Opened 6 years ago
Closed 6 years ago
#2763 closed defect (fixed)
Setting clip_cap property: 'Drawing' object has no attribute 'session'
| Reported by: | Tristan Croll | Owned by: | Tom Goddard |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-3.10.0-1062.9.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core
ChimeraX Version: 0.92 (2020-01-11)
Description
Experimenting with the `clip_cap` property. Seems this only works for subclasses of `Model`?
Log:
Startup Messages
---
warning | 'clip' is a prefix of an existing command 'clipper'
UCSF ChimeraX version: 0.92 (2020-01-11)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3io0 format mmCIF fromDatabase pdb structureFactors true
Summary of feedback from opening 3io0 fetched from pdb
---
warning | WARNING: multiple experimental reflection datasets found:
F_meas_au, F_meas_sigma_au,
pdbx_F_plus, pdbx_F_plus_sigma, pdbx_F_minus, pdbx_F_minus_sigma,
pdbx_anom_difference, pdbx_anom_difference_sigma,
intensity_meas, intensity_sigma,
pdbx_I_plus, pdbx_I_plus_sigma, pdbx_I_minus, pdbx_I_minus_sigma
Automatically choosing "intensity_meas, intensity_sigma".
notes | Resolution: 3.003
Reflection data provided as intensities. Performing French & Wilson scaling to
convert to amplitudes...
3io0 title:
Crystal structure of EtuB from Clostridium kluyveri [more info...]
Chain information for 3io0
---
Chain | Description
1.1/A | EtuB protein
3io0 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> toolshed show Shell
/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/IPython/core/history.py:226: UserWarning: IPython History requires
SQLite, your history will not be saved
warn("IPython History requires SQLite, your history will not be saved")
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 133, in _redraw_timer_callback
drew = self.draw_new_frame()
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 62, in draw_new_frame
surface.update_clip_caps(view)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps
subdivision = settings.clipping_cap_subdivision)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 43, in show_surface_clip_caps
set_cap_drawing_geometry(d, p.name, varray, narray, tarray)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 172, in set_cap_drawing_geometry
cm = new_cap(d.session, d, cap_name)
AttributeError: 'Drawing' object has no attribute 'session'
AttributeError: 'Drawing' object has no attribute 'session'
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 172, in set_cap_drawing_geometry
cm = new_cap(d.session, d, cap_name)
See log for complete Python traceback.
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 133, in _redraw_timer_callback
drew = self.draw_new_frame()
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 62, in draw_new_frame
surface.update_clip_caps(view)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 27, in update_clip_caps
subdivision = settings.clipping_cap_subdivision)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 43, in show_surface_clip_caps
set_cap_drawing_geometry(d, p.name, varray, narray, tarray)
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 172, in set_cap_drawing_geometry
cm = new_cap(d.session, d, cap_name)
AttributeError: 'Drawing' object has no attribute 'session'
AttributeError: 'Drawing' object has no attribute 'session'
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/surface/cap.py", line 172, in set_cap_drawing_geometry
cm = new_cap(d.session, d, cap_name)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 440.33.01
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Setting clip_cap property: 'Drawing' object has no attribute 'session' |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
Clip caps used to work on a Drawing that is not a Model, but some code change broke that. Apparently all clipped Drawings currently in use are Models. But I've fixed it so Drawings can have clip caps.