Opened 6 years ago
Closed 6 years ago
#2707 closed defect (can't reproduce)
Problem showing Toolbar help: failed to load external entity
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Help System | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-12-23) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-12-23) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > RSR10_model_fit_into_20191115_sharpened_map_1.3295angpix_for_figures.cxs Summary of feedback from opening RSR10_model_fit_into_20191115_sharpened_map_1.3295angpix_for_figures.cxs --- warning | Unable to restore "SchemesManager" object opened ChimeraX session > show #!2 models > hide #!2 models > windowsize 800 1200 > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > hide #!1 models > show #!2 models > show cartoons > hide atoms > select /I:186 21 atoms, 23 bonds, 1 model selected > select /J:14 20 atoms, 21 bonds, 1 model selected > select up 8077 atoms, 9060 bonds, 1 model selected > show sel atoms > hide sel cartoons > select clear > show #!1 models > volume #1 level 6.24 > select #1 2 models selected > ~select #1 Nothing selected > select #2 18364 atoms, 19524 bonds, 2 pseudobonds, 2 models selected > ~select #2 Nothing selected > select #2 18364 atoms, 19524 bonds, 2 pseudobonds, 2 models selected > ~select #2 Nothing selected > select #2 18364 atoms, 19524 bonds, 2 pseudobonds, 2 models selected > ~select #2 Nothing selected > select #1 2 models selected > ~select #1 Nothing selected > select #2/U 607 atoms, 616 bonds, 1 model selected > view sel > ~select Nothing selected > hide #!1 models > nucleotides fill > style nucleic stick Changed 8077 atom styles > ui favorite true Toolbar > help help:user/tools/Toolbar.html Traceback (most recent call last): File "/Users/zhoub2/Applications/ChimeraX-0.91.app/Contents/lib/python3.7/site- packages/chimerax/ui/widgets/htmlview.py", line 261, in interceptRequest self._callback(info) File "/Users/zhoub2/Applications/ChimeraX-0.91.app/Contents/lib/python3.7/site- packages/chimerax/ui/widgets/htmlview.py", line 150, in intercept return self._intercept_cb(request_info, *args) File "/Users/zhoub2/Applications/ChimeraX-0.91.app/Contents/lib/python3.7/site- packages/chimerax/help_viewer/tool.py", line 95, in link_clicked new_path = _generate_index(path, self.session.logger) File "/Users/zhoub2/Applications/ChimeraX-0.91.app/Contents/lib/python3.7/site- packages/chimerax/help_viewer/cmd.py", line 121, in _generate_index html = lxml.html.parse(source) File "/Users/zhoub2/Applications/ChimeraX-0.91.app/Contents/lib/python3.7/site- packages/lxml/html/__init__.py", line 939, in parse return etree.parse(filename_or_url, parser, base_url=base_url, **kw) File "src/lxml/etree.pyx", line 3467, in lxml.etree.parse File "src/lxml/parser.pxi", line 1839, in lxml.etree._parseDocument File "src/lxml/parser.pxi", line 1865, in lxml.etree._parseDocumentFromURL File "src/lxml/parser.pxi", line 1769, in lxml.etree._parseDocFromFile File "src/lxml/parser.pxi", line 1163, in lxml.etree._BaseParser._parseDocFromFile File "src/lxml/parser.pxi", line 601, in lxml.etree._ParserContext._handleParseResultDoc File "src/lxml/parser.pxi", line 711, in lxml.etree._handleParseResult File "src/lxml/parser.pxi", line 638, in lxml.etree._raiseParseError OSError: Error reading file '/share/docs/user/index.html': failed to load external entity "/share/docs/user/index.html" OSError: Error reading file '/share/docs/user/index.html': failed to load external entity "/share/docs/user/index.html" File "src/lxml/parser.pxi", line 638, in lxml.etree._raiseParseError See log for complete Python traceback. OpenGL version: 4.1 ATI-2.11.21 OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (4)
comment:1 by , 6 years ago
| Component: | Unassigned → Help System |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Problem showing Toolbar help: failed to load external entity |
comment:2 by , 6 years ago
comment:4 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
Whoops :-). Can't reproduce this bug.
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How easy is this for you to reproduce? Does it matter if you type:
or use the context menu over the toolbar to bring its help?