Opened 6 years ago
Closed 6 years ago
#2741 closed enhancement (fixed)
nicer form for ligand-table selection command, when possible
Reported by: | Owned by: | ||
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | General Controls | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Darwin-19.2.0-x86_64-i386-64bit ChimeraX Version: 0.92 (2020-01-11) Description Selecting ADP in Log ligand table of 6n2y issues command select ::name="ADP" Would be better to issue the command a user would actually type select :ADP and only use the more complicated syntax if necessary (for an all numeric residue name). Log: UCSF ChimeraX version: 0.92 (2020-01-11) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/goddard/ucsf/presentations/stanford-jul2019/tutorial2.html Opened tutorial2.html > open 6n2y 6n2y title: Bacillus PS3 ATP synthase class 1 [more info...] Chain information for 6n2y #1 --- Chain | Description A B C | ATP synthase subunit α D E F | ATP synthase subunit β G | ATP synthase γ chain H | ATP synthase ε chain I | ATP synthase subunit δ a | ATP synthase subunit a b1 | ATP synthase subunit b b2 | ATP synthase subunit b c0 c1 c2 c3 c4 c5 c6 c7 c8 c9 | ATP synthase subunit c Non-standard residues in 6n2y #1 --- ADP — adenosine-5'-diphosphate ATP — adenosine-5'-triphosphate MG — magnesium ion PO4 — phosphate ion > select /A:2-501 3827 atoms, 3888 bonds, 1 model selected > select clear > sequence chain #1/A#1/B#1/C Alignment identifier is 1 > sequence chain #1/A Alignment identifier is 1.A > log metadata #1 Metadata for 6n2y #1 --- Title | Bacillus PS3 ATP synthase class 1 Citation | Guo, H., Suzuki, T., Rubinstein, J.L. (2019). Structure of a bacterial ATP synthase. Elife, 8. PMID: 30724163. DOI: 10.7554/eLife.43128 Non-standard residues | ADP — adenosine-5'-diphosphate ATP — adenosine-5'-triphosphate MG — magnesium ion PO4 — phosphate ion Gene source | Bacillus sp. (strain PS3) Experimental method | Electron microscopy Resolution | 3.0Å > ui dockable true "Help Viewer" > show cartoons > show cartoons > hide atoms > show ligand > hide ligand > select ::name="ADP" 27 atoms, 29 bonds, 1 model selected OpenGL version: 4.1 ATI-3.4.19 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 6 years ago
Component: | Unassigned → General Controls |
---|---|
Description: | modified (diff) |
Platform: | → all |
Project: | → ChimeraX |
Summary: | ChimeraX bug report submission → nicer form for ligand-table selection command, when possible |
Type: | defect → enhancement |
comment:2 by , 6 years ago
Resolution: | → fixed |
---|---|
Status: | new → closed |
Note:
See TracTickets
for help on using tickets.
Now only uses ::name="123" when needed