![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 31, 2022:
- 1:51 AM Ticket #8245 (H-bonds: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […] stableL28.pdb
Dec 30, 2022:
- 1:42 PM ChangeLog edited by
- (diff)
- 9:13 AM Ticket #8244 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Laura, Thanks for reporting this problem. We believe it is fixed …
- 8:40 AM Ticket #8244 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Dec 29, 2022:
- 5:36 PM Ticket #8170 (Files should use symmetry information if available) closed by
- fixed: Okay, I have added a commit to the still-outstanding pull request to …
- 4:52 PM Ticket #8243 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) closed by
- duplicate: Followup to #8240
- 4:51 PM Ticket #8241 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) closed by
- duplicate: Followup to #8240
- 3:10 PM Ticket #8237 (Restore new session in old ChimeraX) closed by
- limitation
- 2:24 PM Ticket #8243 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 1:51 PM Ticket #8242 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 12:16 PM Ticket #8241 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
- 9:31 AM Ticket #8240 (Re: [EXTERNAL] Re: Issue with installation of ISOLDE on macOS 11.7.2) created by
- […] [[Image(...)]]
Dec 28, 2022:
- 7:14 PM Ticket #8239 (Graphics crash, macOS 10.14.6, NVIDIA GeForce GTX 775M) created by
- […]
- 8:49 AM Ticket #8238 (User-installed bundles interfering with build) created by
- When doing "make install" from top ChimeraX directory: …
Dec 27, 2022:
- 11:25 PM Ticket #8237 (Restore new session in old ChimeraX) created by
- […]
- 8:25 PM Ticket #8230 (Wiggle tool not found after installation) closed by
- limitation: We had several bugs that prevented the Wiggle wheel (.whl file) from …
- 12:42 PM Ticket #8236 (Graphics hardware encountered an error and was reset) created by
- […]
- 11:41 AM Ticket #8226 (Unsupported scale factor (0.000000) detected on Display0) closed by
- limitation: Hi Kelvin, Thanks for that info. This isn't a problem with the …
- 9:50 AM Ticket #8234 (Crash using File→Open on Windows and/or in return statement) closed by
- duplicate: Same problem: upgrade to 1.5!
- 9:45 AM Ticket #8232 (Crash in event loop) closed by
- can't reproduce
- 9:41 AM Ticket #8225 (Wiggle tool not known after installation) closed by
- duplicate: Duplicate of #8230
- 9:39 AM Ticket #8229 (Wiggle tool not found after installation) closed by
- duplicate
- 9:37 AM Ticket #8228 (Wiggle tool not found after installation) closed by
- duplicate
- 9:35 AM Ticket #8227 (Wiggle tool not found after installation) closed by
- duplicate
Dec 26, 2022:
Dec 25, 2022:
- 1:24 AM Ticket #8234 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 1:20 AM Ticket #8233 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Dec 24, 2022:
- 5:09 AM Ticket #8232 (Crash in event loop) created by
- […]
- 1:23 AM Ticket #8231 (Crash in bug reporter) created by
- […]
Dec 23, 2022:
- 7:57 PM Ticket #8230 (Wiggle tool not found after installation) created by
- […]
- 7:56 PM Ticket #8229 (Wiggle tool not found after installation) created by
- […]
- 7:41 PM Ticket #8228 (Wiggle tool not found after installation) created by
- […]
- 10:48 AM Ticket #8227 (Wiggle tool not found after installation) created by
- […]
- 8:16 AM Ticket #8226 (Unsupported scale factor (0.000000) detected on Display0) created by
- […]
- 8:00 AM Ticket #8225 (Wiggle tool not known after installation) created by
- […]
Dec 22, 2022:
- 1:28 PM Ticket #6617 (RFE: speed control on playback sliders) closed by
- fixed: Playback speed control available in next daily build.
- 1:15 PM ChangeLog edited by
- (diff)
- 9:40 AM Ticket #8224 (Crash in event loop) closed by
- can't reproduce
- 9:32 AM ChangeLog edited by
- (diff)
- 2:03 AM Ticket #8224 (Crash in event loop) created by
- […]
Dec 21, 2022:
- 6:33 PM Ticket #5887 (swapna) closed by
- fixed: swapna command available in next daily build
- 4:07 PM Ticket #7462 (Sequence Viewer context menu "blast" should provide more options) closed by
- fixed: Okay, it fills in the actual sequence instead of the alignment index …
- 2:27 PM Ticket #8208 (Session restore: rotamer model not child of parent) closed by
- fixed: The per-residue manager that tracks the active rotamers was creating …
- 10:34 AM Ticket #8223 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate: Hi Hong, Thanks for reporting this problem. It was fixed about 6 …
- 9:58 AM Ticket #8223 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Dec 20, 2022:
- 5:32 PM Ticket #8219 (Failed to create NSOpenGLContext) closed by
- can't reproduce: The Qt window toolkit used by ChimeraX could not create an OpenGL …
- 5:21 PM DeveloperMeetings edited by
- (diff)
- 11:34 AM Ticket #8222 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
- 9:42 AM Ticket #8221 (Restore new session in old ChimeraX) closed by
- limitation
- 9:41 AM Ticket #8220 (Crash in event loop) closed by
- can't reproduce
Dec 19, 2022:
- 7:49 PM Ticket #8221 (Restore new session in old ChimeraX) created by
- […]
- 7:01 PM Ticket #8220 (Crash in event loop) created by
- […]
- 6:44 PM Ticket #8219 (Failed to create NSOpenGLContext) created by
- […]
- 3:00 PM Dev2022-12-19 created by
- 2:59 PM DeveloperMeetings edited by
- (diff)
- 2:42 PM Ticket #8196 (Volume disappears) closed by
- not a bug: I would imagine it would be best if specifying the contour level were …
- 1:34 PM Ticket #8218 (Bio assembly of 2JTN missing many atoms) created by
- Fetching pdbe_bio:2jtn yields a _file_ with 182 protein residues and …
- 1:24 PM Ticket #8198 (Index Error: list index out of range) closed by
- fixed: Changed cx_unified.py so that if rebonding produces a mess (atoms with …
- 12:02 PM Ticket #8207 (Fake Atom Error) closed by
- fixed: I have submitted a pull request on cx_unified.py that fixes this. …
- 11:03 AM Ticket #8217 (Open MRC file: Device not configured) closed by
- nonchimerax: Appears to be a operating file system read error. Here's what the C …
- 10:51 AM Ticket #8216 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:48 AM Ticket #8217 (Open MRC file: Device not configured) created by
- […]
- 10:47 AM Ticket #8209 (Graphics crash, macOS 12.5.1, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:35 AM Ticket #8213 (Linux: QAccessibleTable::indexOfChild invalid child) closed by
- can't reproduce: Wait for a report on Qt6
- 7:36 AM Ticket #8216 (Graphics crash, macOS 10.15.7, Intel HD Graphics 4000) created by
- […]
Dec 18, 2022:
- 11:12 PM Ticket #8215 (Linux: QAccessibleTree::indexFromLogical: invalid index) created by
- […]
- 1:54 AM Ticket #8214 (ChimeraX deb compatible with Debian?) created by
- […] smime.p7s
Dec 16, 2022:
- 11:37 PM Ticket #8213 (Linux: QAccessibleTable::indexOfChild invalid child) created by
- […]
- 4:20 PM Ticket #8212 (Can two AlphaFold predictions be run at the same time with Colab Pro) created by
- Rayees Mattoo asked this on the chimerax user mailing list. I found …
- 12:25 PM Ticket #8211 (Error running second AlphaFold job before first completes) created by
- […]
- 12:17 PM Ticket #8210 (Crash running two AlphaFold predictions in two ChimeraX instances) created by
- […] crash_report.txt
- 12:06 PM Ticket #8209 (Graphics crash, macOS 12.5.1, Intel Iris Graphics 6100) created by
- […]
- 10:47 AM Ticket #8194 (chimerax.build_structure.bond.CreateBondError: Must specify two or ...) closed by
- fixed: Okay, I have submitted a pull request that "fixes" this problem. I …
- 10:10 AM Ticket #8208 (Session restore: rotamer model not child of parent) created by
- […]
- 10:06 AM Ticket #8207 (Fake Atom Error) created by
- […] 4hhb-max-hemoglobin.pdb …
- 9:49 AM Ticket #8205 (Abort from Qt) closed by
- can't reproduce
- 9:43 AM Ticket #8200 (Hydrogen bonded to atom that should not have hydrogens) closed by
- not a bug
- 6:56 AM Ticket #8206 (hbonds: acc_phi_psi() takes 8 positional arguments but 10 were given) created by
- […]
- 6:47 AM Ticket #8205 (Abort from Qt) created by
- […]
- 3:28 AM Ticket #8204 ('close' after paused simulation: 'AtomicStructure' object has no ...) created by
- […]
Dec 15, 2022:
- 4:51 PM Ticket #8199 (TypeError: acc_phi_psi() takes 8 positional arguments but 9 were given) closed by
- fixed: Okay, bundle now does not check H-bonds as part of hydrogen addition. …
- 4:24 PM 2022-12-15 edited by
- (diff)
- 3:22 PM Ticket #8201 (Save mouse undo info: models is None) closed by
- fixed: Appears that the user was using rotate selected models mouse mode, …
- 2:00 PM Ticket #8203 (Save mouse undo info: models is None) closed by
- duplicate
- 1:59 PM Ticket #8202 (Save mouse undo info: models is None) closed by
- duplicate
- 1:52 PM Ticket #8197 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate
- 1:41 PM Ticket #8191 (AttributeError: 'SeqCanvas' object has no attribute 'lead_block') closed by
- can't reproduce: I can't figure out a scenario where a redraw occurs before the initial …
- 11:57 AM Ticket #8203 (Save mouse undo info: models is None) created by
- […]
- 11:56 AM Ticket #8202 (Save mouse undo info: models is None) created by
- […]
- 11:56 AM Ticket #8201 (Save mouse undo info: models is None) created by
- […]
- 11:23 AM Ticket #8200 (Hydrogen bonded to atom that should not have hydrogens) created by
- […]
- 11:11 AM Ticket #8199 (TypeError: acc_phi_psi() takes 8 positional arguments but 9 were given) created by
- […]
- 11:07 AM Ticket #8198 (Index Error: list index out of range) created by
- […] HAG1.pdb
- 10:57 AM Ticket #8197 (mmCIF: 'SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
- 10:44 AM Ticket #8189 (TimeoutError fetching version information) closed by
- can't reproduce: Possibly due to the period of plato downtime yesterday.
- 10:39 AM Ticket #8196 (Volume disappears) created by
- […] emd_7037_0 (1).map
- 10:12 AM Ticket #8195 (raise ValueError("z_align endpoints must be distinct")) created by
- […] MARCpeptide.mol2
- 9:45 AM Ticket #8194 (chimerax.build_structure.bond.CreateBondError: Must specify two or ...) created by
- […]
- 9:11 AM Ticket #8193 (Ribbon structure missing) created by
- […] [[Image(...)]] [[Image(...)]]
- 2:19 AM Ticket #8192 (Update coordinates: RuntimeError: Release Object) created by
- […]
- 12:18 AM Ticket #8191 (AttributeError: 'SeqCanvas' object has no attribute 'lead_block') created by
- […]
Dec 14, 2022:
- 5:13 PM Ticket #8190 (Have web services use HTTPS proxy if set) created by
- Though cxservices supports a proxy_url, chimerax.webservices makes no …
- 3:54 PM Ticket #8189 (TimeoutError fetching version information) created by
- […]
- 1:25 PM Ticket #8180 (Restore new session in old ChimeraX) closed by
- limitation: Yes, you would need to upgrade your Mac or use another (newer) Mac to …
- 1:07 PM Ticket #8188 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 1:01 PM Ticket #8188 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:06 PM Ticket #8186 (Crash in event loop possibly saving large image) closed by
- can't reproduce: I'd guess it is an Apple Intel graphics driver crash. The image being …
- 12:04 PM Ticket #8184 (Crash in ses_surface_geometry) closed by
- duplicate: Tried to compute SES surface for 500,000 or more atoms and machine …
- 11:57 AM Ticket #8185 (Unable to open file for writing) closed by
- not a bug: User probably in non-writable folder
- 11:36 AM Ticket #7577 (Atomspec /A-B sometimes orders chains B,A breaking commands where ...) closed by
- fixed: I looked at fixing this "generically" (i.e. any /A-F atom spec comes …
- 11:31 AM Ticket #8187 (put flatpak build for the generic Linux release in daily builds) created by
- We currently create packages RHEL 8/9 and Ubuntu 20.04/22.04. That …
- 6:05 AM Ticket #8186 (Crash in event loop possibly saving large image) created by
- […]
- 3:04 AM Ticket #8185 (Unable to open file for writing) created by
- […]
- 1:47 AM Ticket #8184 (Crash in ses_surface_geometry) created by
- […]
Dec 13, 2022:
- 6:21 PM Ticket #8183 (Volume image opacity is too sensitive where brightness curve is near ...) created by
- […]
- 5:14 PM Ticket #7999 (Marker operations don't work through transparent surfaces) closed by
- fixed: Fixed. Picking markers was not ignoring transparent surfaces.
- 4:52 PM Ticket #8165 (EMDB quicksubmit (database id) to NIH 3D failing: wwpdb mirror missing file) closed by
- fixed: Okay, I added a fallback to EMDB Europe and have submitted it as a …
- 1:25 PM Ticket #8167 (Matchmaker behavior changed) closed by
- fixed: Okay, this is fixed now and your script will work the same as 1.4 in …
- 1:08 PM Ticket #8182 (Update AlphaFold prediction to use version 2.3.0 which handles larger ...) created by
- The AlphaFold 2.3.0 release made December 13, 2022 has memory …
- 11:44 AM 2022-12-15 created by
- 11:43 AM DeveloperMeetings edited by
- (diff)
- 11:38 AM Ticket #8178 (Picking: numpy.linalg.LinAlgError: Singular matrix) closed by
- fixed: Fixed. The error is because a tether cone had a singular matrix …
- 10:48 AM Ticket #8180 (Restore new session in old ChimeraX) reopened by
- I find this slightly perplexing. If 1.4 actually crashes, then the …
- 10:23 AM Ticket #8181 (Restore new session in old ChimeraX) closed by
- duplicate: Duplicate of #8180
- 9:42 AM Ticket #8180 (Restore new session in old ChimeraX) closed by
- limitation: Hi, Though old sessions are guaranteed to restore in newer versions …
- 9:38 AM Ticket #8179 (Crash opening mmCIF) closed by
- can't reproduce
- 9:12 AM Ticket #8181 (Restore new session in old ChimeraX) created by
- […]
- 8:42 AM Ticket #8180 (Restore new session in old ChimeraX) created by
- […]
- 3:02 AM Ticket #8179 (Crash opening mmCIF) created by
- […]
- 12:59 AM Ticket #8178 (Picking: numpy.linalg.LinAlgError: Singular matrix) created by
- […]
- 12:49 AM Ticket #8177 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Dec 12, 2022:
- 6:00 PM Ticket #8176 (Drag model mouse mode does not work on volume tilted slab) closed by
- fixed: Fixed. Mouse intercept was only being computed for image style region …
- 5:43 PM Ticket #8176 (Drag model mouse mode does not work on volume tilted slab) created by
- […]
- 4:44 PM Dev2022-12-12 edited by
- (diff)
- 4:42 PM Dev2022-12-12 edited by
- (diff)
- 4:41 PM Dev2022-12-12 edited by
- (diff)
- 4:31 PM ChangeLog edited by
- (diff)
- 4:31 PM ChangeLog edited by
- (diff)
- 2:41 PM Ticket #8142 (Qt shim broken in Dec 6 daily builds) closed by
- fixed: Fixed Linux daily builds. There were two problems. One was the PyQt …
- 2:38 PM Ticket #8175 (Linux CentOS 8 import test fails, cannot import libQt6Core.so) created by
- The CentOS 8 daily builds fails importing many modules because …
- 2:33 PM Ticket #8174 (Broken linux daily builds installed when prereq wheels fail to sync to ...) created by
- The Linux daily builds were put on the download page even when syncing …
- 2:29 PM Ticket #8173 (Linux daily build is released even when PyQt install fails) created by
- The Linux daily builds ended up on the download page even though PyQt …
- 2:29 PM Ticket #8171 (Modeller not keeping all requested residues frozen) closed by
- fixed: Okay, this is fixed in both and will be in tomorrow's daily build for …
- 2:22 PM Dev2022-12-12 edited by
- (diff)
- 2:20 PM Dev2022-12-12 created by
- 2:19 PM DeveloperMeetings edited by
- (diff)
- 1:11 PM Ticket #8172 (Read MOLE format: KeyError: 'Channels') closed by
- fixed: The user tried to open a PubChem 3D structure file in JSON format. …
- 12:29 PM Ticket #8172 (Read MOLE format: KeyError: 'Channels') created by
- […]
- 11:29 AM Ticket #8171 (Modeller not keeping all requested residues frozen) created by
- Problem exists in both ChimeraX and Chimera. Fix in ChimeraX first …
- 11:23 AM Ticket #8168 (numpy: Windows fatal exception: access violation) closed by
- wontfix: In old version of ChimeraX. numpy is version 1.21.2. Upgrading numpy …
- 10:56 AM Ticket #8160 (Web services not returning output) closed by
- fixed: This is happening because the clustalo webservice is writing files …
- 10:54 AM Ticket #8169 (Check Waters referencing dead pseudobond group?) closed by
- fixed: Close the tool if the user independently closes the H-bond groups, …
- 9:55 AM Ticket #8166 (Graphic crash, macOS 11.2.3, Intel HD Graphics 6000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 9:54 AM Ticket #8161 (Crash saving PNG) closed by
- can't reproduce: This crash in Pillow saving the image file has been reported several …
- 9:25 AM Ticket #8164 (Crash opening PDB) closed by
- can't reproduce
- 9:24 AM Ticket #8163 (Crash opening PDB) closed by
- can't reproduce
- 9:10 AM Ticket #8159 (Restore new session in old ChimeraX) closed by
- limitation
- 9:09 AM Ticket #8158 (Restore new session in old ChimeraX) closed by
- not a bug
- 8:54 AM Ticket #8170 (Files should use symmetry information if available) created by
- […]
- 7:21 AM Ticket #8169 (Check Waters referencing dead pseudobond group?) created by
- […]
Dec 11, 2022:
Dec 10, 2022:
Dec 9, 2022:
- 4:07 PM Ticket #8154 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) closed by
- limitation: You are running CentOS 7. My guess is that you tried to install the …
- 3:45 PM Ticket #8166 (Graphic crash, macOS 11.2.3, Intel HD Graphics 6000) created by
- […]
- 3:05 PM Ticket #8157 (Installing Linux ChimeraX daily build gives: Custom initialization of ...) closed by
- can't reproduce: OK, hopefully this was fixed as part of the other build system …
- 3:04 PM Ticket #7173 (RFE: Get optional dependencies from the Toolshed and/or pip) closed by
- fixed: Just wanted to give everyone the opportunity to object to its closure, …
- 12:53 PM Ticket #7426 (BlastProtein giving a warning when an error should be reported) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/93c299d5784ca0177115de60337042 …
- 12:28 PM Ticket #8165 (EMDB quicksubmit (database id) to NIH 3D failing: wwpdb mirror missing file) created by
- […]
- 10:13 AM Ticket #8164 (Crash opening PDB) created by
- […]
- 10:03 AM Ticket #8163 (Crash opening PDB) created by
- […]
- 9:12 AM Ticket #8162 (AttributeError: 'BlastProteinFormWidget' object has no attribute ...) closed by
- fixed
- 8:44 AM Ticket #8162 (AttributeError: 'BlastProteinFormWidget' object has no attribute ...) created by
- […]
- 7:04 AM Ticket #8161 (Crash saving PNG) created by
- […]
- 3:14 AM Ticket #8160 (Web services not returning output) created by
- […]
- 2:40 AM Ticket #5055 (Allow BLAST gui to use a sequence viewer id and direct sequence input) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/55298924d24c067dc83112c6d0826a …
- 1:30 AM Ticket #8159 (Restore new session in old ChimeraX) created by
- […]
- 1:29 AM Ticket #8158 (Restore new session in old ChimeraX) created by
- […]
Dec 8, 2022:
- 7:59 PM Ticket #8157 (Installing Linux ChimeraX daily build gives: Custom initialization of ...) created by
- [[Image]]{{{ The following bug report has been submitted: Platform: …
- 5:45 PM Ticket #8038 (Compressed .cif without .gz suffix) closed by
- limitation: Didn't hear any squawking, so assuming the status quo is okay.
- 5:09 PM Ticket #8133 (printable ribbon: "No atoms specifified" error) closed by
- fixed: Fixed by removing the @@num_atoms<500 restriction from the struts atom spec
- 5:06 PM Ticket #8138 (Fatal error: maxassem 1 has no models in it) closed by
- limitation: It was decided to use the updated versions of these entries.
- 3:17 PM NIAID2022 edited by
- (diff)
- 2:54 PM Ticket #8148 (Dead Structure Measurement tool trying to show status) closed by
- fixed
- 2:49 PM Ticket #8156 (silhouettes → tiny boxes) closed by
- nonchimerax: The incorrect silhouette edge display in ChimeraX is caused by …
- 2:44 PM Ticket #8155 (Crash saving PNG) closed by
- can't reproduce: Crash is in PIL writing image file in old ChimeraX. Have seen it …
- 2:38 PM NIAID2022 edited by
- (diff)
- 2:37 PM NIAID2022 edited by
- (diff)
- 2:35 PM Ticket #8152 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 2:34 PM Ticket #8149 (Crash in event loop after volume step 1 on .mtz data) closed by
- can't reproduce: C++ stack trace has no useful info.
- 2:32 PM Ticket #8151 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 2:32 PM Ticket #8150 (Crash with segidChains true) closed by
- duplicate: Duplicate of #8118
- 2:26 PM Ticket #8147 (Unknown crash) closed by
- can't reproduce: Run directly from .dmg
- 2:07 PM NIAID2022 edited by
- (diff)
- 2:02 PM NIAID2022 edited by
- (diff)
- 2:01 PM Ticket #8156 (silhouettes → tiny boxes) created by
- […] Screen Shot 2022-12-08 at 2.01.40 PM.png
- 1:54 PM NIAID2022 edited by
- (diff)
- 1:18 PM Ticket #8155 (Crash saving PNG) created by
- […]
- 12:03 PM Ticket #8145 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: According to the Python stack trace, ToolInstance.delete() is being …
- 11:51 AM WikiStart edited by
- (diff)
- 11:40 AM Ticket #8154 (ImportError: libGLU.so.1: cannot open shared object file: No such file ...) created by
- […]
- 11:39 AM 2022-12-8 edited by
- (diff)
- 11:06 AM Ticket #8153 (Atoms lost reading pdbe_bio file, atoms not grouped by model in mmCIF file) created by
- open pdbe_bio:2MIV maxAssemblies 1 autoStyle false loses the nucleic …
- 8:19 AM Ticket #8152 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 8:18 AM Ticket #8151 (Crash creating QWebEngineProfile at startup) created by
- […]
- 7:26 AM Ticket #8150 (Crash with segidChains true) created by
- […]
- 2:51 AM Ticket #8149 (Crash in event loop after volume step 1 on .mtz data) created by
- […]
Dec 7, 2022:
- 6:22 PM Ticket #8076 (Unnecessary restart required when new file formats installed) closed by
- fixed: Installing an uninstalled bundle was creating a duplicate copy of the …
- 2:13 PM Ticket #5055 (Allow BLAST gui to use a sequence viewer id and direct sequence input) reopened by
- Adding or rewording labels is fine. Is there a particular reason other …
- 1:24 PM ChangeLog edited by
- (diff)
- 12:57 PM Ticket #8148 (Dead Structure Measurement tool trying to show status) created by
- […]
- 12:45 PM Ticket #8147 (Unknown crash) created by
- […]
- 11:38 AM Ticket #8146 (Testing that Mac ARM platform is reported on M1 Macs with ChimeraX 1.5 ...) closed by
- not a bug: Correctly reports platform. Did this test to see why #8135 reported …
- 11:34 AM Ticket #8146 (Testing that Mac ARM platform is reported on M1 Macs with ChimeraX 1.5 ...) created by
- […]
- 10:31 AM Ticket #8145 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 9:56 AM Ticket #8144 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 9:54 AM Ticket #8143 (Crash running modal dialog) closed by
- can't reproduce
- 9:52 AM Ticket #8141 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 9:52 AM Ticket #8140 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 9:20 AM Ticket #8144 (Crash showing Rapid Access at startup) created by
- […]
- 4:54 AM Ticket #8143 (Crash running modal dialog) created by
- […]
- 1:59 AM Ticket #8142 (Qt shim broken in Dec 6 daily builds) created by
- Trying to launch ChimeraX daily just gives a traceback: NOTE: …
- 12:40 AM Ticket #8141 (Crash showing Rapid Access at startup) created by
- […]
- 12:38 AM Ticket #8140 (Crash showing Rapid Access at startup) created by
- […]
Dec 6, 2022:
- 1:49 PM Ticket #8074 (After other presets: Nonstandard name for heavy atom) closed by
- nonchimerax: The RCSB is correcting this entry.
- 1:47 PM Ticket #8112 (sequence layout: list index out of range) closed by
- can't reproduce
- 1:31 PM Ticket #8139 (Missing bond) created by
- […]
- 12:22 PM Ticket #8138 (Fatal error: maxassem 1 has no models in it) created by
- […]
- 12:11 PM Ticket #8137 (1.5 not starting) closed by
- limitation: Try the RHEL/CentOS 9 rpm. We don't test on FC36, but I expect it to …
- 11:46 AM Ticket #8137 (1.5 not starting) created by
- […] startlog.txt
- 11:30 AM Ticket #8136 (Toolshed search does not find some bundles) closed by
- fixed: Fixed.
- 10:57 AM Ticket #8135 (Crash in event loop) closed by
- can't reproduce
- 10:54 AM Ticket #8134 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi David, Thanks for reporting this problem. We recommend upgrading …
- 10:23 AM 2022-12-8 created by
- 10:21 AM DeveloperMeetings edited by
- (diff)
- 10:20 AM Ticket #8132 (Old presets) closed by
- duplicate
- 10:19 AM Ticket #8128 (Crash in QWindowSystemInterface::handleScreenRemoved) closed by
- nonchimerax: Great that you could reproduce it. In fact it is a long standing Qt …
- 9:35 AM Ticket #8136 (Toolshed search does not find some bundles) created by
- Using the search field, searching for "phenix" or "phenixui" does not …
- 7:09 AM Ticket #8135 (Crash in event loop) created by
- […]
- 5:37 AM Ticket #8134 (Crash showing Rapid Access at startup) created by
- […]
- 5:16 AM Ticket #8133 (printable ribbon: "No atoms specifified" error) created by
- […] pdb1bfp_0.ent
- 12:57 AM Ticket #8117 (Crash in OpenMM find_clashing_atoms()) closed by
- fixed: This would happen in 1.3 if the user hit the simulation stop button …
Dec 5, 2022:
- 4:23 PM Ticket #8132 (Old presets) created by
- […]
- 4:20 PM Dev2022-12-5 edited by
- (diff)
- 4:20 PM Dev2022-12-5 edited by
- (diff)
- 4:13 PM Dev2022-12-5 edited by
- (diff)
- 3:11 PM Dev2022-12-5 edited by
- (diff)
- 3:05 PM Dev2022-12-5 edited by
- (diff)
- 3:04 PM Ticket #8131 (SDF charge Index out of bounds) created by
- […] Furfural aminoguanidine bicarbonate.sdf
- 3:03 PM Dev2022-12-5 created by
- 3:01 PM DeveloperMeetings edited by
- (diff)
- 1:52 PM Ticket #8130 ('VolumeViewer' object has no attribute 'tool_window') closed by
- can't reproduce: Not sure how the tool_window attribute can be gone. It is set when …
- 1:46 PM Ticket #8125 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Same as #8123, #8124 but different computer, this report with NVIDIA …
- 1:43 PM Ticket #8123 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: Same as #8124, but different computer, this report with GeForce RTX …
- 1:38 PM Ticket #8124 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce: This message "Qt fatal error: Failed to initialize graphics backend …
- 1:08 PM Ticket #8130 ('VolumeViewer' object has no attribute 'tool_window') created by
- […]
- 12:58 PM Ticket #8127 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Linux
- 12:56 PM Ticket #8126 (hbonds: More than 2 coplanar positions specified) closed by
- not a bug: Almost certainly bad connectivity
- 12:50 PM Ticket #8122 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi Venkatareddy, We aren't able to reproduce this problem ourselves. …
- 11:47 AM Ticket #8121 (Negative decimal places for distance format) closed by
- can't reproduce: Duplicate #7881 Early versions of "distance style" or its settings …
- 11:38 AM Ticket #8129 (Allow Quest 2 or other standalone headsets to join ChimeraX VR meetings) created by
- Allow researchers to use ChimeraX virtual reality and join meetings …
- 11:27 AM Ticket #8119 (Movie encode: No space left on device) closed by
- nonchimerax: The error when saving a movie says OSError: [Errno 28] No space …
- 11:23 AM Ticket #8120 (Restore new session in old ChimeraX) closed by
- not a bug: Hi Shauna! Though old sessions are guaranteed to restore in new …
- 8:06 AM Ticket #8128 (Crash in QWindowSystemInterface::handleScreenRemoved) created by
- […]
- 7:29 AM Ticket #8127 (Crash showing Rapid Access at startup) created by
- […]
Dec 4, 2022:
- 11:30 PM Ticket #8126 (hbonds: More than 2 coplanar positions specified) created by
- […]
- 9:03 PM Ticket #8125 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:49 AM Ticket #8124 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 7:29 AM Ticket #8123 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Dec 3, 2022:
- 9:03 PM Ticket #8122 (Crash showing Rapid Access at startup) created by
- […]
- 5:07 PM Ticket #8121 (Negative decimal places for distance format) created by
- […]
- 12:16 PM Ticket #8120 (Restore new session in old ChimeraX) created by
- […] BoNT G mutants HN.cxs
- 3:07 AM Ticket #8119 (Movie encode: No space left on device) created by
- […]
- 1:49 AM Ticket #8118 (Crash with segidChains true) created by
- […]
Dec 2, 2022:
- 11:46 PM Ticket #8117 (Crash in OpenMM find_clashing_atoms()) created by
- […]
- 4:24 PM Ticket #8110 (Wrong channel names opening second copy of 3-channel microscopy) closed by
- fixed: Fixed. ImageJ tiff grid data was not assigning the grid_id for the …
- 3:46 PM Ticket #7968 (Try OpenMM 8.0 in daily builds) closed by
- fixed: Done. Updated Mac ARM and Intel and Windows and Linux to use OpenMM …
- 2:51 PM Ticket #8109 (pyproject.toml-based "make install" should reinstall) closed by
- not a bug: Works for the version of setuptools shipped with 1.5 (and hopefully …
- 2:23 PM Ticket #8115 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by
- duplicate
- 2:20 PM Ticket #8113 (Crash in event loop) closed by
- can't reproduce
- 1:37 PM Ticket #5055 (Allow BLAST gui to use a sequence viewer id and direct sequence input) closed by
-
fixed:
seq_view… - 1:04 PM Ticket #3014 (Blast Protein tool: threading) closed by
- fixed: They do. :)
- 12:49 PM Ticket #8107 (Map→Style→Transparent surface not toggling transparency) closed by
- fixed: Fixed. Made map transparency toolbar button ignore hidden models even …
- 12:47 PM 2022-12-1 edited by
- (diff)
- 12:37 PM 2022-12-1 edited by
- (diff)
- 12:20 PM 2022-12-1 edited by
- (diff)
- 11:41 AM Ticket #8116 (Crash in QMenu::clear()) created by
- […]
- 11:03 AM Ticket #8115 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 9:36 AM Ticket #8114 (read_xyz: elements: list index out of range) created by
- […]
- 8:09 AM ChangeLog edited by
- (diff)
- 8:08 AM ChangeLog edited by
- (diff)
Dec 1, 2022:
- 11:25 PM Ticket #8113 (Crash in event loop) created by
- […]
- 9:54 PM Ticket #8112 (sequence layout: list index out of range) created by
- […]
- 6:20 PM Ticket #8111 (AlphaFold prediction broken with energy minimization or pdb templates) closed by
- fixed: Fixed. Updated ChimeraX colabfold script to install dependencies for …
- 6:04 PM Ticket #8111 (AlphaFold prediction broken with energy minimization or pdb templates) created by
- Google Colab update from python 3.7 to 3.8 breaking ChimeraX AlphaFold …
- 5:36 PM Ticket #8110 (Wrong channel names opening second copy of 3-channel microscopy) created by
- […]
- 5:15 PM Ticket #8109 (pyproject.toml-based "make install" should reinstall) created by
- For bundle_info.xml-based bundles, "make install" forces a reinstall …
- 3:28 PM Ticket #8106 (Possibly provide event to double-click criteria() call) closed by
- fixed: Okay, off the same logic now all methods (label/criteria/callback) of …
- 1:16 PM Ticket #8108 (Help Viewer doesn't agree with MGnify entry page opened from Blast ...) closed by
- nonchimerax: Works on my machine; both on the daily build and my current developer …
- 12:57 PM Ticket #8108 (Help Viewer doesn't agree with MGnify entry page opened from Blast ...) created by
- When I do a blast search of ESMFold database and then in the Blast …
- 12:04 PM Ticket #5056 (Allow blastprotein command to use a UniProt name or id) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/05f11de2ccb9226f6ab3ccd5120c36 …
- 9:47 AM Ticket #8107 (Map→Style→Transparent surface not toggling transparency) created by
- […]
- 8:12 AM Ticket #8106 (Possibly provide event to double-click criteria() call) created by
- […]
- 5:01 AM Ticket #8105 (ChimeraX/lib not on library path) created by
- […]
- 1:26 AM Ticket #8104 (TmplResidue SMILES string) closed by
- fixed: Added. To get the information use …
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