![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#2754 closed defect (can't reproduce)
(corrupted stack?) crash
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.2.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-09-10)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [14831]
Path: /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [14831]
User ID: 501
Date/Time: 2020-01-17 01:08:38.120 -0500
OS Version: Mac OS X 10.15.2 (19C57)
Report Version: 12
Anonymous UUID: 4F871D3C-1294-7F9F-A891-82A884BB9E95
Sleep/Wake UUID: FAC66163-CD0F-4319-ABEE-1B1987B85D90
Time Awake Since Boot: 240000 seconds
Time Since Wake: 2600 seconds
System Integrity Protection: enabled
Crashed Thread: 0
Exception Type: EXC_BAD_ACCESS (SIGILL)
Exception Codes: KERN_MEMORY_ERROR at 0x0000000107a61140
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Illegal instruction: 4
Termination Reason: Namespace SIGNAL, Code 0x4
Terminating Process: ChimeraX [14831]
VM Regions Near 0x107a61140:
MALLOC metadata 00000001078d8000-00000001078d9000 [ 4K] r--/rwx SM=PRV
--> mapped file 00000001078d9000-0000000107abf000 [ 1944K] r-x/rwx SM=COW Object_id=97316dc9
mapped file 0000000107abf000-0000000107b24000 [ 404K] rw-/rwx SM=COW Object_id=947556c9
Thread 0 Crashed:
0 ??? 0x0000000107a61140 0 + 4423291200
1 ChimeraX 000000000000000000 0 + 0
2 ChimeraX 000000000000000000 0 + 0
3 ChimeraX 000000000000000000 0 + 0
4 ChimeraX 000000000000000000 0 + 0
5 ChimeraX 000000000000000000 0 + 0
6 ChimeraX 000000000000000000 0 + 0
7 ChimeraX 000000000000000000 0 + 0
8 ChimeraX 000000000000000000 0 + 0
9 ChimeraX 000000000000000000 0 + 0
10 ChimeraX 000000000000000000 0 + 0
11 ChimeraX 000000000000000000 0 + 0
12 ChimeraX 000000000000000000 0 + 0
13 ??? 0x4004280040042800 0 + 4612855899873355776
14 ??? 0x0000009200000091 0 + 627065225361
15 ??? 0x000000c6000000c5 0 + 850403524805
16 ??? 0x000009c8000009c7 0 + 10754598111687
17 ChimeraX 000000000000000000 0 + 0
18 ChimeraX 000000000000000000 0 + 0
19 ??? 0x0000130e000012f0 0 + 20950850474736
20 ??? 0x0000000107c36cbc 0 + 4425215164
21 ??? 0x0000000080042800 0 + 2147756032
22 ??? 0x00010af600010aeb 0 + 293526655011563
23 ChimeraX 000000000000000000 0 + 0
24 ??? 0x0000000000040800 0 + 264192
25 ??? 0x0001ee620001ee61 0 + 543579651042913
26 ChimeraX 000000000000000000 0 + 0
27 ??? 0x0000000000000175 0 + 373
28 ??? 0x000001e4000001e4 0 + 2078764171748
29 ChimeraX 000000000000000000 0 + 0
30 ??? 0x00000000000004d1 0 + 1233
31 ??? 0x00001e3600001e36 0 + 33217277074998
32 ChimeraX 000000000000000000 0 + 0
33 ??? 0x0000000000001fe0 0 + 8160
34 ??? 0x0000015b0000015b 0 + 1490353652059
35 ChimeraX 000000000000000000 0 + 0
36 ??? 0x0000000000000388 0 + 904
37 ??? 0x000004a3000004a3 0 + 5098126181539
38 ChimeraX 000000000000000000 0 + 0
39 ??? 0x0000000000001e7a 0 + 7802
40 ??? 0x00001ef500001ef5 0 + 34037615828725
41 ??? 0x4004890040041900 0 + 4612962552501246208
42 ??? 0x4004280040042800 0 + 4612855899873355776
43 ??? 0x4004890040041900 0 + 4612962552501246208
44 ??? 0x4004080040040800 0 + 4612820715501258752
45 ??? 0x4024080040240800 0 + 4621827914758096896
46 ??? 0x4024080040240800 0 + 4621827914758096896
47 ??? 0x4004080040040800 0 + 4612820715501258752
48 ??? 0x4004190040048900 0 + 4612839407198963968
49 ??? 0x4004280040042800 0 + 4612855899873355776
50 ??? 0x4004280040042800 0 + 4612855899873355776
51 ??? 0x4004280040042800 0 + 4612855899873355776
52 ??? 0x8004080080042800 0 + 9224506735002396672
53 ??? 0x8014080080140800 0 + 9229010334630807552
54 ??? 0x4004000040040000 0 + 4612811919408234496
55 ??? 0x4004000040040000 0 + 4612811919408234496
56 ??? 0x4004000040040000 0 + 4612811919408234496
57 ??? 0x4004000040040000 0 + 4612811919408234496
58 ??? 0x4004000040040000 0 + 4612811919408234496
59 ??? 0x4004000040040000 0 + 4612811919408234496
60 ??? 0x4004080040040800 0 + 4612820715501258752
61 ??? 0x4004080040040800 0 + 4612820715501258752
62 ??? 0x4004080040040800 0 + 4612820715501258752
63 ??? 0x4004080040040800 0 + 4612820715501258752
64 ??? 0x4004080040040800 0 + 4612820715501258752
65 ??? 0x4004080040040800 0 + 4612820715501258752
66 ??? 0x4004080040040800 0 + 4612820715501258752
67 ??? 0x4004080040040800 0 + 4612820715501258752
68 ??? 0x4004080040040800 0 + 4612820715501258752
69 ??? 0x4004080040040800 0 + 4612820715501258752
70 ??? 0x4004080040040800 0 + 4612820715501258752
71 ??? 0x4004080040040800 0 + 4612820715501258752
72 ??? 0x4004080040040800 0 + 4612820715501258752
73 ??? 0x4004080040040800 0 + 4612820715501258752
74 ??? 0x4004080040040800 0 + 4612820715501258752
75 ??? 0x4004080040040800 0 + 4612820715501258752
76 ??? 0x4004080040040800 0 + 4612820715501258752
77 ??? 0x4004080040040800 0 + 4612820715501258752
78 ??? 0x4004080040040800 0 + 4612820715501258752
79 ??? 0x800c0800800c0800 0 + 9226758534816598016
80 ??? 0x4004080040040800 0 + 4612820715501258752
81 ??? 0x4004080040040800 0 + 4612820715501258752
82 ??? 0x2004080020040800 0 + 2306977705750693888
83 ??? 0x4004190040041900 0 + 4612839407198935296
84 ??? 0x4004890040048900 0 + 4612962552501274880
85 ??? 0x4004080040040800 0 + 4612820715501258752
86 ??? 0x8004280080042800 0 + 9224541919374485504
87 ??? 0x8004280080042800 0 + 9224541919374485504
88 ??? 0x8004280080042800 0 + 9224541919374485504
Thread 1:
0 ??? 0x00007fff700eece6 0 + 140735073414374
1 ??? 0x00000001091c8c0b 0 + 4447833099
2 ??? 0x00007fff701afe65 0 + 140735074205285
3 ??? 0x00007fff701ab83b 0 + 140735074187323
Thread 2:: com.apple.NSEventThread
0 ??? 0x00007fff700ec25a 0 + 140735073403482
1 ??? 0x00007fff700ec5d0 0 + 140735073404368
2 ??? 0x00007fff38950d0b 0 + 140734142680331
3 ??? 0x00007fff3894f8e7 0 + 140734142675175
4 ??? 0x00007fff3894ebd3 0 + 140734142671827
5 ??? 0x00007fff35cb9a72 0 + 140734095923826
6 ??? 0x00007fff701afe65 0 + 140735074205285
7 ??? 0x00007fff701ab83b 0 + 140735074187323
Thread 3:
0 ??? 0x00007fff701ab818 0 + 140735074187288
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000107a61140 rbx: 0x0000000107c26660 rcx: 0x0000000107c265f8 rdx: 0x0000000107c26660
rdi: 0x000000000000000a rsi: 0x0000000107c265f8 rbp: 0x0000000107c261d0 rsp: 0x0000000107c261c8
r8: 0x0000000107c26660 r9: 0x226e19b710e32dc2 r10: 0x000060000094a830 r11: 0x000060000094a828
r12: 0x226e19b710e32dc2 r13: 0x0000000000000040 r14: 0x0000000000000000 r15: 0x0000000112effd60
rip: 0x0000000107a61140 rfl: 0x0000000000010202 cr2: 0x0000000107a61140
Logical CPU: 2
Error Code: 0x00000014 (no mapping for user instruction write)
Trap Number: 14
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
0x11358e000 - 0x11361ecb7 dyld (733.8) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 168235
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=804K resident=0K(0%) swapped_out_or_unallocated=804K(100%)
Writable regions: Total=670.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=670.4M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 2192K 4
CG image 24K 2
CoreAnimation 32K 7
CoreGraphics 8K 1
CoreImage 16K 4
CoreServices 252K 1
CoreUI image data 516K 7
Foundation 4K 1
IOAccelerator 12K 1
IOSurface 4K 1
Kernel Alloc Once 8K 1
MALLOC 208.0M 88
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
STACK GUARD 12K 3
Stack 9752K 4
Stack Guard 56.0M 1
VM_ALLOCATE 31.6M 143
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 580K 1
dylib 1692K 25
dylib (reserved) 8K 2 reserved VM address space (unallocated)
mapped file 290.8M 341
shared memory 632K 14
=========== ======= =======
TOTAL 1.0G 671
TOTAL, minus reserved VM space 602.9M 671
Log:
UCSF ChimeraX version: 0.91 (2019-09-10)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.3.9
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → (corrupted stack?) crash |
comment:2 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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