![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jan 27, 2020:
- 7:33 PM Ticket #2778 (Picking segmented clusters: not enough values to unpack) closed by
- fixed: Fixed. Code that was logging what was picked in a drag select was …
- 7:31 PM ChangeLog edited by
- (diff)
- 4:05 PM Ticket #2780 (Error closing Help Viewer when page has 'page closed' URLs) closed by
- fixed: Appears to be a race condition in Qt WebEngine implementation where a …
- 4:03 PM Ticket #2776 (would like Settings.revert()) closed by
- fixed: Added 'reset' and 'restore' methods to settings, that fire the …
- 3:42 PM Ticket #2767 (Crash in free_keys_object/subtype_dealloc) closed by
- can't reproduce: I ran through a "trajectory" (NMR ensemble) with surface on for an …
- 2:07 PM Ticket #2780 (Error closing Help Viewer when page has 'page closed' URLs) created by
- […]
- 12:22 PM Ticket #2775 (Loading volume data: ModuleNotFoundError: No module named 'chimera') closed by
- fixed: Fixed. Fixed memory error reporting, and also issue user error if …
Jan 25, 2020:
- 5:34 AM Ticket #2779 (Problem saving session after segmentation regions deleted) created by
- […]
- 5:04 AM Ticket #2778 (Picking segmented clusters: not enough values to unpack) created by
- […]
- 1:55 AM Ticket #2777 (Tools can be placed offscreen) created by
- […]
Jan 24, 2020:
- 3:43 PM Ticket #2776 (would like Settings.revert()) created by
- Would like a core.Settings revert method that would revert the …
- 2:33 PM Ticket #2772 (Crash in mark_plane_edge_cuts) closed by
- fixed: Fixed. I introduced a bug a few days ago in the volume contour …
- 2:08 PM Ticket #2775 (Loading volume data: ModuleNotFoundError: No module named 'chimera') created by
- […]
- 1:57 PM Ticket #2770 (Return from Model Panel executes command three times(!)) closed by
- fixed: The main UI and tools were forwarding the same keystrokes to the …
- 1:35 PM Ticket #2774 (Showing title in log for model: not enough arguments for format string) closed by
- fixed
- 8:57 AM Ticket #2774 (Showing title in log for model: not enough arguments for format string) created by
- […]
- 8:42 AM Ticket #2773 (Crash installing ISOLDE(?)) created by
- […]
- 7:47 AM Ticket #2772 (Crash in mark_plane_edge_cuts) created by
- […]
- 1:13 AM Ticket #2771 (_openmm fails to load) created by
- […]
Jan 23, 2020:
- 8:03 PM Ticket #2770 (Return from Model Panel executes command three times(!)) created by
- […]
- 4:47 PM Ticket #2769 (mmCIF NMR reading bad for 'coordsets true') closed by
- fixed: Wans't finding existing residues to add coordinates to.
- 2:53 PM Ticket #2769 (mmCIF NMR reading bad for 'coordsets true') created by
- If I "open 2efi coord t", playing through the resulting trajectory …
- 1:14 PM Ticket #1872 (RFE: visual indicator on mouse-mode icons for which mode is active) closed by
- fixed: In the toolbar interface, the active mouse mode is "highlighted" with …
- 1:10 PM Ticket #2745 (closing tab in Help Viewer makes execution links in other tab no ...) closed by
- fixed: Fixed. Reorganized code so Help Viewer uses a single …
- 11:32 AM Ticket #2768 (Crash in free_keys_object/subtype_dealloc) closed by
- duplicate: Duplicate of #2767
- 9:58 AM Ticket #2768 (Crash in free_keys_object/subtype_dealloc) created by
- […]
Jan 22, 2020:
- 8:00 PM Ticket #2767 (Crash in free_keys_object/subtype_dealloc) created by
- […]
- 3:21 PM ChangeLog edited by
- (diff)
- 12:05 PM ChangeLog edited by
- (diff)
- 11:28 AM ChangeLog edited by
- (diff)
- 11:22 AM Ticket #2766 ("cartoon smooth" has no effect) closed by
- not a bug: Hi Paul, Smoothing is only applied to beta-strands, and 2HHB does not …
Jan 21, 2020:
- 7:08 PM Ticket #2766 ("cartoon smooth" has no effect) created by
- […]
- 4:53 PM Ticket #2758 (Place.rotation_axis_and_angle not robust) closed by
- fixed: Fixed. I put in special case code to handle the 180 degree rotation …
- 4:09 PM Ticket #2755 (Crash drawing Qt interface) closed by
- nonchimerax: This ChimeraX crash was in the Apple OpenGL graphics driver while Qt …
- 4:02 PM Ticket #2763 (Setting clip_cap property: 'Drawing' object has no attribute 'session') closed by
- fixed: Fixed. Clip caps used to work on a Drawing that is not a Model, but …
- 4:00 PM ChangeLog edited by
- (diff)
- 3:31 PM Ticket #2762 (Clip cap error with zero-length bond) closed by
- wontfix: BondDrawing is unusual in that its position instance matrices can be …
- 2:09 PM Ticket #2761 (mmCIF fetch: Compressed file ended before the end-of-stream marker was ...) closed by
- fixed: Made EOFError during fetch issue an error with explanation but not …
- 11:40 AM Ticket #2765 (Don't want silhouettes on volume meshes) created by
- […] image1.png
- 3:12 AM Ticket #2764 (ISOLDE not longer compatible with 0.9) created by
- […]
Jan 20, 2020:
- 6:29 AM Ticket #2763 (Setting clip_cap property: 'Drawing' object has no attribute 'session') created by
- […]
- 5:56 AM Ticket #2762 (Clip cap error with zero-length bond) created by
- […]
Jan 17, 2020:
- 10:37 PM Ticket #2761 (mmCIF fetch: Compressed file ended before the end-of-stream marker was ...) created by
- […]
- 11:02 AM Ticket #2759 ((corrupted stack?) crash) closed by
- can't reproduce
- 10:59 AM Ticket #2757 (Crash drawing Qt interface) closed by
- duplicate: Duplicate of #2755
- 10:58 AM Ticket #2756 (Crash drawing Qt interface) closed by
- duplicate: Duplicate of #2755
- 10:55 AM Ticket #2754 ((corrupted stack?) crash) closed by
- can't reproduce
- 10:54 AM Ticket #2753 ((stack corrupted?) crash) closed by
- can't reproduce
- 6:48 AM Ticket #2759 ((corrupted stack?) crash) created by
- […]
- 2:45 AM Ticket #2758 (Place.rotation_axis_and_angle not robust) created by
- […]
- 1:59 AM Ticket #2757 (Crash drawing Qt interface) created by
- […]
- 1:27 AM Ticket #2756 (Crash drawing Qt interface) created by
- […]
- 1:25 AM Ticket #2755 (Crash drawing Qt interface) created by
- […]
- 12:03 AM Ticket #2707 (Problem showing Toolbar help: failed to load external entity) closed by
- can't reproduce: Whoops :-). Can't reproduce this bug.
Jan 16, 2020:
- 10:17 PM Ticket #2754 ((corrupted stack?) crash) created by
- […]
- 7:00 PM Ticket #2753 ((stack corrupted?) crash) created by
- […]
- 5:55 PM Ticket #2752 (Save dialog has duplicate formats png and PNG) closed by
- fixed: Fixed. Registering the image settings options gui for the save dialog …
- 4:39 PM Ticket #2752 (Save dialog has duplicate formats png and PNG) created by
- […]
- 4:37 PM Ticket #2751 (Clip cap mistakenly remains visible) closed by
- fixed: Fixed. Clip plane change did not cause cap update because clip plane …
- 3:58 PM Ticket #2747 (Fetched map truncated) closed by
- fixed: The fetch worked fine for me on a Windows machine. I see from the …
- 2:12 PM Ticket #2746 (Graphics driver error/crash after fitting structure to map) closed by
- nonchimerax: This ChimeraX crash was caused by Apple's OpenGL graphics driver …
- 12:38 PM Ticket #2744 (Problem opening tif files with brackets in their name) closed by
- duplicate
- 12:33 PM Ticket #2742 (Problem restoring nucleotides in sessions) closed by
- duplicate: Fixed quite awhile back now.
Jan 15, 2020:
- 6:30 PM Ticket #2751 (Clip cap mistakenly remains visible) created by
- […]
- 6:16 PM Ticket #2750 (Certificate error fetching EDS map on some platforms) created by
- […]
- 5:27 PM PyQt created by
- 4:36 PM Ticket #2749 (ISOLDE installed into incompatible Ubuntu build of ChimeraX) created by
- […]
- 3:14 PM Ticket #2748 (GPU with insufficient OpenCL support leads to traceback in ISOLDE) created by
- […]
- 1:30 PM Ticket #2747 (Fetched map truncated) created by
- […]
- 11:46 AM Ticket #2746 (Graphics driver error/crash after fitting structure to map) created by
- […]
- 11:14 AM Ticket #2745 (closing tab in Help Viewer makes execution links in other tab no ...) created by
- maybe mac-specific... tested in 0.91 and in current daily build …
- 11:04 AM Ticket #2744 (Problem opening tif files with brackets in their name) created by
- […]
- 11:02 AM Ticket #2743 (Problem opening tif files with brackets in their name) created by
- […]
- 9:27 AM Ticket #2742 (Problem restoring nucleotides in sessions) created by
- […]
Jan 14, 2020:
- 12:41 PM Ticket #2741 (nicer form for ligand-table selection command, when possible) closed by
- fixed: Now only uses ::name="123" when needed
- 12:08 PM Ticket #2731 (Error in Basic Actions restoring session: invalid atom specifier) closed by
- fixed: Fixed in 8c604053a. Instead of ordering the name …
- 11:01 AM Ticket #2741 (nicer form for ligand-table selection command, when possible) created by
- […]
Jan 13, 2020:
- 7:10 PM Ticket #2740 (Cap colors don't track surface colors) created by
- […]
- 6:29 PM Ticket #2739 (Poor visibility for side view clip planes) created by
- […] sideview.png
- 5:54 PM Ticket #2709 (No bonds for residue UNL (unknown ligand) in 6dhf) closed by
- fixed: Changed code to connect atoms by distance when template (CCD entry) …
- 2:03 PM Ticket #2738 (Make volume mesh_lighting = False keep depth cueing) created by
- Currently mesh lighting false turns off all lighting including depth …
- 1:28 PM Ticket #2733 (Changing lighting in VR: CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce: Looks like a graphics drive problem. The VR created textures where it …
- 1:14 PM Ticket #2737 (Normals reversed for negative contours) closed by
- not a bug: There are Volume options that control these behaviors and there are …
- 12:51 PM Ticket #2734 (Closing tools before session restore: 'MainWindow' object has no ...) closed by
- duplicate
- 6:38 AM Ticket #2737 (Normals reversed for negative contours) created by
- […] wireframe_lighting.jpg
- 6:04 AM Ticket #2736 (all-same-value attribute coloring yields black instead of 'mid' color) created by
- […]
Jan 12, 2020:
- 6:42 AM Ticket #2735 (OpenMM crash running simulation) created by
- […]
- 3:22 AM Ticket #2734 (Closing tools before session restore: 'MainWindow' object has no ...) created by
- […]
Jan 11, 2020:
Jan 10, 2020:
- 2:20 PM Ticket #2732 (BILD arrow shaft juts through arrowhead) closed by
- fixed: That is correct. The cone_geometry() returns a cone centered at the …
- 11:04 AM Ticket #2732 (BILD arrow shaft juts through arrowhead) created by
- […]
- 6:51 AM Ticket #2731 (Error in Basic Actions restoring session: invalid atom specifier) created by
- […]
Jan 9, 2020:
- 3:57 PM Ticket #1390 (Need merged view of help documentation) closed by
- fixed: Make it so vdocs can built using the chimerax-daily build to generate …
- 3:52 PM Ticket #2599 ("select pyrimidine" doesn't select anything) closed by
- not a bug: There are no actual pyrimidines in 1bna (or regular nucleic acids for …
- 2:19 PM Ticket #2730 (Surface recomputation: cannot convert float NaN to integer) closed by
- can't reproduce: This error occurred due to NaN atom coordinates when recomputing a …
Jan 8, 2020:
- 5:25 PM Ticket #2730 (Surface recomputation: cannot convert float NaN to integer) created by
- […]
- 1:25 PM Ticket #2729 (Graphics error after switching users) created by
- […]
- 9:53 AM Ticket #2728 (Clipper: math domain error) created by
- […]
- 1:43 AM Ticket #2727 (Cannot launch on Windows) created by
- […]
Jan 7, 2020:
- 3:55 PM Ticket #2721 (Index out of bounds showing interface contact residues) closed by
- fixed: Fixed. The error resulted from making an interfaces plot and then …
- 2:25 PM Ticket #2726 (Have selection remember ordering) created by
- Selecting 4 atoms with the mouse and then using 'sel' as the atom spec …
- 2:23 PM Ticket #2719 (Graphics problem drawing silhouettes) closed by
- duplicate: Duplicate. Believed fixed about 4 months ago.
- 1:50 PM Ticket #2713 (Clashes: "Include intramolecule" option throws error) closed by
- fixed: Fix available in next build.
- 1:28 PM Ticket #2725 (Problem starting ISOLDE) closed by
- duplicate: Duplicate of #2215.
- 10:49 AM Ticket #2717 (AddH: can't form new hydrogen name) closed by
- nonchimerax: Hi Michael, Glad you were able to resolve the issue yourself. This …
- 10:43 AM Ticket #2716 (User confused about how to show trajectories) closed by
- not a bug
- 7:33 AM Ticket #2725 (Problem starting ISOLDE) created by
- […]
- 1:06 AM Ticket #2722 (Wrong version of ChimeraX for ISOLDE) closed by
- not a bug
Jan 6, 2020:
- 5:35 PM Ticket #2715 (Two H-bond pseudobonds between same atom pair) closed by
- not a bug: This is deliberate. There is one pseudobond for every donor→acceptor …
- 5:00 PM Ticket #2706 (Problem with item chooser) closed by
- duplicate
- 4:59 PM Ticket #2705 (Problem with item chooser) closed by
- duplicate: This was fixed in August.
- 4:59 PM Ticket #2703 ('Ring' object has no attribute '_c_pointer_ref') closed by
- duplicate: This was fixed on Oct 24, 2019. It is a problem with session restore …
- 4:56 PM Ticket #2704 (name 'handlers' is not defined) closed by
- fixed: Hi Tony, Thanks for reporting this bug. It's fixed now and the fix …
- 4:35 PM Ticket #1563 (Various ChimeraX startup switches ineffective in Windows) closed by
- fixed: User accepted fix.
- 4:01 PM DeveloperMeetings edited by
- (diff)
- 4:00 PM WikiStart edited by
- (diff)
- 3:59 PM WikiStart edited by
- (diff)
- 3:56 PM WikiStart edited by
- (diff)
- 3:53 PM Features created by
- 3:45 PM WikiStart edited by
- (diff)
- 3:43 PM WikiStart edited by
- (diff)
- 3:41 PM WikiStart edited by
- (diff)
- 3:32 PM WikiStart edited by
- (diff)
- 3:30 PM WikiStart edited by
- (diff)
- 3:28 PM WikiStart edited by
- (diff)
- 3:21 PM WikiStart edited by
- (diff)
- 12:43 PM Ticket #2724 (Chain-table selection wrong when residue numbering is non-monatonic) created by
- […]
- 11:47 AM Ticket #2723 (Lazy managers) created by
- Would like the ability to start a manager later than ChimeraX startup, …
- 10:47 AM Ticket #2722 (Wrong version of ChimeraX for ISOLDE) created by
- […]
- 5:11 AM Ticket #2721 (Index out of bounds showing interface contact residues) created by
- […] VHL - Cul2 (Core).cxs
Jan 4, 2020:
- 2:26 PM Ticket #2720 (RFE: selector or attribute for standard residues with missing atoms) created by
- It would be useful to be able to quickly identify truncated residues …
- 11:10 AM Ticket #2719 (Graphics problem drawing silhouettes) created by
- […]
Jan 3, 2020:
- 11:45 AM Ticket #2718 (Have "more info..." link result offer link to structure's PDB page) created by
- […]
- 7:15 AM Ticket #2717 (AddH: can't form new hydrogen name) created by
- […]
- 5:02 AM Ticket #2716 (User confused about how to show trajectories) created by
- […]
Jan 2, 2020:
- 7:02 PM Ticket #2715 (Two H-bond pseudobonds between same atom pair) created by
- […]
- 12:41 PM Ticket #2714 (Allow custom option on Open File dialog) created by
- Would like to allow custom options on the Open File dialog for …
- 11:22 AM Ticket #2698 (OpenGL buffer "None" was not deleted before core.graphics.Buffer destroyed) closed by
- duplicate: The OpenGL buffer not deleted warning related to selection were fixed …
- 10:33 AM Ticket #2713 (Clashes: "Include intramolecule" option throws error) created by
- […]
- 9:18 AM Ticket #2712 (A lot of array size mismatches after deletions) created by
- […]
- 8:13 AM Ticket #2711 (Apparently harmless error when building Clipper) created by
- […]
- 6:07 AM Ticket #2710 (Somewhat mysterious warning when building bundles) created by
- […]
- 2:21 AM Ticket #2709 (No bonds for residue UNL (unknown ligand) in 6dhf) created by
- […]
- 2:15 AM Ticket #2708 (AddH: 5ky0: list index out of range while finding roomiest) created by
- […]
Dec 31, 2019:
- 4:15 PM Ticket #2707 (Problem showing Toolbar help: failed to load external entity) created by
- […]
- 11:02 AM Ticket #2706 (Problem with item chooser) created by
- […]
- 10:54 AM Ticket #2705 (Problem with item chooser) created by
- […]
Dec 30, 2019:
Dec 28, 2019:
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