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Opened 3 years ago
Closed 3 years ago
#8186 closed defect (can't reproduce)
Crash in event loop possibly saving large image
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000070001b519000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001a516000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700019513000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700018510000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001750d000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070001650a000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700015507000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700014504000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x0000700013501000 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000001179e1e00 (most recent call first):
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [52167]
Path: /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.5.0 (1.5.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [52167]
User ID: 502
Date/Time: 2022-12-14 11:59:39.691 +0100
OS Version: macOS 11.3 (20E232)
Report Version: 12
Anonymous UUID: 10611757-CD53-5AC6-82E2-2F52DAFCD8C6
Time Awake Since Boot: 1200000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x0000000129f322b0
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x129f322b0:
shared memory 129f08000-129f18000 [ 64K] r--/r-- SM=SHM
--> mapped file 129f18000-129fb8000 [ 640K] r-x/rwx SM=COW Object_id=d6257e75
mapped file 129fb8000-129fc8000 [ 64K] rw-/rwx SM=COW Object_id=d2d9ca75
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x00007fff20349946 0 + 140733733706054
1 ??? 0x00007fff2025cbe5 0 + 140733732735973
2 ??? 0x00007fff203bdd7d 0 + 140733734182269
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x00007fff20470cd5 0 + 140733734915285
5 ??? 0x00007fff20470496 0 + 140733734913174
6 ??? 0x00007fff2046f75c 0 + 140733734909788
7 ??? 0x00007fff28691203 0 + 140733871362563
8 ??? 0x00007fff28690f65 0 + 140733871361893
9 ??? 0x00007fff28690d03 0 + 140733871361283
10 ??? 0x00007fff22c6bb32 0 + 140733776837426
11 ??? 0x00007fff22c6a305 0 + 140733776831237
12 ??? 0x00007fff22c5c679 0 + 140733776774777
13 ??? 0x0000000129f310ac 0 + 4998762668
14 ??? 0x0000000116752326 0 + 4671742758
15 ??? 0x0000000116749235 0 + 4671705653
16 ??? 0x0000000116f45d9a 0 + 4680080794
17 ??? 0x0000000108d9b71d 0 + 4443453213
18 ??? 0x0000000108d5c5b7 0 + 4443194807
19 ??? 0x0000000108e34e9c 0 + 4444081820
20 ??? 0x0000000108e322a2 0 + 4444070562
21 ??? 0x0000000108d5cd28 0 + 4443196712
22 ??? 0x0000000108d5ed6a 0 + 4443204970
23 ??? 0x0000000108e34e0c 0 + 4444081676
24 ??? 0x0000000108e322a2 0 + 4444070562
25 ??? 0x0000000108e35b03 0 + 4444084995
26 ??? 0x0000000108d5ccb1 0 + 4443196593
27 ??? 0x0000000108e34e0c 0 + 4444081676
28 ??? 0x0000000108e3234b 0 + 4444070731
29 ??? 0x0000000108e35b03 0 + 4444084995
30 ??? 0x0000000108e2bdab 0 + 4444044715
31 ??? 0x0000000108e28c12 0 + 4444032018
32 ??? 0x0000000108d9b023 0 + 4443451427
33 ??? 0x0000000108e34e0c 0 + 4444081676
34 ??? 0x0000000108e3234b 0 + 4444070731
35 ??? 0x0000000108e35b03 0 + 4444084995
36 ??? 0x0000000108d5ccb1 0 + 4443196593
37 ??? 0x0000000108e34e0c 0 + 4444081676
38 ??? 0x0000000108e3234b 0 + 4444070731
39 ??? 0x0000000108e35b03 0 + 4444084995
40 ??? 0x0000000108d5ccb1 0 + 4443196593
41 ??? 0x0000000108e9b870 0 + 4444502128
42 ??? 0x0000000108e9af87 0 + 4444499847
43 ??? 0x0000000108e9b58f 0 + 4444501391
44 ??? 0x0000000108e9b49b 0 + 4444501147
45 ??? 0x0000000108d0ddc8 0 + 4442873288
46 ??? 0x00007fff20393f3d 0 + 140733734010685
Thread 1:: ThreadPoolServiceThread
0 ??? 0x00007fff2034c1ea 0 + 140733733716458
1 ??? 0x0000000122514927 0 + 4870719783
2 ??? 0x0000000122491a5c 0 + 4870183516
3 ??? 0x0000000122449998 0 + 4869888408
4 ??? 0x00000001224b3eb8 0 + 4870323896
5 ??? 0x000000012249b2ad 0 + 4870222509
6 ??? 0x00000001224b404a 0 + 4870324298
7 ??? 0x00000001224db908 0 + 4870486280
8 ??? 0x00007fff20378954 0 + 140733733898580
9 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 2:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224a77bf 0 + 4870272959
4 ??? 0x00000001224a826c 0 + 4870275692
5 ??? 0x00000001224a7ddd 0 + 4870274525
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 3:: Chrome_IOThread
0 ??? 0x00007fff2034c1ea 0 + 140733733716458
1 ??? 0x0000000122514927 0 + 4870719783
2 ??? 0x0000000122491a5c 0 + 4870183516
3 ??? 0x0000000122449998 0 + 4869888408
4 ??? 0x00000001224b3eb8 0 + 4870323896
5 ??? 0x00000001213d93a2 0 + 4852650914
6 ??? 0x00000001224b404a 0 + 4870324298
7 ??? 0x00000001224db908 0 + 4870486280
8 ??? 0x00007fff20378954 0 + 140733733898580
9 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 4:: NetworkConfigWatcher
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 5:: ThreadPoolForegroundWorker
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224a77bf 0 + 4870272959
4 ??? 0x00000001224a826c 0 + 4870275692
5 ??? 0x00000001224a7e6d 0 + 4870274669
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 6:: CompositorTileWorker1
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x00000001224dad1b 0 + 4870483227
2 ??? 0x00000001245a892d 0 + 4904880429
3 ??? 0x00000001224db908 0 + 4870486280
4 ??? 0x00007fff20378954 0 + 140733733898580
5 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 7:: Chrome_InProcGpuThread
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 8:: Chrome_ChildIOThread
0 ??? 0x00007fff2034c1ea 0 + 140733733716458
1 ??? 0x0000000122514927 0 + 4870719783
2 ??? 0x0000000122491a5c 0 + 4870183516
3 ??? 0x0000000122449998 0 + 4869888408
4 ??? 0x00000001224b3eb8 0 + 4870323896
5 ??? 0x00000001224b404a 0 + 4870324298
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 9:: VizCompositorThread
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 11:: NetworkService
0 ??? 0x00007fff2034c1ea 0 + 140733733716458
1 ??? 0x0000000122514927 0 + 4870719783
2 ??? 0x0000000122491a5c 0 + 4870183516
3 ??? 0x0000000122449998 0 + 4869888408
4 ??? 0x00000001224b3eb8 0 + 4870323896
5 ??? 0x00000001224b404a 0 + 4870324298
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224a77bf 0 + 4870272959
4 ??? 0x00000001224a826c 0 + 4870275692
5 ??? 0x00000001224a7ecd 0 + 4870274765
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 14:: NetworkConfigWatcher
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 15:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 16:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 17:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 18:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 19:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 20:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108e35b03 0 + 4444084995
8 ??? 0x0000000108d5ccb1 0 + 4443196593
9 ??? 0x0000000108e32989 0 + 4444072329
10 ??? 0x0000000108d5cd28 0 + 4443196712
11 ??? 0x0000000108e34e0c 0 + 4444081676
12 ??? 0x0000000108e3227e 0 + 4444070526
13 ??? 0x0000000108d5cd28 0 + 4443196712
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e3227e 0 + 4444070526
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5edb2 0 + 4443205042
18 ??? 0x0000000108eda046 0 + 4444758086
19 ??? 0x0000000108e8b2f9 0 + 4444435193
20 ??? 0x00007fff20378954 0 + 140733733898580
21 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 21:
0 ??? 0x00007fff203499e2 0 + 140733733706210
1 ??? 0x0000000108d65306 0 + 4443230982
2 ??? 0x0000000108e34e0c 0 + 4444081676
3 ??? 0x0000000108e3227e 0 + 4444070526
4 ??? 0x0000000108e35b03 0 + 4444084995
5 ??? 0x0000000108d5ccb1 0 + 4443196593
6 ??? 0x0000000108e34e0c 0 + 4444081676
7 ??? 0x0000000108e3227e 0 + 4444070526
8 ??? 0x0000000108e35b03 0 + 4444084995
9 ??? 0x0000000108d5ccb1 0 + 4443196593
10 ??? 0x0000000108e34e0c 0 + 4444081676
11 ??? 0x0000000108e323e8 0 + 4444070888
12 ??? 0x0000000108e35b03 0 + 4444084995
13 ??? 0x0000000108d5ccb1 0 + 4443196593
14 ??? 0x0000000108e34e0c 0 + 4444081676
15 ??? 0x0000000108e322a2 0 + 4444070562
16 ??? 0x0000000108d5cd28 0 + 4443196712
17 ??? 0x0000000108d5ee59 0 + 4443205209
18 ??? 0x0000000108e32989 0 + 4444072329
19 ??? 0x0000000108d5cd28 0 + 4443196712
20 ??? 0x0000000108e34e0c 0 + 4444081676
21 ??? 0x0000000108e3227e 0 + 4444070526
22 ??? 0x0000000108d5cd28 0 + 4443196712
23 ??? 0x0000000108e34e0c 0 + 4444081676
24 ??? 0x0000000108e3227e 0 + 4444070526
25 ??? 0x0000000108d5cd28 0 + 4443196712
26 ??? 0x0000000108d5edb2 0 + 4443205042
27 ??? 0x0000000108eda046 0 + 4444758086
28 ??? 0x0000000108e8b2f9 0 + 4444435193
29 ??? 0x00007fff20378954 0 + 140733733898580
30 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 22:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108d78c5a 0 + 4443311194
6 ??? 0x0000000108e31bbe 0 + 4444068798
7 ??? 0x0000000108d5cd28 0 + 4443196712
8 ??? 0x0000000108e32989 0 + 4444072329
9 ??? 0x0000000108d5cd28 0 + 4443196712
10 ??? 0x0000000108e34e0c 0 + 4444081676
11 ??? 0x0000000108e3227e 0 + 4444070526
12 ??? 0x0000000108d5cd28 0 + 4443196712
13 ??? 0x0000000108e34e0c 0 + 4444081676
14 ??? 0x0000000108e3227e 0 + 4444070526
15 ??? 0x0000000108d5cd28 0 + 4443196712
16 ??? 0x0000000108d5edb2 0 + 4443205042
17 ??? 0x0000000108eda046 0 + 4444758086
18 ??? 0x0000000108e8b2f9 0 + 4444435193
19 ??? 0x00007fff20378954 0 + 140733733898580
20 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 23:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000108e8b6a6 0 + 4444436134
2 ??? 0x000000012b32457e 0 + 5019682174
3 ??? 0x000000012b324126 0 + 5019681062
4 ??? 0x0000000108d9b0bd 0 + 4443451581
5 ??? 0x0000000108e34e0c 0 + 4444081676
6 ??? 0x0000000108e3234b 0 + 4444070731
7 ??? 0x0000000108d5cd28 0 + 4443196712
8 ??? 0x0000000108e32989 0 + 4444072329
9 ??? 0x0000000108d5cd28 0 + 4443196712
10 ??? 0x0000000108e34e0c 0 + 4444081676
11 ??? 0x0000000108e3227e 0 + 4444070526
12 ??? 0x0000000108d5cd28 0 + 4443196712
13 ??? 0x0000000108e34e0c 0 + 4444081676
14 ??? 0x0000000108e3227e 0 + 4444070526
15 ??? 0x0000000108d5cd28 0 + 4443196712
16 ??? 0x0000000108d5edb2 0 + 4443205042
17 ??? 0x0000000108eda046 0 + 4444758086
18 ??? 0x0000000108e8b2f9 0 + 4444435193
19 ??? 0x00007fff20378954 0 + 140733733898580
20 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 24:: com.apple.NSEventThread
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00007fff20471c6f 0 + 140733734919279
3 ??? 0x00007fff2047034f 0 + 140733734912847
4 ??? 0x00007fff2046f75c 0 + 140733734909788
5 ??? 0x00007fff22df1baa 0 + 140733778434986
6 ??? 0x00007fff20378954 0 + 140733733898580
7 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 25:: MemoryInfra
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224e2bef 0 + 4870515695
4 ??? 0x00000001224181c9 0 + 4869685705
5 ??? 0x0000000122491a5c 0 + 4870183516
6 ??? 0x0000000122449998 0 + 4869888408
7 ??? 0x00000001224b3eb8 0 + 4870323896
8 ??? 0x00000001224b404a 0 + 4870324298
9 ??? 0x00000001224db908 0 + 4870486280
10 ??? 0x00007fff20378954 0 + 140733733898580
11 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 26:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224a77bf 0 + 4870272959
4 ??? 0x00000001224a7f9a 0 + 4870274970
5 ??? 0x00000001224a7e0d 0 + 4870274573
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 27:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000109c9c23f 0 + 4459184703
2 ??? 0x00007fff20378954 0 + 140733733898580
3 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 28:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000109c9c23f 0 + 4459184703
2 ??? 0x00007fff20378954 0 + 140733733898580
3 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 29:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000109c9c23f 0 + 4459184703
2 ??? 0x00007fff20378954 0 + 140733733898580
3 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 30:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000109c9c23f 0 + 4459184703
2 ??? 0x00007fff20378954 0 + 140733733898580
3 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 31:
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x0000000109c9c23f 0 + 4459184703
2 ??? 0x00007fff20378954 0 + 140733733898580
3 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 32:: QFileInfoGatherer
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x00000001168dd8eb 0 + 4673362155
2 ??? 0x00000001168dd85e 0 + 4673362014
3 ??? 0x000000011e231e0d 0 + 4800585229
4 ??? 0x00000001168d3663 0 + 4673320547
5 ??? 0x00007fff20378954 0 + 140733733898580
6 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 33:
0 ??? 0x00007fff20374484 0 + 140733733880964
Thread 34:
0 ??? 0x00007fff20374484 0 + 140733733880964
Thread 35:
0 ??? 0x00007fff20374484 0 + 140733733880964
Thread 36:
0 ??? 0x00007fff20374484 0 + 140733733880964
Thread 37:: ThreadPoolForegroundWorker
0 ??? 0x00007fff2034332a 0 + 140733733679914
1 ??? 0x00007fff2034369c 0 + 140733733680796
2 ??? 0x00000001224e2e26 0 + 4870516262
3 ??? 0x00000001224a77bf 0 + 4870272959
4 ??? 0x00000001224a7f9a 0 + 4870274970
5 ??? 0x00000001224a7e6d 0 + 4870274669
6 ??? 0x00000001224db908 0 + 4870486280
7 ??? 0x00007fff20378954 0 + 140733733898580
8 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 38:: QFileInfoGatherer
0 ??? 0x00007fff20345d4e 0 + 140733733690702
1 ??? 0x00000001168dd8eb 0 + 4673362155
2 ??? 0x00000001168dd85e 0 + 4673362014
3 ??? 0x000000011e231e0d 0 + 4800585229
4 ??? 0x00000001168d3663 0 + 4673320547
5 ??? 0x00007fff20378954 0 + 140733733898580
6 ??? 0x00007fff203744a7 0 + 140733733880999
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00000001179e1e00 rcx: 0x00007f9df9955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000a rbp: 0x00007f9df9955a80 rsp: 0x00007f9df9955a58
r8: 0x00007f9df9955f48 r9: 0xd690c31b5bdb0fd1 r10: 0x00000001179e1e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000600002600be0 r14: 0x000000000000000a r15: 0x0000000000000016
rip: 0x00007fff20349946 rfl: 0x0000000000000246 cr2: 0x00007f9df9ec90e0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
0x11790a000 - 0x1179a5fff dyld (851.27) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=852K resident=0K(0%) swapped_out_or_unallocated=852K(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 9.8M 12
CG image 1540K 48
CoreAnimation 2316K 108
CoreGraphics 16K 3
CoreServices 624K 2
CoreUI image data 5140K 43
Foundation 40K 2
Kernel Alloc Once 1316K 4
MALLOC 1.1G 1246
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 3
OpenGL GLSL 384K 4
STACK GUARD 152K 38
Stack 294.3M 39
Stack Guard 56.0M 1
VM_ALLOCATE 259.9M 256
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 224K 2
__DATA_CONST 32K 1
__LINKEDIT 240K 2
__TEXT 624K 1
dylib 3692K 18
dylib (reserved) 916K 115 reserved VM address space (unallocated)
mapped file 640.5M 498
shared memory 4520K 35
=========== ======= =======
TOTAL 2.8G 2498
TOTAL, minus reserved VM space 2.4G 2498
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
Chain information for
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1
---
Chain | Description
A | No description available
> show cartoons
> hide #1 models
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb
F_actin_7bt7.pdb title:
F-actin-adp complex structure [more info...]
Chain information for F_actin_7bt7.pdb #2
---
Chain | Description | UniProt
A B C D E | α-actin-1 | ACTS_CHICK
Non-standard residues in F_actin_7bt7.pdb #2
---
ADP — adenosine-5'-diphosphate
MG — magnesium ion
> show #!2 atoms
> style #!2 sphere
Changed 14530 atom styles
> style #!2 ball
Changed 14530 atom styles
> style #!2 stick
Changed 14530 atom styles
> ui tool show "Selection Inspector"
> rainbow #!2
> color #!2 bypolymer
> rainbow #!2
> color #!2 byhetero
> show #!2 surfaces
> hide #!2 surfaces
> hide #!2 cartoons
> show #!2 cartoons
> lighting full
> lighting soft
> lighting simple
> view clip false
> style #!2 stick
Changed 14530 atom styles
> style #!2 stick
Changed 14530 atom styles
> style #!2 sphere
Changed 14530 atom styles
> style #!2 sphere
Changed 14530 atom styles
> style #!2 ball
Changed 14530 atom styles
> show #!2 cartoons
> hide #!2 cartoons
> hide #!2 atoms
> style #!2 sphere
Changed 14530 atom styles
> show #!2 cartoons
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3
---
Chain | Description
A | No description available
> view #3 clip false
> show #3 target m
> show #!2 target m
> mmaker #2 to #3 showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with
F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7
Alignment identifier is 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)
Drag select of 5 residues
> select add #2
14554 atoms, 14845 bonds, 9 pseudobonds, 1863 residues, 4 models selected
> select add #3
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected
> select subtract #2
2963 atoms, 3019 bonds, 377 residues, 6 models selected
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,-36.428,0,1,0,-36.184,0,0,1,64.784
> mmaker #2 to #3 showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with
F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7
Alignment identifier is 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Hiding conservation header for alignment 2
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)
> ui mousemode right "translate selected models"
> hide #!2 models
> show #!2 models
> select subtract #3
Nothing selected
> hide #!2 models
> select add #2
14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected
> show #!2 models
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.032526,0.86166,-0.50645,-96.449,-0.67509,-0.35472,-0.64686,253.62,-0.73702,0.36294,0.57016,-6.7561
> ui tool show Matchmaker
> matchmaker #1,3 to #2/D pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb,
chain A (#1), sequence alignment score = 1208.2
Alignment identifier is 3
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3
Hiding conservation header for alignment 3
Chains used in RMSD evaluation for alignment 3:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/D
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3
RMSD between 345 pruned atom pairs is 0.760 angstroms; (across all 369 pairs:
1.349)
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 704.8
Alignment identifier is 4
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4
Hiding conservation header for alignment 4
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4
RMSD between 211 pruned atom pairs is 1.129 angstroms; (across all 346 pairs:
3.651)
> select subtract #2
5 models selected
> select add #3
2963 atoms, 3019 bonds, 377 residues, 1 model selected
> select add #2
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected
> ui mousemode right "translate selected models"
> select subtract #2
2963 atoms, 3019 bonds, 377 residues, 6 models selected
> ui tool show Matchmaker
> show #1 models
> hide #3 models
> show #3 models
> hide #3 models
> show #3 models
> hide #3 models
> hide #1 models
> show #3 models
> matchmaker #1,3 to #2/E pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb,
chain A (#1), sequence alignment score = 1141
Alignment identifier is 5
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5
Hiding conservation header for alignment 5
Chains used in RMSD evaluation for alignment 5:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/E
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5
RMSD between 348 pruned atom pairs is 0.782 angstroms; (across all 369 pairs:
1.301)
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 695.2
Alignment identifier is 6
Showing conservation header ("seq_conservation" residue attribute) for
alignment 6
Hiding conservation header for alignment 6
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6
RMSD between 220 pruned atom pairs is 1.119 angstroms; (across all 348 pairs:
3.650)
> select subtract #3
Nothing selected
> select add #2
14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected
> select add #3
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4
---
Chain | Description
A | No description available
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5
---
Chain | Description
A | No description available
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6
---
Chain | Description
A | No description available
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7
---
Chain | Description
A | No description available
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb
Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8
---
Chain | Description
A | No description available
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
> ui tool show Matchmaker
> matchmaker #3 to #2/A pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain A (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 721.7
Alignment identifier is 7
Showing conservation header ("seq_conservation" residue attribute) for
alignment 7
Hiding conservation header for alignment 7
Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 7
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)
> ui tool show Matchmaker
> matchmaker #4 to #2/B pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain B (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence
alignment score = 713.3
Alignment identifier is 8
Showing conservation header ("seq_conservation" residue attribute) for
alignment 8
Hiding conservation header for alignment 8
Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 8
RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs:
2.901)
> ui tool show Matchmaker
> matchmaker #5 to #2/C pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain C (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence
alignment score = 741.7
Alignment identifier is 9
Showing conservation header ("seq_conservation" residue attribute) for
alignment 9
Hiding conservation header for alignment 9
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 9
RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs:
2.643)
> ui tool show Matchmaker
> matchmaker #6 to #2/D pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence
alignment score = 708.7
Alignment identifier is 10
Showing conservation header ("seq_conservation" residue attribute) for
alignment 10
Hiding conservation header for alignment 10
Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 10
RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs:
2.631)
> hide #4 models
> show #4 models
> select subtract #2
2963 atoms, 3019 bonds, 377 residues, 6 models selected
> select subtract #3
Nothing selected
> color #2 white
> color #3 #e10000ff
> color #3 #e11800ff
> color #4 #d0ec0aff
> color #5 #2aef17ff
> color #6 #03cbdbff
> color #7 #0019edff
> color #8 #fa00d7ff
> select add #7
2963 atoms, 3019 bonds, 377 residues, 1 model selected
> select add #2
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected
> hide #7 models
> hide #8 models
> show #7 models
> select subtract #2
2963 atoms, 3019 bonds, 377 residues, 6 models selected
> close #2
Chains used in RMSD evaluation for alignment 1:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Chains used in RMSD evaluation for alignment 2:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Chains used in RMSD evaluation for alignment 4:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Chains used in RMSD evaluation for alignment 6:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
> hide #7 models
> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb
F_actin_7bt7.pdb title:
F-actin-adp complex structure [more info...]
Chain information for F_actin_7bt7.pdb #2
---
Chain | Description | UniProt
A B C D E | α-actin-1 | ACTS_CHICK
Non-standard residues in F_actin_7bt7.pdb #2
---
ADP — adenosine-5'-diphosphate
MG — magnesium ion
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches
Chains used in RMSD evaluation for alignment 3:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/B
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0
mismatches
Chains used in RMSD evaluation for alignment 5:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/B
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0
mismatches
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches
Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain B with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain B with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain B with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain B with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain B with 0
mismatches
Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain C with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain C with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain C with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain C with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain C with 0
mismatches
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches
Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select add #2
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected
> select #2/A-E:367-374 #6/A:367-377
413 atoms, 418 bonds, 51 residues, 2 models selected
> select #2/A-E:338-374 #6/A:339-377
1769 atoms, 1811 bonds, 224 residues, 2 models selected
> select add #6
4423 atoms, 4514 bonds, 562 residues, 2 models selected
> select add #2
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected
> select subtract #6
14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected
> ui mousemode right "move picked models"
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,-124,0,1,0,-173.9,0,0,1,-141.37
> hide sel atoms
> show sel cartoons
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
> view matrix models #2,1,0,0,-90.945,0,1,0,-131.85,0,0,1,-137.05
> color #2 #e5ece8ff
> color #2 #f1f9f4ff
> color #2 #f7fffaff
> color #2 #f7fffa00
> color #2 #f7fffaff
> select subtract #2
Nothing selected
> hide #6 models
> show #6 models
> show #7 models
> select add #8
2963 atoms, 3019 bonds, 377 residues, 1 model selected
> hide #7 models
> show #7 models
> close #8
> select add #2
14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected
> ui tool show Matchmaker
> matchmaker #3 to #2/A pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain A (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 721.7
Alignment identifier is 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)
> ui tool show Matchmaker
> matchmaker #4 to #2/B pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain B (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence
alignment score = 713.3
Alignment identifier is 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Hiding conservation header for alignment 2
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs:
2.901)
> ui tool show Matchmaker
> matchmaker #5 to #2/C pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain C (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence
alignment score = 741.7
Alignment identifier is 3
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3
Hiding conservation header for alignment 3
Chains used in RMSD evaluation for alignment 3: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3
RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs:
2.643)
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A
> ui tool show Matchmaker
> matchmaker #6 to #2/D pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence
alignment score = 708.7
Alignment identifier is 4
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4
Hiding conservation header for alignment 4
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4
RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs:
2.631)
> ui tool show Matchmaker
> matchmaker #7 to #2/E pairing bs showAlignment true
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#7), sequence
alignment score = 696.3
Alignment identifier is 5
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5
Hiding conservation header for alignment 5
Chains used in RMSD evaluation for alignment 5: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5
RMSD between 222 pruned atom pairs is 1.120 angstroms; (across all 340 pairs:
2.989)
> select subtract #2
Nothing selected
> select add #2
14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected
> select add #7
17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected
> select add #6
20456 atoms, 20883 bonds, 9 pseudobonds, 2614 residues, 4 models selected
> select add #5
23419 atoms, 23902 bonds, 9 pseudobonds, 2991 residues, 5 models selected
> select add #4
26382 atoms, 26921 bonds, 9 pseudobonds, 3368 residues, 6 models selected
> select add #3
29345 atoms, 29940 bonds, 9 pseudobonds, 3745 residues, 7 models selected
> view matrix models
> #3,0.032526,-0.67509,-0.73702,15.775,0.86166,-0.35472,0.36294,-23.461,-0.50645,-0.64686,0.57016,-58.218,#4,0.17063,0.57515,0.80005,-10.514,-0.84733,0.50007,-0.17879,-14.57,-0.50292,-0.6474,0.57267,-30.732,#5,-0.3621,-0.44472,-0.81921,17.131,0.78555,-0.61869,-0.011364,-17.239,-0.50178,-0.64765,0.57338,-3.2428,#6,0.5308,0.28774,0.79716,-10.366,-0.68116,0.7045,0.19926,-20.99,-0.50426,-0.64876,0.56994,24.276,#7,-0.67155,-0.11804,-0.7315,15.504,0.5417,-0.75179,-0.376,-10.95,-0.50555,-0.64875,0.5688,51.721,#2,1,0,0,-166.44,0,1,0,-187.11,0,0,1,-176.44
> view matrix models
> #3,0.032526,-0.67509,-0.73702,34.59,0.86166,-0.35472,0.36294,-11.413,-0.50645,-0.64686,0.57016,-59.956,#4,0.17063,0.57515,0.80005,8.3008,-0.84733,0.50007,-0.17879,-2.5213,-0.50292,-0.6474,0.57267,-32.47,#5,-0.3621,-0.44472,-0.81921,35.946,0.78555,-0.61869,-0.011364,-5.1907,-0.50178,-0.64765,0.57338,-4.9807,#6,0.5308,0.28774,0.79716,8.4487,-0.68116,0.7045,0.19926,-8.9411,-0.50426,-0.64876,0.56994,22.538,#7,-0.67155,-0.11804,-0.7315,34.319,0.5417,-0.75179,-0.376,1.0984,-0.50555,-0.64875,0.5688,49.983,#2,1,0,0,-147.63,0,1,0,-175.06,0,0,1,-178.18
> view matrix models
> #3,0.032526,-0.67509,-0.73702,27.411,0.86166,-0.35472,0.36294,-16.032,-0.50645,-0.64686,0.57016,-59.44,#4,0.17063,0.57515,0.80005,1.1219,-0.84733,0.50007,-0.17879,-7.1404,-0.50292,-0.6474,0.57267,-31.954,#5,-0.3621,-0.44472,-0.81921,28.767,0.78555,-0.61869,-0.011364,-9.8098,-0.50178,-0.64765,0.57338,-4.4647,#6,0.5308,0.28774,0.79716,1.2697,-0.68116,0.7045,0.19926,-13.56,-0.50426,-0.64876,0.56994,23.054,#7,-0.67155,-0.11804,-0.7315,27.14,0.5417,-0.75179,-0.376,-3.5207,-0.50555,-0.64875,0.5688,50.499,#2,1,0,0,-154.81,0,1,0,-179.68,0,0,1,-177.66
> select subtract #2
14815 atoms, 15095 bonds, 1885 residues, 5 models selected
> select subtract #3
11852 atoms, 12076 bonds, 1508 residues, 4 models selected
> select subtract #4
8889 atoms, 9057 bonds, 1131 residues, 3 models selected
> select subtract #5
5926 atoms, 6038 bonds, 754 residues, 2 models selected
> select subtract #6
2963 atoms, 3019 bonds, 377 residues, 1 model selected
> select subtract #7
Nothing selected
> save /Users/corinahadjicharalambous/F_actin_Uact_overlay.cxs includeMaps
> true
> save /Users/corinahadjicharalambous/F_actin_Uact_overlay.jpg width 1111
> height 1108 supersample 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5 (2022-11-24)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.4.17
OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac19,1
Processor Name: 6-Core Intel Core i5
Processor Speed: 3.7 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Memory: 16 GB
System Firmware Version: 1554.100.64.0.0
SMC Version (system): 2.46f12
Software:
System Software Overview:
System Version: macOS 11.3 (20E232)
Kernel Version: Darwin 20.4.0
Time since boot: 2:52
Graphics/Displays:
Radeon Pro 580X:
Chipset Model: Radeon Pro 580X
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x67df
Revision ID: 0x00c0
ROM Revision: 113-D0008A-042
VBIOS Version: 113-D0008A1X-009
EFI Driver Version: 01.B1.042
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 5120 x 2880 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
U2777B:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 30.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in event loop possibly saving large image |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
Note:
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I'd guess it is an Apple Intel graphics driver crash. The image being saved is not very large (1111 by 1108 with supersample 3). C++ stack trace has no symbols.