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#2767 closed defect (can't reproduce)
Crash in free_keys_object/subtype_dealloc
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.92 (2020-01-22)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [1056]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.92.0 (0.92.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [1056]
User ID: 501
Date/Time: 2020-01-22 22:59:25.462 -0500
OS Version: Mac OS X 10.14.6 (18G2022)
Report Version: 12
Anonymous UUID: 6C4C6B0E-C989-1A65-7FB0-AEBE151C3E75
Sleep/Wake UUID: FFB59A42-0842-4A58-9042-09A144E509C2
Time Awake Since Boot: 6100 seconds
Time Since Wake: 3000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000012506dd40
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x12506dd40:
MALLOC_LARGE 0000000125002000-0000000125015000 [ 76K] rw-/rwx SM=PRV
-->
mapped file 0000000125095000-00000001250d6000 [ 260K] rw-/rw- SM=COW Object_id=c05ba501
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff61e0f2c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff61ecabf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff61d2cd8a raise + 26
3 libsystem_platform.dylib 0x00007fff61ebfb5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000103034f48 subtype_dealloc + 408
6 org.python.python 0x00000001030155c9 free_keys_object + 137
7 org.python.python 0x0000000103017cd8 dict_dealloc + 200
8 org.python.python 0x0000000103001b46 func_dealloc + 198
9 org.python.python 0x0000000103017c94 dict_dealloc + 132
10 org.python.python 0x0000000103035264 subtype_dealloc + 1204
11 org.python.python 0x000000010302c2d0 set_clear_internal + 528
12 org.python.python 0x000000010302f4c9 set_clear + 9
13 org.python.python 0x0000000102feb0fe _PyMethodDef_RawFastCallKeywords + 798
14 org.python.python 0x0000000102ff0b82 _PyMethodDescr_FastCallKeywords + 82
15 org.python.python 0x00000001030b405b call_function + 763
16 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
17 org.python.python 0x0000000102fea893 function_code_fastcall + 195
18 org.python.python 0x00000001030b4031 call_function + 721
19 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
20 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
21 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
22 org.python.python 0x00000001030b4031 call_function + 721
23 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
24 org.python.python 0x0000000102fea893 function_code_fastcall + 195
25 org.python.python 0x00000001030b4031 call_function + 721
26 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
27 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
28 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
29 org.python.python 0x00000001030b4031 call_function + 721
30 org.python.python 0x00000001030ac67a _PyEval_EvalFrameDefault + 5562
31 org.python.python 0x0000000102fea893 function_code_fastcall + 195
32 org.python.python 0x00000001030b4031 call_function + 721
33 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
34 org.python.python 0x0000000102fea893 function_code_fastcall + 195
35 org.python.python 0x00000001030b4031 call_function + 721
36 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
37 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
38 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
39 org.python.python 0x00000001030b4031 call_function + 721
40 org.python.python 0x00000001030ac660 _PyEval_EvalFrameDefault + 5536
41 org.python.python 0x0000000102ff9228 gen_send_ex + 248
42 org.python.python 0x00000001030a9254 builtin_next + 100
43 org.python.python 0x0000000102feb08e _PyMethodDef_RawFastCallKeywords + 686
44 org.python.python 0x0000000102fea3dc _PyCFunction_FastCallKeywords + 44
45 org.python.python 0x00000001030b3fc9 call_function + 617
46 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
47 org.python.python 0x0000000102fea893 function_code_fastcall + 195
48 org.python.python 0x0000000102feb3b6 _PyObject_Call_Prepend + 150
49 org.python.python 0x0000000102fe9c08 _PyObject_FastCallDict + 360
50 org.python.python 0x00000001030ac3e5 _PyEval_EvalFrameDefault + 4901
51 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
52 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
53 org.python.python 0x00000001030b4031 call_function + 721
54 org.python.python 0x00000001030ac7a9 _PyEval_EvalFrameDefault + 5865
55 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
56 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
57 org.python.python 0x00000001030b4031 call_function + 721
58 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
59 org.python.python 0x0000000102fea893 function_code_fastcall + 195
60 org.python.python 0x00000001030b4031 call_function + 721
61 org.python.python 0x00000001030ac67a _PyEval_EvalFrameDefault + 5562
62 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
63 org.python.python 0x0000000102fe9e72 _PyFunction_FastCallDict + 450
64 QtCore.so 0x00000001111e5f17 PyQtSlot::call(_object*, _object*) const + 39
65 QtCore.so 0x00000001111e5e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
66 QtCore.so 0x00000001111e6925 PyQtSlotProxy::unislot(void**) + 85
67 QtCore.so 0x00000001111e689a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
68 QtCore 0x0000000110ccd5cd QMetaObject::activate(QObject*, int, int, void**) + 1773
69 QtWidgets 0x000000010ffc9185 QAction::activate(QAction::ActionEvent) + 309
70 QtCore 0x0000000110cc61d1 QObject::event(QEvent*) + 753
71 QtWidgets.so 0x000000010fba2810 sipQAction::event(QEvent*) + 192
72 QtWidgets 0x000000010ffd276d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
73 QtWidgets 0x000000010ffd3b72 QApplication::notify(QObject*, QEvent*) + 594
74 QtWidgets.so 0x000000010fba13ca sipQApplication::notify(QObject*, QEvent*) + 234
75 QtCore 0x0000000110c9c7c4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
76 QtCore 0x0000000110c9d9fe QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 878
77 libqcocoa.dylib 0x000000011a84cd69 0x11a817000 + 220521
78 libqcocoa.dylib 0x000000011a84d4d8 0x11a817000 + 222424
79 com.apple.CoreFoundation 0x00007fff35d69e33 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
80 com.apple.CoreFoundation 0x00007fff35d69dd9 __CFRunLoopDoSource0 + 108
81 com.apple.CoreFoundation 0x00007fff35d4d79b __CFRunLoopDoSources0 + 195
82 com.apple.CoreFoundation 0x00007fff35d4cd65 __CFRunLoopRun + 1189
83 com.apple.CoreFoundation 0x00007fff35d4c66e CFRunLoopRunSpecific + 455
84 com.apple.HIToolbox 0x00007fff34fab1ab RunCurrentEventLoopInMode + 292
85 com.apple.HIToolbox 0x00007fff34faaded ReceiveNextEventCommon + 355
86 com.apple.HIToolbox 0x00007fff34faac76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
87 com.apple.AppKit 0x00007fff3334277d _DPSNextEvent + 1135
88 com.apple.AppKit 0x00007fff3334146b -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
89 com.apple.AppKit 0x00007fff3333b588 -[NSApplication run] + 699
90 libqcocoa.dylib 0x000000011a84c253 0x11a817000 + 217683
91 QtCore 0x0000000110c97ddf QEventLoop::exec(QFlags) + 431
92 QtCore 0x0000000110c9cdd2 QCoreApplication::exec() + 130
93 QtWidgets.so 0x000000010fc907d2 meth_QApplication_exec_(_object*, _object*) + 82
94 org.python.python 0x0000000102feaedb _PyMethodDef_RawFastCallKeywords + 251
95 org.python.python 0x0000000102fea3dc _PyCFunction_FastCallKeywords + 44
96 org.python.python 0x00000001030b3fc9 call_function + 617
97 org.python.python 0x00000001030ac67a _PyEval_EvalFrameDefault + 5562
98 org.python.python 0x0000000102fea893 function_code_fastcall + 195
99 org.python.python 0x00000001030b4031 call_function + 721
100 org.python.python 0x00000001030ac67a _PyEval_EvalFrameDefault + 5562
101 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
102 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
103 org.python.python 0x00000001030b4031 call_function + 721
104 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
105 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
106 org.python.python 0x00000001030ab020 PyEval_EvalCode + 48
107 org.python.python 0x00000001030a8683 builtin_exec + 563
108 org.python.python 0x0000000102feb08e _PyMethodDef_RawFastCallKeywords + 686
109 org.python.python 0x0000000102fea3dc _PyCFunction_FastCallKeywords + 44
110 org.python.python 0x00000001030b3fc9 call_function + 617
111 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
112 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
113 org.python.python 0x0000000102fea396 _PyFunction_FastCallKeywords + 230
114 org.python.python 0x00000001030b4031 call_function + 721
115 org.python.python 0x00000001030ac70b _PyEval_EvalFrameDefault + 5707
116 org.python.python 0x00000001030b4c84 _PyEval_EvalCodeWithName + 2788
117 org.python.python 0x0000000102fe9e72 _PyFunction_FastCallDict + 450
118 org.python.python 0x00000001031090e3 pymain_run_module + 147
119 org.python.python 0x00000001031081a1 pymain_main + 5041
120 org.python.python 0x0000000103106de3 Py_Main + 51
121 edu.ucsf.cgl.ChimeraX 0x0000000102fc3dc8 main + 120
122 libdyld.dylib 0x00007fff61cd43d5 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff35d4d99e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff35d4cf0c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff35d4c66e CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff3334a4a2 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a1b11d 0x1118bc000 + 34992413
5 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff61e0f78a kevent + 10
1 QtWebEngineCore 0x0000000113d28a59 0x1118bc000 + 38193753
2 QtWebEngineCore 0x0000000113d25d6d 0x1118bc000 + 38182253
3 QtWebEngineCore 0x0000000113adcd8c 0x1118bc000 + 35786124
4 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
5 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
6 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
7 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff61e0f78a kevent + 10
1 QtWebEngineCore 0x0000000113d28a59 0x1118bc000 + 38193753
2 QtWebEngineCore 0x0000000113d25d6d 0x1118bc000 + 38182253
3 QtWebEngineCore 0x0000000113adcd74 0x1118bc000 + 35786100
4 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
5 QtWebEngineCore 0x0000000113a85b34 0x1118bc000 + 35429172
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 5:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f384 0x1118bc000 + 35402628
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 6:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f384 0x1118bc000 + 35402628
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 7:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f2f4 0x1118bc000 + 35402484
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 8:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f2f4 0x1118bc000 + 35402484
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff61e0f78a kevent + 10
1 QtWebEngineCore 0x0000000113d28a59 0x1118bc000 + 38193753
2 QtWebEngineCore 0x0000000113d25d6d 0x1118bc000 + 38182253
3 QtWebEngineCore 0x0000000113adcd74 0x1118bc000 + 35786100
4 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
5 QtWebEngineCore 0x00000001133aa5d4 0x1118bc000 + 28239316
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 10:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a7edda 0x1118bc000 + 35401178
5 QtWebEngineCore 0x0000000113a7f47f 0x1118bc000 + 35402879
6 QtWebEngineCore 0x0000000113a7f324 0x1118bc000 + 35402532
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 11:: CompositorTileWorker1/72963
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 QtWebEngineCore 0x0000000113ad5058 0x1118bc000 + 35754072
3 QtWebEngineCore 0x0000000114a5d658 0x1118bc000 + 52041304
4 QtWebEngineCore 0x0000000113a95754 0x1118bc000 + 35493716
5 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
6 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 12:: AudioThread
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a1b11d 0x1118bc000 + 34992413
5 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a1b11d 0x1118bc000 + 34992413
5 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a1b112 0x1118bc000 + 34992402
4 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
5 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
6 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
7 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff61e0f78a kevent + 10
1 QtWebEngineCore 0x0000000113d28a59 0x1118bc000 + 38193753
2 QtWebEngineCore 0x0000000113d25d6d 0x1118bc000 + 38182253
3 QtWebEngineCore 0x0000000113adcd8c 0x1118bc000 + 35786124
4 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
5 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
6 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
7 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 16:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a7edda 0x1118bc000 + 35401178
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f3e4 0x1118bc000 + 35402724
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 17:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 QtCore 0x0000000110addc9b 0x110ab3000 + 175259
3 QtCore 0x0000000110addbfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x00000001101fd7a2 0x10ffc2000 + 2340770
5 QtCore 0x0000000110ad54a3 0x110ab3000 + 140451
6 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a672ef 0x1118bc000 + 35304175
4 QtWebEngineCore 0x0000000113a1b11d 0x1118bc000 + 34992413
5 QtWebEngineCore 0x0000000113a44145 0x1118bc000 + 35160389
6 QtWebEngineCore 0x0000000113a96a7c 0x1118bc000 + 35498620
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x0000000104a7cc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x0000000104a7cc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x0000000104a7cc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 22:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff61e0c866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff61ecb56e _pthread_cond_wait + 722
2 QtCore 0x0000000110addc9b 0x110ab3000 + 175259
3 QtCore 0x0000000110addbfc QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x00000001101fd7a2 0x10ffc2000 + 2340770
5 QtCore 0x0000000110ad54a3 0x110ab3000 + 140451
6 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 23:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f384 0x1118bc000 + 35402628
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 24:
0 libsystem_pthread.dylib 0x00007fff61ec73f0 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff61ec73f0 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff61ec73f0 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff61ec73f0 start_wqthread + 0
Thread 28:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f71b 0x1118bc000 + 35403547
6 QtWebEngineCore 0x0000000113a7f384 0x1118bc000 + 35402628
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 29:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff61e0921a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff61e09768 mach_msg + 60
2 QtWebEngineCore 0x0000000113a673ed 0x1118bc000 + 35304429
3 QtWebEngineCore 0x0000000113a674e1 0x1118bc000 + 35304673
4 QtWebEngineCore 0x0000000113a7ede8 0x1118bc000 + 35401192
5 QtWebEngineCore 0x0000000113a7f47f 0x1118bc000 + 35402879
6 QtWebEngineCore 0x0000000113a7f384 0x1118bc000 + 35402628
7 QtWebEngineCore 0x0000000113ad67c7 0x1118bc000 + 35760071
8 libsystem_pthread.dylib 0x00007fff61ec82eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff61ecb249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff61ec740d thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000103be95c0 rcx: 0x0000000103439a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x0000000103439a80 rsp: 0x0000000103439a48
r8: 0x0000000103439f48 r9: 0x2368f565524075a6 r10: 0x0000000103be966c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x000000012506dd50 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff61e0f2c2 rfl: 0x0000000000000286 cr2: 0x0000000103213124
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x103d98000 - 0x103d99ff7 +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so
0x103ddd000 - 0x103debffb +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
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0x103e7a000 - 0x103eb2ff3 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x103ed1000 - 0x103efcfff +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so
0x103f0f000 - 0x103f10ff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
0x103f94000 - 0x103f95fff +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so
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0x103f9d000 - 0x103f9efff +libappdirs.dylib (0) /Applications/ChimeraX_Daily.app/Contents/lib/libappdirs.dylib
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0x1040b7000 - 0x1040c9fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so
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0x7fff61b79000 - 0x7fff61bfdfc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib
0x7fff61c84000 - 0x7fff61cbdff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff61cbe000 - 0x7fff61ceaff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff61ceb000 - 0x7fff61cebffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff61cec000 - 0x7fff61cf8ff3 libkxld.dylib (4903.278.19) /usr/lib/system/libkxld.dylib
0x7fff61cf9000 - 0x7fff61cf9ff7 liblaunch.dylib (1336.261.2) /usr/lib/system/liblaunch.dylib
0x7fff61cfa000 - 0x7fff61cfffff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff61d00000 - 0x7fff61d02ff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib
0x7fff61d03000 - 0x7fff61d04ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff61d05000 - 0x7fff61d1cff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff61d1d000 - 0x7fff61d1dff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff61d1e000 - 0x7fff61da5fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
0x7fff61da6000 - 0x7fff61da9ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff61daa000 - 0x7fff61dadff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff61dae000 - 0x7fff61db4fff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff61db5000 - 0x7fff61dbbffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff61dbc000 - 0x7fff61e07ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff61e08000 - 0x7fff61e30ff7 libsystem_kernel.dylib (4903.278.19) /usr/lib/system/libsystem_kernel.dylib
0x7fff61e31000 - 0x7fff61e7cff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff61e7d000 - 0x7fff61ea7fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff61ea8000 - 0x7fff61eb2ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff61eb3000 - 0x7fff61ebafff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff61ebb000 - 0x7fff61ec4fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff61ec5000 - 0x7fff61ecfff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff61ed0000 - 0x7fff61ed3ff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff61ed4000 - 0x7fff61ed6ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff61ed7000 - 0x7fff61edeff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff61edf000 - 0x7fff61ef4ff7 libsystem_trace.dylib (906.260.2) /usr/lib/system/libsystem_trace.dylib
0x7fff61ef6000 - 0x7fff61efbffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff61efc000 - 0x7fff61f2bfff libxpc.dylib (1336.261.2) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 6
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 2914
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=699.9M resident=0K(0%) swapped_out_or_unallocated=699.9M(100%)
Writable regions: Total=2.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.7G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 36.4M 8
CG image 516K 27
CoreAnimation 5908K 41
CoreGraphics 8K 1
CoreImage 188K 32
CoreUI image data 4012K 44
CoreUI image file 560K 6
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 2.0G 581
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 116K 29
Stack 165.2M 30
Stack Guard 56.0M 1
VM_ALLOCATE 220.0M 298
__DATA 49.4M 504
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 241.5M 126
__TEXT 458.3M 479
__UNICODE 564K 1
mapped file 95.8M 76
shared memory 716K 19
=========== ======= =======
TOTAL 3.6G 2330
TOTAL, minus reserved VM space 3.4G 2330
Log:
UCSF ChimeraX version: 0.92 (2020-01-22)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.10.14
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.
Change History (7)
comment:1 by , 6 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in free_keys_object/subtype_dealloc |
comment:2 by , 6 years ago
| Status: | accepted → feedback |
|---|
follow-up: 3 comment:3 by , 6 years ago
Hi Eric, I was using the tool ‘Molecular Dynamics Viewer’ when the chimera had crash. But now still working normally.
comment:4 by , 6 years ago
Do you remember if you were reading the trajectory, playing it, or doing something else when the crash happened?
--Eric
comment:6 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | feedback → closed |
I ran through a "trajectory" (NMR ensemble) with surface on for an hour with no problem, so there is some other needed condition for this crash, and we don't know what it is...
follow-up: 7 comment:7 by , 6 years ago
Got it. For now I didn't had the problem yet or anyone, thanks On Mon, Jan 27, 2020, 18:42 ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
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Hi Victor,
--Eric