Opened 3 years ago

Closed 3 years ago

#8227 closed defect (duplicate)

Wiggle tool not found after installation

Reported by: chimerax-bug-report@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-5.15.0-56-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ~/home/makaia/Programs/wiggle/; devel install ~/home/makaia/Programs/wiggle/

Missing or invalid "path" argument: File
'/home/makaia/home/makaia/Programs/wiggle/' does not exist  

> ~/home/makaia/Programs/wiggle; devel install ~/home/makaia/Programs/wiggle

Missing or invalid "path" argument: File
'/home/makaia/home/makaia/Programs/wiggle' does not exist  

> devel build /home/makaia/Programs/wiggle

running build  
running build_py  
running bdist_wheel  
/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning:
setup.py install is deprecated. Use build and pip and other standards-based
tools.  
warnings.warn(  
installing to build/bdist.linux-x86_64/wheel  
running install  
running install_lib  
creating build/bdist.linux-x86_64  
creating build/bdist.linux-x86_64/wheel  
creating build/bdist.linux-x86_64/wheel/chimerax  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/embedding.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/low_pass.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/clustering.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/path_inference_dijkstra.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/wiggle_packager.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniDRGN.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniSPARC.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/dijkstra_modified.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/volumiser.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle2.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
running install_egg_info  
running egg_info  
creating wiggle.egg-info  
writing wiggle.egg-info/PKG-INFO  
writing dependency_links to wiggle.egg-info/dependency_links.txt  
writing requirements to wiggle.egg-info/requires.txt  
writing top-level names to wiggle.egg-info/top_level.txt  
writing manifest file 'wiggle.egg-info/SOURCES.txt'  
reading manifest file 'wiggle.egg-info/SOURCES.txt'  
adding license file 'LICENSE'  
writing manifest file 'wiggle.egg-info/SOURCES.txt'  
Copying wiggle.egg-info to
build/bdist.linux-x86_64/wheel/wiggle-0.2.2-py3.9.egg-info  
running install_scripts  
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")  
creating build/bdist.linux-x86_64/wheel/wiggle-0.2.2.dist-info/WHEEL  
creating 'dist/wiggle-0.2.2-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it  
adding 'chimerax/wiggle/__init__.py'  
adding 'chimerax/wiggle/tool.py'  
adding 'chimerax/wiggle/wiggle.py'  
adding 'chimerax/wiggle/deps/clustering.py'  
adding 'chimerax/wiggle/deps/data_handler.py'  
adding 'chimerax/wiggle/deps/dijkstra_modified.py'  
adding 'chimerax/wiggle/deps/embedding.py'  
adding 'chimerax/wiggle/deps/low_pass.py'  
adding 'chimerax/wiggle/deps/miniDRGN.py'  
adding 'chimerax/wiggle/deps/miniSPARC.py'  
adding 'chimerax/wiggle/deps/mrc.py'  
adding 'chimerax/wiggle/deps/path_inference_dijkstra.py'  
adding 'chimerax/wiggle/deps/ui_compiled.py'  
adding 'chimerax/wiggle/deps/volumiser.py'  
adding 'chimerax/wiggle/deps/wiggle_packager.py'  
adding 'chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'  
adding 'chimerax/wiggle/resources/Wiggle.PNG'  
adding 'chimerax/wiggle/resources/Wiggle2.PNG'  
adding 'wiggle-0.2.2.dist-info/LICENSE'  
adding 'wiggle-0.2.2.dist-info/METADATA'  
adding 'wiggle-0.2.2.dist-info/WHEEL'  
adding 'wiggle-0.2.2.dist-info/top_level.txt'  
adding 'wiggle-0.2.2.dist-info/RECORD'  
removing build/bdist.linux-x86_64/wheel  
Distribution is in /home/makaia/Programs/wiggle/dist/wiggle-0.2.2-py3-none-
any.whl  
  

> devel install /home/makaia/Programs/wiggle

running build  
running build_py  
running bdist_wheel  
/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning:
setup.py install is deprecated. Use build and pip and other standards-based
tools.  
warnings.warn(  
installing to build/bdist.linux-x86_64/wheel  
running install  
running install_lib  
creating build/bdist.linux-x86_64/wheel  
creating build/bdist.linux-x86_64/wheel/chimerax  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/wiggle.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc
-> build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps/__pycache__  
copying build/lib/chimerax/wiggle/deps/embedding.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/low_pass.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/clustering.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/path_inference_dijkstra.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/wiggle_packager.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniDRGN.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/ui_compiled.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/miniSPARC.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/mrc.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/data_handler.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/dijkstra_modified.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
copying build/lib/chimerax/wiggle/deps/volumiser.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/deps  
creating build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/resources/Wiggle2.PNG ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle/resources  
copying build/lib/chimerax/wiggle/__init__.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
copying build/lib/chimerax/wiggle/tool.py ->
build/bdist.linux-x86_64/wheel/chimerax/wiggle  
running install_egg_info  
running egg_info  
writing wiggle.egg-info/PKG-INFO  
writing dependency_links to wiggle.egg-info/dependency_links.txt  
writing requirements to wiggle.egg-info/requires.txt  
writing top-level names to wiggle.egg-info/top_level.txt  
reading manifest file 'wiggle.egg-info/SOURCES.txt'  
adding license file 'LICENSE'  
writing manifest file 'wiggle.egg-info/SOURCES.txt'  
Copying wiggle.egg-info to
build/bdist.linux-x86_64/wheel/wiggle-0.2.2-py3.9.egg-info  
running install_scripts  
adding license file "LICENSE" (matched pattern "LICEN[CS]E*")  
creating build/bdist.linux-x86_64/wheel/wiggle-0.2.2.dist-info/WHEEL  
creating 'dist/wiggle-0.2.2-py3-none-any.whl' and adding
'build/bdist.linux-x86_64/wheel' to it  
adding 'chimerax/wiggle/__init__.py'  
adding 'chimerax/wiggle/tool.py'  
adding 'chimerax/wiggle/wiggle.py'  
adding 'chimerax/wiggle/deps/clustering.py'  
adding 'chimerax/wiggle/deps/data_handler.py'  
adding 'chimerax/wiggle/deps/dijkstra_modified.py'  
adding 'chimerax/wiggle/deps/embedding.py'  
adding 'chimerax/wiggle/deps/low_pass.py'  
adding 'chimerax/wiggle/deps/miniDRGN.py'  
adding 'chimerax/wiggle/deps/miniSPARC.py'  
adding 'chimerax/wiggle/deps/mrc.py'  
adding 'chimerax/wiggle/deps/path_inference_dijkstra.py'  
adding 'chimerax/wiggle/deps/ui_compiled.py'  
adding 'chimerax/wiggle/deps/volumiser.py'  
adding 'chimerax/wiggle/deps/wiggle_packager.py'  
adding 'chimerax/wiggle/deps/__pycache__/ui_compiled.cpython-37.pyc'  
adding 'chimerax/wiggle/resources/Wiggle.PNG'  
adding 'chimerax/wiggle/resources/Wiggle2.PNG'  
adding 'wiggle-0.2.2.dist-info/LICENSE'  
adding 'wiggle-0.2.2.dist-info/METADATA'  
adding 'wiggle-0.2.2.dist-info/WHEEL'  
adding 'wiggle-0.2.2.dist-info/top_level.txt'  
adding 'wiggle-0.2.2.dist-info/RECORD'  
removing build/bdist.linux-x86_64/wheel  
Distribution is in /home/makaia/Programs/wiggle/dist/wiggle-0.2.2-py3-none-
any.whl  
[toolshed install](help:user/commands/toolshed.html#install)  
/home/makaia/Programs/wiggle/dist/wiggle-0.2.2-py3-none-any.whl  
  
[toolshed install /home/makaia/Programs/wiggle/dist/wiggle-0.2.2-py3-none-  
any.whl](cxcmd:toolshed install  
/home/makaia/Programs/wiggle/dist/wiggle-0.2.2-py3-none-any.whl)  
  
Errors may have occurred when running pip:  
pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX/1.4/site-packages  
sysconfig: /home/makaia/.local/lib/python3.9/site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX/1.4/site-packages  
sysconfig: /home/makaia/.local/lib/python3.9/site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX/include/python3.9/wiggle  
sysconfig: /home/makaia/.local/include/python3.9/wiggle  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX/bin  
sysconfig: /home/makaia/.local/bin  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX  
sysconfig: /home/makaia/.local  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: /home/makaia/.local/share/ChimeraX/include/python3.9/UNKNOWN  
sysconfig: /home/makaia/.local/include/python3.9/UNKNOWN  
WARNING: You are using pip version 21.3.1; however, version 22.3.1 is
available.  
You should consider upgrading via the '/usr/bin/chimerax -m pip install
--upgrade pip' command.  
\---  
pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing ./Programs/wiggle/dist/wiggle-0.2.2-py3-none-any.whl  
Requirement already satisfied: ChimeraX-Core~=1.1 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from wiggle==0.2.2) (1.4)  
Requirement already satisfied: ChimeraX-UI~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from wiggle==0.2.2) (1.18.3)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-UI~=1.0->wiggle==0.2.2)
(1.1)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-UI~=1.0->wiggle==0.2.2)
(1.0)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-UI~=1.0->wiggle==0.2.2)
(1.1)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-Graphics~=1.0->ChimeraX-
UI~=1.0->wiggle==0.2.2) (1.2)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-Graphics~=1.0->ChimeraX-
UI~=1.0->wiggle==0.2.2) (1.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in /usr/lib/ucsf-
chimerax/lib/python3.9/site-packages (from ChimeraX-
SelInspector~=1.0->ChimeraX-UI~=1.0->wiggle==0.2.2) (1.0)  
Installing collected packages: wiggle  
Successfully installed wiggle-0.2.2  
\---  
Successfully installed wiggle-0.2.2  
Installed wiggle (0.2.2)  
  

> ui tool show wiggle

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 559, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/__init__.py", line 1325, in start_tool  
return cls._get_func(api, "start_tool")(session, bi, ti)  
File "/home/makaia/.local/share/ChimeraX/1.4/site-
packages/chimerax/wiggle/__init__.py", line 31, in start_tool  
raise ValueError("trying to start unknown tool: %s" % ti.name)  
ValueError: trying to start unknown tool: wiggle  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/cmd.py",
line 219, in ui_tool_show  
bi.start_tool(session, name)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 564, in start_tool  
raise ToolshedError(  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool wiggle in
bundle wiggle:  
trying to start unknown tool: wiggle  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool wiggle in
bundle wiggle:  
trying to start unknown tool: wiggle  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/toolshed/info.py", line 564, in start_tool  
raise ToolshedError(  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 520.61.05
OpenGL renderer: NVIDIA GeForce GTX 1060 6GB/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7A38
OS: Ubuntu 22.04 jammy
Architecture: 64bit ELF
Virtual Machine: none
CPU: 12 AMD Ryzen 5 3600 6-Core Processor
Cache Size: 512 KB
Memory:
	               total        used        free      shared  buff/cache   available
	Mem:            31Gi       1.7Gi        28Gi        24Mi       1.4Gi        29Gi
	Swap:          2.0Gi          0B       2.0Gi

Graphics:
	29:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP106 [GeForce GTX 1060 6GB] [10de:1c03] (rev a1)	
	Subsystem: NVIDIA Corporation GP106 [GeForce GTX 1060 6GB] [10de:11d7]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2022.5.18.1
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    distro: 1.6.0
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    wiggle: 0.2.2

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Tool Shed
Owner: set to Greg Couch
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Wiggle tool not found after installation

comment:2 by Eric Pettersen, 3 years ago

Resolution: → duplicate
Status: assigned → closed
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