 QtWidgets 0x0000000114f73e54 QComboBox::event(QEvent*) + 372
84 QtWidgets.so 0x0000000114546eb0 sipQComboBox::event(QEvent*) + 192
85 QtWidgets 0x0000000114e6f76d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
86 QtWidgets 0x0000000114e70cbc QApplication::notify(QObject*, QEvent*) + 924
87 QtWidgets.so 0x00000001145623ca sipQApplication::notify(QObject*, QEvent*) + 234
88 QtCore 0x0000000115b397c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
89 QtWidgets 0x0000000114eca3c1 0x114e5f000 + 439233
90 QtWidgets 0x0000000114ec97a1 0x114e5f000 + 436129
91 QtWidgets 0x0000000114e6f76d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
92 QtWidgets 0x0000000114e70b72 QApplication::notify(QObject*, QEvent*) + 594
93 QtWidgets.so 0x00000001145623ca sipQApplication::notify(QObject*, QEvent*) + 234
94 QtCore 0x0000000115b397c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
95 QtGui 0x0000000115435228 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 152
96 QtGui 0x000000011541b60b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
97 QtGui 0x0000000115416545 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581
98 libqcocoa.dylib 0x000000011f491548 0x11f463000 + 189768
99 libqcocoa.dylib 0x000000011f491718 0x11f463000 + 190232
100 com.apple.AppKit 0x00007fff2ba8bb98 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 6512
101 com.apple.AppKit 0x00007fff2ba8a005 -[NSWindow(NSEventRouting) sendEvent:] + 349
102 libqcocoa.dylib 0x000000011f494b25 0x11f463000 + 203557
103 com.apple.AppKit 0x00007fff2ba88ccf -[NSApplication(NSEvent) sendEvent:] + 2739
104 libqcocoa.dylib 0x000000011f49bb7a 0x11f463000 + 232314
105 com.apple.AppKit 0x00007fff2b8d40cf -[NSApplication run] + 707
106 libqcocoa.dylib 0x000000011f498253 0x11f463000 + 217683
107 QtCore 0x0000000115b34ddf QEventLoop::exec(QFlags) + 431
108 QtCore 0x0000000115b39dd2 QCoreApplication::exec() + 130
109 QtWidgets.so 0x00000001146517d2 meth_QApplication_exec_(_object*, _object*) + 82
110 org.python.python 0x0000000107d0bedb _PyMethodDef_RawFastCallKeywords + 251
111 org.python.python 0x0000000107d0b3dc _PyCFunction_FastCallKeywords + 44
112 org.python.python 0x0000000107dd4fc9 call_function + 617
113 org.python.python 0x0000000107dcd67a _PyEval_EvalFrameDefault + 5562
114 org.python.python 0x0000000107d0b893 function_code_fastcall + 195
115 org.python.python 0x0000000107dd5031 call_function + 721
116 org.python.python 0x0000000107dcd67a _PyEval_EvalFrameDefault + 5562
117 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
118 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
119 org.python.python 0x0000000107dd5031 call_function + 721
120 org.python.python 0x0000000107dcd70b _PyEval_EvalFrameDefault + 5707
121 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
122 org.python.python 0x0000000107dcc020 PyEval_EvalCode + 48
123 org.python.python 0x0000000107dc9683 builtin_exec + 563
124 org.python.python 0x0000000107d0c08e _PyMethodDef_RawFastCallKeywords + 686
125 org.python.python 0x0000000107d0b3dc _PyCFunction_FastCallKeywords + 44
126 org.python.python 0x0000000107dd4fc9 call_function + 617
127 org.python.python 0x0000000107dcd70b _PyEval_EvalFrameDefault + 5707
128 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
129 org.python.python 0x0000000107d0b396 _PyFunction_FastCallKeywords + 230
130 org.python.python 0x0000000107dd5031 call_function + 721
131 org.python.python 0x0000000107dcd70b _PyEval_EvalFrameDefault + 5707
132 org.python.python 0x0000000107dd5c84 _PyEval_EvalCodeWithName + 2788
133 org.python.python 0x0000000107d0ae72 _PyFunction_FastCallDict + 450
134 org.python.python 0x0000000107e2a0e3 pymain_run_module + 147
135 org.python.python 0x0000000107e291a1 pymain_main + 5041
136 org.python.python 0x0000000107e27de3 Py_Main + 51
137 edu.ucsf.cgl.ChimeraX 0x0000000107ce1e03 main + 579
138 libdyld.dylib 0x00007fff65dc37fd start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff65f06ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff65fc8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dev.dylib 0x00000001093e4c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff65f06ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff65fc8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dev.dylib 0x00000001093e4c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff65f06ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff65fc8185 _pthread_cond_wait + 701
2 libopenblasp-r0.3.7.dev.dylib 0x00000001093e4c0b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2e71fd0b __CFRunLoopServiceMachPort + 322
3 com.apple.CoreFoundation 0x00007fff2e71e8e7 __CFRunLoopRun + 1695
4 com.apple.CoreFoundation 0x00007fff2e71dbd3 CFRunLoopRunSpecific + 499
5 com.apple.AppKit 0x00007fff2ba86792 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a0c711d 0x117f68000 + 34992413
5 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff65f08bce kevent + 10
1 QtWebEngineCore 0x000000011a3d4a59 0x117f68000 + 38193753
2 QtWebEngineCore 0x000000011a3d1d6d 0x117f68000 + 38182253
3 QtWebEngineCore 0x000000011a188d8c 0x117f68000 + 35786124
4 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
5 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
6 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
7 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff65f08bce kevent + 10
1 QtWebEngineCore 0x000000011a3d4a59 0x117f68000 + 38193753
2 QtWebEngineCore 0x000000011a3d1d6d 0x117f68000 + 38182253
3 QtWebEngineCore 0x000000011a188d74 0x117f68000 + 35786100
4 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
5 QtWebEngineCore 0x000000011a131b34 0x117f68000 + 35429172
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1134e1 0x117f68000 + 35304673
4 QtWebEngineCore 0x000000011a12ade8 0x117f68000 + 35401192
5 QtWebEngineCore 0x000000011a12b71b 0x117f68000 + 35403547
6 QtWebEngineCore 0x000000011a12b384 0x117f68000 + 35402628
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1134e1 0x117f68000 + 35304673
4 QtWebEngineCore 0x000000011a12ade8 0x117f68000 + 35401192
5 QtWebEngineCore 0x000000011a12b71b 0x117f68000 + 35403547
6 QtWebEngineCore 0x000000011a12b384 0x117f68000 + 35402628
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1134e1 0x117f68000 + 35304673
4 QtWebEngineCore 0x000000011a12ade8 0x117f68000 + 35401192
5 QtWebEngineCore 0x000000011a12b71b 0x117f68000 + 35403547
6 QtWebEngineCore 0x000000011a12b2f4 0x117f68000 + 35402484
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1134e1 0x117f68000 + 35304673
4 QtWebEngineCore 0x000000011a12ade8 0x117f68000 + 35401192
5 QtWebEngineCore 0x000000011a12b71b 0x117f68000 + 35403547
6 QtWebEngineCore 0x000000011a12b2f4 0x117f68000 + 35402484
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff65f08bce kevent + 10
1 QtWebEngineCore 0x000000011a3d4a59 0x117f68000 + 38193753
2 QtWebEngineCore 0x000000011a3d1d6d 0x117f68000 + 38182253
3 QtWebEngineCore 0x000000011a188d74 0x117f68000 + 35786100
4 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
5 QtWebEngineCore 0x0000000119a565d4 0x117f68000 + 28239316
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a12adda 0x117f68000 + 35401178
5 QtWebEngineCore 0x000000011a12b47f 0x117f68000 + 35402879
6 QtWebEngineCore 0x000000011a12b324 0x117f68000 + 35402532
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 14:: CompositorTileWorker1/73987
0 libsystem_kernel.dylib 0x00007fff65f06ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff65fc8185 _pthread_cond_wait + 701
2 QtWebEngineCore 0x000000011a181058 0x117f68000 + 35754072
3 QtWebEngineCore 0x000000011b109658 0x117f68000 + 52041304
4 QtWebEngineCore 0x000000011a141754 0x117f68000 + 35493716
5 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
6 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a0c711d 0x117f68000 + 34992413
5 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a0c711d 0x117f68000 + 34992413
5 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 17:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a0c7112 0x117f68000 + 34992402
4 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
5 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
6 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
7 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff65f08bce kevent + 10
1 QtWebEngineCore 0x000000011a3d4a59 0x117f68000 + 38193753
2 QtWebEngineCore 0x000000011a3d1d6d 0x117f68000 + 38182253
3 QtWebEngineCore 0x000000011a188d8c 0x117f68000 + 35786124
4 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
5 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
6 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
7 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a12adda 0x117f68000 + 35401178
5 QtWebEngineCore 0x000000011a12b71b 0x117f68000 + 35403547
6 QtWebEngineCore 0x000000011a12b3e4 0x117f68000 + 35402724
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 20:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff65f06ce6 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff65fc8185 _pthread_cond_wait + 701
2 QtCore 0x000000011597ac9b 0x115950000 + 175259
3 QtCore 0x000000011597abfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000011509a7a2 0x114e5f000 + 2340770
5 QtCore 0x00000001159724a3 0x115950000 + 140451
6 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a0c711d 0x117f68000 + 34992413
5 QtWebEngineCore 0x000000011a0f0145 0x117f68000 + 35160389
6 QtWebEngineCore 0x000000011a142a7c 0x117f68000 + 35498620
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 22:: TaskSchedulerSingleThreadSharedForegroundBlocking2
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1132ef 0x117f68000 + 35304175
4 QtWebEngineCore 0x000000011a12adda 0x117f68000 + 35401178
5 QtWebEngineCore 0x000000011a12b47f 0x117f68000 + 35402879
6 QtWebEngineCore 0x000000011a12b3b4 0x117f68000 + 35402676
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff65fc3818 start_wqthread + 0
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff65f0425a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff65f045d0 mach_msg + 60
2 QtWebEngineCore 0x000000011a1133ed 0x117f68000 + 35304429
3 QtWebEngineCore 0x000000011a1134e1 0x117f68000 + 35304673
4 QtWebEngineCore 0x000000011a12ade8 0x117f68000 + 35401192
5 QtWebEngineCore 0x000000011a12b47f 0x117f68000 + 35402879
6 QtWebEngineCore 0x000000011a12b384 0x117f68000 + 35402628
7 QtWebEngineCore 0x000000011a1827c7 0x117f68000 + 35760071
8 libsystem_pthread.dylib 0x00007fff65fc7e65 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff65fc383b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000114e24dc0 rcx: 0x00007f86b8037a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f86b8037a80 rsp: 0x00007f86b8037a58
r8: 0x00007f86b8037f48 r9: 0xf0332d3f42a1e8e5 r10: 0x0000000114e24dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00000001319a5c10 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff65f0a7fa rfl: 0x0000000000000246 cr2: 0xffffffa400e90000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff63d26000 - 0x7fff63d3eff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff63d56000 - 0x7fff63dfdfff libmecab.dylib (883.1.1) /usr/lib/libmecab.dylib
0x7fff63dfe000 - 0x7fff64060fe1 libmecabra.dylib (883.1.1) /usr/lib/libmecabra.dylib
0x7fff643d0000 - 0x7fff643ffff7 libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6452e000 - 0x7fff649a4ff7 libnetwork.dylib (1880.60.5) /usr/lib/libnetwork.dylib
0x7fff649a5000 - 0x7fff649bbfff libnetworkextension.dylib (1095.60.2) /usr/lib/libnetworkextension.dylib
0x7fff64a43000 - 0x7fff64a74fc6 libobjc.A.dylib (781.2) /usr/lib/libobjc.A.dylib
0x7fff64a75000 - 0x7fff64a76ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff64a87000 - 0x7fff64a8bfff libpam.2.dylib (25) /usr/lib/libpam.2.dylib
0x7fff64a8e000 - 0x7fff64ac4ff7 libpcap.A.dylib (89.60.2) /usr/lib/libpcap.A.dylib
0x7fff64b02000 - 0x7fff64b10ff9 libperfcheck.dylib (37) /usr/lib/libperfcheck.dylib
0x7fff64b46000 - 0x7fff64b5eff7 libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff64b60000 - 0x7fff64ba4fff libsandbox.1.dylib (1217.80.1) /usr/lib/libsandbox.1.dylib
0x7fff64ba5000 - 0x7fff64bb7fff libsasl2.2.dylib (213) /usr/lib/libsasl2.2.dylib
0x7fff64bb8000 - 0x7fff64bb9ff7 libspindump.dylib (281.2) /usr/lib/libspindump.dylib
0x7fff64bba000 - 0x7fff64da7ff7 libsqlite3.dylib (308.4) /usr/lib/libsqlite3.dylib
0x7fff64e9b000 - 0x7fff64ec8ffb libssl.46.dylib (47.11.1) /usr/lib/libssl.46.dylib
0x7fff64f9d000 - 0x7fff64ff8ff8 libusrtcp.dylib (1880.60.5) /usr/lib/libusrtcp.dylib
0x7fff64ff9000 - 0x7fff64ffcffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff64ffd000 - 0x7fff6500afff libxar.1.dylib (420) /usr/lib/libxar.1.dylib
0x7fff65010000 - 0x7fff650f2ff7 libxml2.2.dylib (32.14) /usr/lib/libxml2.2.dylib
0x7fff650f6000 - 0x7fff6511efff libxslt.1.dylib (16.7) /usr/lib/libxslt.1.dylib
0x7fff6511f000 - 0x7fff65131ffb libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff65b95000 - 0x7fff65b9aff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff65b9b000 - 0x7fff65ba6fff libcommonCrypto.dylib (60165) /usr/lib/system/libcommonCrypto.dylib
0x7fff65ba7000 - 0x7fff65baefff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff65baf000 - 0x7fff65bb8fff libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff65bb9000 - 0x7fff65c50fdb libcorecrypto.dylib (866.80.2) /usr/lib/system/libcorecrypto.dylib
0x7fff65d67000 - 0x7fff65da8ff0 libdispatch.dylib (1173.60.1) /usr/lib/system/libdispatch.dylib
0x7fff65da9000 - 0x7fff65ddeff7 libdyld.dylib (733.8) /usr/lib/system/libdyld.dylib
0x7fff65ddf000 - 0x7fff65ddfffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff65de0000 - 0x7fff65decff7 libkxld.dylib (6153.81.5) /usr/lib/system/libkxld.dylib
0x7fff65ded000 - 0x7fff65dedff7 liblaunch.dylib (1738.80.8) /usr/lib/system/liblaunch.dylib
0x7fff65dee000 - 0x7fff65df3ff7 libmacho.dylib (949.0.1) /usr/lib/system/libmacho.dylib
0x7fff65df4000 - 0x7fff65df6ff7 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff65df7000 - 0x7fff65df8ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff65df9000 - 0x7fff65e10fff libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff65e11000 - 0x7fff65e11fff libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff65e12000 - 0x7fff65e99ff7 libsystem_c.dylib (1353.60.8) /usr/lib/system/libsystem_c.dylib
0x7fff65e9a000 - 0x7fff65e9dffb libsystem_configuration.dylib (1061.80.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff65e9e000 - 0x7fff65ea1ff7 libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff65ea2000 - 0x7fff65eaafff libsystem_darwin.dylib (1353.60.8) /usr/lib/system/libsystem_darwin.dylib
0x7fff65eab000 - 0x7fff65eb2ffb libsystem_dnssd.dylib (1096.60.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff65eb3000 - 0x7fff65eb4ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff65eb5000 - 0x7fff65f02fff libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff65f03000 - 0x7fff65f2fff7 libsystem_kernel.dylib (6153.81.5) /usr/lib/system/libsystem_kernel.dylib
0x7fff65f30000 - 0x7fff65f77fcf libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff65f78000 - 0x7fff65f9ffff libsystem_malloc.dylib (283.60.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff65fa0000 - 0x7fff65fadffb libsystem_networkextension.dylib (1095.60.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff65fae000 - 0x7fff65fb7ff3 libsystem_notify.dylib (241) /usr/lib/system/libsystem_notify.dylib
0x7fff65fb8000 - 0x7fff65fc1fef libsystem_platform.dylib (220) /usr/lib/system/libsystem_platform.dylib
0x7fff65fc2000 - 0x7fff65fccfff libsystem_pthread.dylib (416.60.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff65fcd000 - 0x7fff65fd1fff libsystem_sandbox.dylib (1217.80.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff65fd2000 - 0x7fff65fd4fff libsystem_secinit.dylib (62.80.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff65fd5000 - 0x7fff65fdcffb libsystem_symptoms.dylib (1238.60.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff65fdd000 - 0x7fff65ff3ff2 libsystem_trace.dylib (1147.80.3) /usr/lib/system/libsystem_trace.dylib
0x7fff65ff5000 - 0x7fff65ffaffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff65ffb000 - 0x7fff66030ffe libxpc.dylib (1738.80.8) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 8
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 54149
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=892.2M resident=0K(0%) swapped_out_or_unallocated=892.2M(100%)
Writable regions: Total=7.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=7.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 1760K 2
CG image 264K 20
CoreAnimation 112K 13
CoreGraphics 8K 1
CoreImage 24K 2
CoreServices 4K 1
CoreUI image data 3124K 25
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 5.9G 163
MALLOC guard page 48K 9
MALLOC_MEDIUM (reserved) 704.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 96K 24
Stack 155.2M 25
Stack Guard 56.0M 1
VM_ALLOCATE 152.6M 335
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 64.7M 539
__DATA_CONST 188K 16
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 374.0M 133
__OBJC_RO 32.0M 1
__OBJC_RW 1780K 2
__TEXT 518.2M 506
__UNICODE 564K 1
mapped file 79.9M 37
shared memory 652K 18
=========== ======= =======
TOTAL 8.2G 1901
TOTAL, minus reserved VM space 7.3G 1901
Log:
Startup Messages
---
warning | 'clip' is a prefix of an existing command 'clipper'
UCSF ChimeraX version: 0.92 (2020-02-27)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-3.5.5
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (5)
comment:2 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash during close |
I was just able to get this twice in a row using the daily build by (only) opening 4u25 and its assembly 1 and typing 'close'.
comment:5 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Prevent firing of delayed Sequence triggers if no one is listening to the trigger (Sequence.del can create temporary self reference and therefore execute multiple times, which seems to make the Python dict/set-clearing code crash).
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