Opened 6 years ago
Closed 6 years ago
#2778 closed defect (fixed)
Picking segmented clusters: not enough values to unpack
Reported by: | Owned by: | Tom Goddard | |
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Priority: | normal | Milestone: | |
Component: | Volume Data | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.92 (2020-01-24) Description Trying to select several segmented clusters using ctrl + mouse drag, I get this error message every time, although the clusters in the area are selected. I have to do a (view orient; view initial;) command to reset and be able to select something else. Log: UCSF ChimeraX version: 0.92 (2020-01-24) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "/Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 > (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs" Summary of feedback from opening /Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs --- note | Showing Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg - 35 regions, 35 surfaces opened ChimeraX session > volume #3 region 653,0,0,769,290,299 > volume #4 region 570,0,0,844,290,299 > ui mousemode rightMode "delete markers" > marker delete #5:1 > marker delete #5:4 > marker delete #5:5 > marker delete #5:2 > save session "/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi005.cxs" > hide #!4 models > hide #!3 models > show #!3 models > hide #!2 models > show #!2 models Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 477, in <lambda> gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_up") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 475, in <lambda> gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_down") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 477, in <lambda> gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_up") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > view orient > view initial Drag select of 332, 2406 of 10460 triangles > select #2 141 models selected > ~select #2 Nothing selected Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 477, in <lambda> gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_up") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 475, in <lambda> gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_down") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 477, in <lambda> gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_up") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > view orient > view initial Drag select of Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 477, in <lambda> gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_up") File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 192, in mouse_drag_select select_pick(session, pick, mode) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.10.14 OpenGL renderer: Intel(R) Iris(TM) Graphics 550 OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 6 years ago
Component: | Unassigned → Volume Data |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Picking segmented clusters: not enough values to unpack |
comment:2 by , 6 years ago
Resolution: | → fixed |
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Status: | assigned → closed |
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Fixed.
Code that was logging what was picked in a drag select was trying to combine items like 3 atoms, 7 atoms, 8 atoms into "18 atoms" and assumed that the descriptions could be parsed as a number followed by an name.