Opened 3 years ago
Closed 3 years ago
#8186 closed defect (can't reproduce)
Crash in event loop possibly saving large image
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Thread 0x000070001b519000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x000070001a516000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x0000700019513000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x0000700018510000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x000070001750d000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x000070001650a000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x0000700015507000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x0000700014504000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x0000700013501000 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap Current thread 0x00000001179e1e00 (most recent call first): File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main Process: ChimeraX [52167] Path: /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.5.0 (1.5.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [52167] User ID: 502 Date/Time: 2022-12-14 11:59:39.691 +0100 OS Version: macOS 11.3 (20E232) Report Version: 12 Anonymous UUID: 10611757-CD53-5AC6-82E2-2F52DAFCD8C6 Time Awake Since Boot: 1200000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_MEMORY_ERROR at 0x0000000129f322b0 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x129f322b0: shared memory 129f08000-129f18000 [ 64K] r--/r-- SM=SHM --> mapped file 129f18000-129fb8000 [ 640K] r-x/rwx SM=COW Object_id=d6257e75 mapped file 129fb8000-129fc8000 [ 64K] rw-/rwx SM=COW Object_id=d2d9ca75 Thread 0 Crashed:: CrBrowserMain 0 ??? 0x00007fff20349946 0 + 140733733706054 1 ??? 0x00007fff2025cbe5 0 + 140733732735973 2 ??? 0x00007fff203bdd7d 0 + 140733734182269 3 ChimeraX 000000000000000000 0 + 0 4 ??? 0x00007fff20470cd5 0 + 140733734915285 5 ??? 0x00007fff20470496 0 + 140733734913174 6 ??? 0x00007fff2046f75c 0 + 140733734909788 7 ??? 0x00007fff28691203 0 + 140733871362563 8 ??? 0x00007fff28690f65 0 + 140733871361893 9 ??? 0x00007fff28690d03 0 + 140733871361283 10 ??? 0x00007fff22c6bb32 0 + 140733776837426 11 ??? 0x00007fff22c6a305 0 + 140733776831237 12 ??? 0x00007fff22c5c679 0 + 140733776774777 13 ??? 0x0000000129f310ac 0 + 4998762668 14 ??? 0x0000000116752326 0 + 4671742758 15 ??? 0x0000000116749235 0 + 4671705653 16 ??? 0x0000000116f45d9a 0 + 4680080794 17 ??? 0x0000000108d9b71d 0 + 4443453213 18 ??? 0x0000000108d5c5b7 0 + 4443194807 19 ??? 0x0000000108e34e9c 0 + 4444081820 20 ??? 0x0000000108e322a2 0 + 4444070562 21 ??? 0x0000000108d5cd28 0 + 4443196712 22 ??? 0x0000000108d5ed6a 0 + 4443204970 23 ??? 0x0000000108e34e0c 0 + 4444081676 24 ??? 0x0000000108e322a2 0 + 4444070562 25 ??? 0x0000000108e35b03 0 + 4444084995 26 ??? 0x0000000108d5ccb1 0 + 4443196593 27 ??? 0x0000000108e34e0c 0 + 4444081676 28 ??? 0x0000000108e3234b 0 + 4444070731 29 ??? 0x0000000108e35b03 0 + 4444084995 30 ??? 0x0000000108e2bdab 0 + 4444044715 31 ??? 0x0000000108e28c12 0 + 4444032018 32 ??? 0x0000000108d9b023 0 + 4443451427 33 ??? 0x0000000108e34e0c 0 + 4444081676 34 ??? 0x0000000108e3234b 0 + 4444070731 35 ??? 0x0000000108e35b03 0 + 4444084995 36 ??? 0x0000000108d5ccb1 0 + 4443196593 37 ??? 0x0000000108e34e0c 0 + 4444081676 38 ??? 0x0000000108e3234b 0 + 4444070731 39 ??? 0x0000000108e35b03 0 + 4444084995 40 ??? 0x0000000108d5ccb1 0 + 4443196593 41 ??? 0x0000000108e9b870 0 + 4444502128 42 ??? 0x0000000108e9af87 0 + 4444499847 43 ??? 0x0000000108e9b58f 0 + 4444501391 44 ??? 0x0000000108e9b49b 0 + 4444501147 45 ??? 0x0000000108d0ddc8 0 + 4442873288 46 ??? 0x00007fff20393f3d 0 + 140733734010685 Thread 1:: ThreadPoolServiceThread 0 ??? 0x00007fff2034c1ea 0 + 140733733716458 1 ??? 0x0000000122514927 0 + 4870719783 2 ??? 0x0000000122491a5c 0 + 4870183516 3 ??? 0x0000000122449998 0 + 4869888408 4 ??? 0x00000001224b3eb8 0 + 4870323896 5 ??? 0x000000012249b2ad 0 + 4870222509 6 ??? 0x00000001224b404a 0 + 4870324298 7 ??? 0x00000001224db908 0 + 4870486280 8 ??? 0x00007fff20378954 0 + 140733733898580 9 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 2:: ThreadPoolBackgroundWorker 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224a77bf 0 + 4870272959 4 ??? 0x00000001224a826c 0 + 4870275692 5 ??? 0x00000001224a7ddd 0 + 4870274525 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 3:: Chrome_IOThread 0 ??? 0x00007fff2034c1ea 0 + 140733733716458 1 ??? 0x0000000122514927 0 + 4870719783 2 ??? 0x0000000122491a5c 0 + 4870183516 3 ??? 0x0000000122449998 0 + 4869888408 4 ??? 0x00000001224b3eb8 0 + 4870323896 5 ??? 0x00000001213d93a2 0 + 4852650914 6 ??? 0x00000001224b404a 0 + 4870324298 7 ??? 0x00000001224db908 0 + 4870486280 8 ??? 0x00007fff20378954 0 + 140733733898580 9 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 4:: NetworkConfigWatcher 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 5:: ThreadPoolForegroundWorker 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224a77bf 0 + 4870272959 4 ??? 0x00000001224a826c 0 + 4870275692 5 ??? 0x00000001224a7e6d 0 + 4870274669 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 6:: CompositorTileWorker1 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x00000001224dad1b 0 + 4870483227 2 ??? 0x00000001245a892d 0 + 4904880429 3 ??? 0x00000001224db908 0 + 4870486280 4 ??? 0x00007fff20378954 0 + 140733733898580 5 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 7:: Chrome_InProcGpuThread 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 8:: Chrome_ChildIOThread 0 ??? 0x00007fff2034c1ea 0 + 140733733716458 1 ??? 0x0000000122514927 0 + 4870719783 2 ??? 0x0000000122491a5c 0 + 4870183516 3 ??? 0x0000000122449998 0 + 4869888408 4 ??? 0x00000001224b3eb8 0 + 4870323896 5 ??? 0x00000001224b404a 0 + 4870324298 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 9:: VizCompositorThread 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 10:: NetworkConfigWatcher 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 11:: NetworkService 0 ??? 0x00007fff2034c1ea 0 + 140733733716458 1 ??? 0x0000000122514927 0 + 4870719783 2 ??? 0x0000000122491a5c 0 + 4870183516 3 ??? 0x0000000122449998 0 + 4869888408 4 ??? 0x00000001224b3eb8 0 + 4870323896 5 ??? 0x00000001224b404a 0 + 4870324298 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 12:: NetworkConfigWatcher 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 13:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224a77bf 0 + 4870272959 4 ??? 0x00000001224a826c 0 + 4870275692 5 ??? 0x00000001224a7ecd 0 + 4870274765 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 14:: NetworkConfigWatcher 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 15: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 16: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 17: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 18: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 19: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 20: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108e35b03 0 + 4444084995 8 ??? 0x0000000108d5ccb1 0 + 4443196593 9 ??? 0x0000000108e32989 0 + 4444072329 10 ??? 0x0000000108d5cd28 0 + 4443196712 11 ??? 0x0000000108e34e0c 0 + 4444081676 12 ??? 0x0000000108e3227e 0 + 4444070526 13 ??? 0x0000000108d5cd28 0 + 4443196712 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e3227e 0 + 4444070526 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5edb2 0 + 4443205042 18 ??? 0x0000000108eda046 0 + 4444758086 19 ??? 0x0000000108e8b2f9 0 + 4444435193 20 ??? 0x00007fff20378954 0 + 140733733898580 21 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 21: 0 ??? 0x00007fff203499e2 0 + 140733733706210 1 ??? 0x0000000108d65306 0 + 4443230982 2 ??? 0x0000000108e34e0c 0 + 4444081676 3 ??? 0x0000000108e3227e 0 + 4444070526 4 ??? 0x0000000108e35b03 0 + 4444084995 5 ??? 0x0000000108d5ccb1 0 + 4443196593 6 ??? 0x0000000108e34e0c 0 + 4444081676 7 ??? 0x0000000108e3227e 0 + 4444070526 8 ??? 0x0000000108e35b03 0 + 4444084995 9 ??? 0x0000000108d5ccb1 0 + 4443196593 10 ??? 0x0000000108e34e0c 0 + 4444081676 11 ??? 0x0000000108e323e8 0 + 4444070888 12 ??? 0x0000000108e35b03 0 + 4444084995 13 ??? 0x0000000108d5ccb1 0 + 4443196593 14 ??? 0x0000000108e34e0c 0 + 4444081676 15 ??? 0x0000000108e322a2 0 + 4444070562 16 ??? 0x0000000108d5cd28 0 + 4443196712 17 ??? 0x0000000108d5ee59 0 + 4443205209 18 ??? 0x0000000108e32989 0 + 4444072329 19 ??? 0x0000000108d5cd28 0 + 4443196712 20 ??? 0x0000000108e34e0c 0 + 4444081676 21 ??? 0x0000000108e3227e 0 + 4444070526 22 ??? 0x0000000108d5cd28 0 + 4443196712 23 ??? 0x0000000108e34e0c 0 + 4444081676 24 ??? 0x0000000108e3227e 0 + 4444070526 25 ??? 0x0000000108d5cd28 0 + 4443196712 26 ??? 0x0000000108d5edb2 0 + 4443205042 27 ??? 0x0000000108eda046 0 + 4444758086 28 ??? 0x0000000108e8b2f9 0 + 4444435193 29 ??? 0x00007fff20378954 0 + 140733733898580 30 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 22: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108d78c5a 0 + 4443311194 6 ??? 0x0000000108e31bbe 0 + 4444068798 7 ??? 0x0000000108d5cd28 0 + 4443196712 8 ??? 0x0000000108e32989 0 + 4444072329 9 ??? 0x0000000108d5cd28 0 + 4443196712 10 ??? 0x0000000108e34e0c 0 + 4444081676 11 ??? 0x0000000108e3227e 0 + 4444070526 12 ??? 0x0000000108d5cd28 0 + 4443196712 13 ??? 0x0000000108e34e0c 0 + 4444081676 14 ??? 0x0000000108e3227e 0 + 4444070526 15 ??? 0x0000000108d5cd28 0 + 4443196712 16 ??? 0x0000000108d5edb2 0 + 4443205042 17 ??? 0x0000000108eda046 0 + 4444758086 18 ??? 0x0000000108e8b2f9 0 + 4444435193 19 ??? 0x00007fff20378954 0 + 140733733898580 20 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 23: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000108e8b6a6 0 + 4444436134 2 ??? 0x000000012b32457e 0 + 5019682174 3 ??? 0x000000012b324126 0 + 5019681062 4 ??? 0x0000000108d9b0bd 0 + 4443451581 5 ??? 0x0000000108e34e0c 0 + 4444081676 6 ??? 0x0000000108e3234b 0 + 4444070731 7 ??? 0x0000000108d5cd28 0 + 4443196712 8 ??? 0x0000000108e32989 0 + 4444072329 9 ??? 0x0000000108d5cd28 0 + 4443196712 10 ??? 0x0000000108e34e0c 0 + 4444081676 11 ??? 0x0000000108e3227e 0 + 4444070526 12 ??? 0x0000000108d5cd28 0 + 4443196712 13 ??? 0x0000000108e34e0c 0 + 4444081676 14 ??? 0x0000000108e3227e 0 + 4444070526 15 ??? 0x0000000108d5cd28 0 + 4443196712 16 ??? 0x0000000108d5edb2 0 + 4443205042 17 ??? 0x0000000108eda046 0 + 4444758086 18 ??? 0x0000000108e8b2f9 0 + 4444435193 19 ??? 0x00007fff20378954 0 + 140733733898580 20 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 24:: com.apple.NSEventThread 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00007fff20471c6f 0 + 140733734919279 3 ??? 0x00007fff2047034f 0 + 140733734912847 4 ??? 0x00007fff2046f75c 0 + 140733734909788 5 ??? 0x00007fff22df1baa 0 + 140733778434986 6 ??? 0x00007fff20378954 0 + 140733733898580 7 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 25:: MemoryInfra 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224e2bef 0 + 4870515695 4 ??? 0x00000001224181c9 0 + 4869685705 5 ??? 0x0000000122491a5c 0 + 4870183516 6 ??? 0x0000000122449998 0 + 4869888408 7 ??? 0x00000001224b3eb8 0 + 4870323896 8 ??? 0x00000001224b404a 0 + 4870324298 9 ??? 0x00000001224db908 0 + 4870486280 10 ??? 0x00007fff20378954 0 + 140733733898580 11 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 26:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224a77bf 0 + 4870272959 4 ??? 0x00000001224a7f9a 0 + 4870274970 5 ??? 0x00000001224a7e0d 0 + 4870274573 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 27: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000109c9c23f 0 + 4459184703 2 ??? 0x00007fff20378954 0 + 140733733898580 3 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 28: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000109c9c23f 0 + 4459184703 2 ??? 0x00007fff20378954 0 + 140733733898580 3 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 29: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000109c9c23f 0 + 4459184703 2 ??? 0x00007fff20378954 0 + 140733733898580 3 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 30: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000109c9c23f 0 + 4459184703 2 ??? 0x00007fff20378954 0 + 140733733898580 3 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 31: 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x0000000109c9c23f 0 + 4459184703 2 ??? 0x00007fff20378954 0 + 140733733898580 3 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 32:: QFileInfoGatherer 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x00000001168dd8eb 0 + 4673362155 2 ??? 0x00000001168dd85e 0 + 4673362014 3 ??? 0x000000011e231e0d 0 + 4800585229 4 ??? 0x00000001168d3663 0 + 4673320547 5 ??? 0x00007fff20378954 0 + 140733733898580 6 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 33: 0 ??? 0x00007fff20374484 0 + 140733733880964 Thread 34: 0 ??? 0x00007fff20374484 0 + 140733733880964 Thread 35: 0 ??? 0x00007fff20374484 0 + 140733733880964 Thread 36: 0 ??? 0x00007fff20374484 0 + 140733733880964 Thread 37:: ThreadPoolForegroundWorker 0 ??? 0x00007fff2034332a 0 + 140733733679914 1 ??? 0x00007fff2034369c 0 + 140733733680796 2 ??? 0x00000001224e2e26 0 + 4870516262 3 ??? 0x00000001224a77bf 0 + 4870272959 4 ??? 0x00000001224a7f9a 0 + 4870274970 5 ??? 0x00000001224a7e6d 0 + 4870274669 6 ??? 0x00000001224db908 0 + 4870486280 7 ??? 0x00007fff20378954 0 + 140733733898580 8 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 38:: QFileInfoGatherer 0 ??? 0x00007fff20345d4e 0 + 140733733690702 1 ??? 0x00000001168dd8eb 0 + 4673362155 2 ??? 0x00000001168dd85e 0 + 4673362014 3 ??? 0x000000011e231e0d 0 + 4800585229 4 ??? 0x00000001168d3663 0 + 4673320547 5 ??? 0x00007fff20378954 0 + 140733733898580 6 ??? 0x00007fff203744a7 0 + 140733733880999 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001179e1e00 rcx: 0x00007f9df9955a58 rdx: 0x0000000000000000 rdi: 0x0000000000000103 rsi: 0x000000000000000a rbp: 0x00007f9df9955a80 rsp: 0x00007f9df9955a58 r8: 0x00007f9df9955f48 r9: 0xd690c31b5bdb0fd1 r10: 0x00000001179e1e00 r11: 0x0000000000000246 r12: 0x0000000000000103 r13: 0x0000600002600be0 r14: 0x000000000000000a r15: 0x0000000000000016 rip: 0x00007fff20349946 rfl: 0x0000000000000246 cr2: 0x00007f9df9ec90e0 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream not available. Thread 0 last branch register state not available. Binary Images: 0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX 0x11790a000 - 0x1179a5fff dyld (851.27) /usr/lib/dyld External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=852K resident=0K(0%) swapped_out_or_unallocated=852K(100%) Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 9.8M 12 CG image 1540K 48 CoreAnimation 2316K 108 CoreGraphics 16K 3 CoreServices 624K 2 CoreUI image data 5140K 43 Foundation 40K 2 Kernel Alloc Once 1316K 4 MALLOC 1.1G 1246 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 16K 3 OpenGL GLSL 384K 4 STACK GUARD 152K 38 Stack 294.3M 39 Stack Guard 56.0M 1 VM_ALLOCATE 259.9M 256 VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated) __DATA 224K 2 __DATA_CONST 32K 1 __LINKEDIT 240K 2 __TEXT 624K 1 dylib 3692K 18 dylib (reserved) 916K 115 reserved VM address space (unallocated) mapped file 640.5M 498 shared memory 4520K 35 =========== ======= ======= TOTAL 2.8G 2498 TOTAL, minus reserved VM space 2.4G 2498 ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb Chain information for bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb #1 --- Chain | Description A | No description available > show cartoons > hide #1 models > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb F_actin_7bt7.pdb title: F-actin-adp complex structure [more info...] Chain information for F_actin_7bt7.pdb #2 --- Chain | Description | UniProt A B C D E | α-actin-1 | ACTS_CHICK Non-standard residues in F_actin_7bt7.pdb #2 --- ADP — adenosine-5'-diphosphate MG — magnesium ion > show #!2 atoms > style #!2 sphere Changed 14530 atom styles > style #!2 ball Changed 14530 atom styles > style #!2 stick Changed 14530 atom styles > ui tool show "Selection Inspector" > rainbow #!2 > color #!2 bypolymer > rainbow #!2 > color #!2 byhetero > show #!2 surfaces > hide #!2 surfaces > hide #!2 cartoons > show #!2 cartoons > lighting full > lighting soft > lighting simple > view clip false > style #!2 stick Changed 14530 atom styles > style #!2 stick Changed 14530 atom styles > style #!2 sphere Changed 14530 atom styles > style #!2 sphere Changed 14530 atom styles > style #!2 ball Changed 14530 atom styles > show #!2 cartoons > hide #!2 cartoons > hide #!2 atoms > style #!2 sphere Changed 14530 atom styles > show #!2 cartoons > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3 --- Chain | Description A | No description available > view #3 clip false > show #3 target m > show #!2 target m > mmaker #2 to #3 showAlignment true Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7 Alignment identifier is 1 Showing conservation header ("seq_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs: 3.864) Drag select of 5 residues > select add #2 14554 atoms, 14845 bonds, 9 pseudobonds, 1863 residues, 4 models selected > select add #3 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected > select subtract #2 2963 atoms, 3019 bonds, 377 residues, 6 models selected > ui mousemode right "translate selected models" > view matrix models #3,1,0,0,-36.428,0,1,0,-36.184,0,0,1,64.784 > mmaker #2 to #3 showAlignment true Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7 Alignment identifier is 2 Showing conservation header ("seq_conservation" residue attribute) for alignment 2 Hiding conservation header for alignment 2 Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2 RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs: 3.864) > ui mousemode right "translate selected models" > hide #!2 models > show #!2 models > select subtract #3 Nothing selected > hide #!2 models > select add #2 14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected > show #!2 models > ui mousemode right "translate selected models" > view matrix models > #2,0.032526,0.86166,-0.50645,-96.449,-0.67509,-0.35472,-0.64686,253.62,-0.73702,0.36294,0.57016,-6.7561 > ui tool show Matchmaker > matchmaker #1,3 to #2/D pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain D (#2) with bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb, chain A (#1), sequence alignment score = 1208.2 Alignment identifier is 3 Showing conservation header ("seq_conservation" residue attribute) for alignment 3 Hiding conservation header for alignment 3 Chains used in RMSD evaluation for alignment 3: bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb #1/A, F_actin_7bt7.pdb #2/D Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3 RMSD between 345 pruned atom pairs is 0.760 angstroms; (across all 369 pairs: 1.349) Matchmaker F_actin_7bt7.pdb, chain D (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence alignment score = 704.8 Alignment identifier is 4 Showing conservation header ("seq_conservation" residue attribute) for alignment 4 Hiding conservation header for alignment 4 Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4 RMSD between 211 pruned atom pairs is 1.129 angstroms; (across all 346 pairs: 3.651) > select subtract #2 5 models selected > select add #3 2963 atoms, 3019 bonds, 377 residues, 1 model selected > select add #2 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected > ui mousemode right "translate selected models" > select subtract #2 2963 atoms, 3019 bonds, 377 residues, 6 models selected > ui tool show Matchmaker > show #1 models > hide #3 models > show #3 models > hide #3 models > show #3 models > hide #3 models > hide #1 models > show #3 models > matchmaker #1,3 to #2/E pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain E (#2) with bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb, chain A (#1), sequence alignment score = 1141 Alignment identifier is 5 Showing conservation header ("seq_conservation" residue attribute) for alignment 5 Hiding conservation header for alignment 5 Chains used in RMSD evaluation for alignment 5: bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb #1/A, F_actin_7bt7.pdb #2/E Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5 RMSD between 348 pruned atom pairs is 0.782 angstroms; (across all 369 pairs: 1.301) Matchmaker F_actin_7bt7.pdb, chain E (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence alignment score = 695.2 Alignment identifier is 6 Showing conservation header ("seq_conservation" residue attribute) for alignment 6 Hiding conservation header for alignment 6 Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6 RMSD between 220 pruned atom pairs is 1.119 angstroms; (across all 348 pairs: 3.650) > select subtract #3 Nothing selected > select add #2 14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected > select add #3 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected > ui mousemode right "rotate selected models" > ui mousemode right "translate selected models" > ui mousemode right "move picked models" > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4 --- Chain | Description A | No description available Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5 --- Chain | Description A | No description available Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6 --- Chain | Description A | No description available Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7 --- Chain | Description A | No description available Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8 --- Chain | Description A | No description available Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A > ui tool show Matchmaker > matchmaker #3 to #2/A pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain A (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence alignment score = 721.7 Alignment identifier is 7 Showing conservation header ("seq_conservation" residue attribute) for alignment 7 Hiding conservation header for alignment 7 Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 7 RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs: 3.864) > ui tool show Matchmaker > matchmaker #4 to #2/B pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain B (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence alignment score = 713.3 Alignment identifier is 8 Showing conservation header ("seq_conservation" residue attribute) for alignment 8 Hiding conservation header for alignment 8 Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 8 RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs: 2.901) > ui tool show Matchmaker > matchmaker #5 to #2/C pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain C (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence alignment score = 741.7 Alignment identifier is 9 Showing conservation header ("seq_conservation" residue attribute) for alignment 9 Hiding conservation header for alignment 9 Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 9 RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs: 2.643) > ui tool show Matchmaker > matchmaker #6 to #2/D pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain D (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence alignment score = 708.7 Alignment identifier is 10 Showing conservation header ("seq_conservation" residue attribute) for alignment 10 Hiding conservation header for alignment 10 Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 10 RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs: 2.631) > hide #4 models > show #4 models > select subtract #2 2963 atoms, 3019 bonds, 377 residues, 6 models selected > select subtract #3 Nothing selected > color #2 white > color #3 #e10000ff > color #3 #e11800ff > color #4 #d0ec0aff > color #5 #2aef17ff > color #6 #03cbdbff > color #7 #0019edff > color #8 #fa00d7ff > select add #7 2963 atoms, 3019 bonds, 377 residues, 1 model selected > select add #2 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected > hide #7 models > hide #8 models > show #7 models > select subtract #2 2963 atoms, 3019 bonds, 377 residues, 6 models selected > close #2 Chains used in RMSD evaluation for alignment 1: Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Chains used in RMSD evaluation for alignment 2: Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Chains used in RMSD evaluation for alignment 4: Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Chains used in RMSD evaluation for alignment 6: Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A > hide #7 models > open > /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb F_actin_7bt7.pdb title: F-actin-adp complex structure [more info...] Chain information for F_actin_7bt7.pdb #2 --- Chain | Description | UniProt A B C D E | α-actin-1 | ACTS_CHICK Non-standard residues in F_actin_7bt7.pdb #2 --- ADP — adenosine-5'-diphosphate MG — magnesium ion Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0 mismatches Chains used in RMSD evaluation for alignment 3: bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb #1/A, F_actin_7bt7.pdb #2/B Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0 mismatches Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0 mismatches Chains used in RMSD evaluation for alignment 5: bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb #1/A, F_actin_7bt7.pdb #2/B Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0 mismatches Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain B with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain B with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain B with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain B with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain B with 0 mismatches Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain C with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain C with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain C with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain C with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain C with 0 mismatches Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0 mismatches Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0 mismatches Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select add #2 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected > select #2/A-E:367-374 #6/A:367-377 413 atoms, 418 bonds, 51 residues, 2 models selected > select #2/A-E:338-374 #6/A:339-377 1769 atoms, 1811 bonds, 224 residues, 2 models selected > select add #6 4423 atoms, 4514 bonds, 562 residues, 2 models selected > select add #2 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected > select subtract #6 14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected > ui mousemode right "move picked models" > ui mousemode right "translate selected models" > view matrix models #2,1,0,0,-124,0,1,0,-173.9,0,0,1,-141.37 > hide sel atoms > show sel cartoons Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A > view matrix models #2,1,0,0,-90.945,0,1,0,-131.85,0,0,1,-137.05 > color #2 #e5ece8ff > color #2 #f1f9f4ff > color #2 #f7fffaff > color #2 #f7fffa00 > color #2 #f7fffaff > select subtract #2 Nothing selected > hide #6 models > show #6 models > show #7 models > select add #8 2963 atoms, 3019 bonds, 377 residues, 1 model selected > hide #7 models > show #7 models > close #8 > select add #2 14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected > ui tool show Matchmaker > matchmaker #3 to #2/A pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain A (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence alignment score = 721.7 Alignment identifier is 1 Showing conservation header ("seq_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs: 3.864) > ui tool show Matchmaker > matchmaker #4 to #2/B pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain B (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence alignment score = 713.3 Alignment identifier is 2 Showing conservation header ("seq_conservation" residue attribute) for alignment 2 Hiding conservation header for alignment 2 Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2 RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs: 2.901) > ui tool show Matchmaker > matchmaker #5 to #2/C pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain C (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence alignment score = 741.7 Alignment identifier is 3 Showing conservation header ("seq_conservation" residue attribute) for alignment 3 Hiding conservation header for alignment 3 Chains used in RMSD evaluation for alignment 3: F_actin_7bt7.pdb #2/C, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3 RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs: 2.643) Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A > ui tool show Matchmaker > matchmaker #6 to #2/D pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain D (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence alignment score = 708.7 Alignment identifier is 4 Showing conservation header ("seq_conservation" residue attribute) for alignment 4 Hiding conservation header for alignment 4 Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4 RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs: 2.631) > ui tool show Matchmaker > matchmaker #7 to #2/E pairing bs showAlignment true Parameters --- Chain pairing | bs Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker F_actin_7bt7.pdb, chain E (#2) with Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#7), sequence alignment score = 696.3 Alignment identifier is 5 Showing conservation header ("seq_conservation" residue attribute) for alignment 5 Hiding conservation header for alignment 5 Chains used in RMSD evaluation for alignment 5: F_actin_7bt7.pdb #2/E, Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5 RMSD between 222 pruned atom pairs is 1.120 angstroms; (across all 340 pairs: 2.989) > select subtract #2 Nothing selected > select add #2 14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected > select add #7 17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected > select add #6 20456 atoms, 20883 bonds, 9 pseudobonds, 2614 residues, 4 models selected > select add #5 23419 atoms, 23902 bonds, 9 pseudobonds, 2991 residues, 5 models selected > select add #4 26382 atoms, 26921 bonds, 9 pseudobonds, 3368 residues, 6 models selected > select add #3 29345 atoms, 29940 bonds, 9 pseudobonds, 3745 residues, 7 models selected > view matrix models > #3,0.032526,-0.67509,-0.73702,15.775,0.86166,-0.35472,0.36294,-23.461,-0.50645,-0.64686,0.57016,-58.218,#4,0.17063,0.57515,0.80005,-10.514,-0.84733,0.50007,-0.17879,-14.57,-0.50292,-0.6474,0.57267,-30.732,#5,-0.3621,-0.44472,-0.81921,17.131,0.78555,-0.61869,-0.011364,-17.239,-0.50178,-0.64765,0.57338,-3.2428,#6,0.5308,0.28774,0.79716,-10.366,-0.68116,0.7045,0.19926,-20.99,-0.50426,-0.64876,0.56994,24.276,#7,-0.67155,-0.11804,-0.7315,15.504,0.5417,-0.75179,-0.376,-10.95,-0.50555,-0.64875,0.5688,51.721,#2,1,0,0,-166.44,0,1,0,-187.11,0,0,1,-176.44 > view matrix models > #3,0.032526,-0.67509,-0.73702,34.59,0.86166,-0.35472,0.36294,-11.413,-0.50645,-0.64686,0.57016,-59.956,#4,0.17063,0.57515,0.80005,8.3008,-0.84733,0.50007,-0.17879,-2.5213,-0.50292,-0.6474,0.57267,-32.47,#5,-0.3621,-0.44472,-0.81921,35.946,0.78555,-0.61869,-0.011364,-5.1907,-0.50178,-0.64765,0.57338,-4.9807,#6,0.5308,0.28774,0.79716,8.4487,-0.68116,0.7045,0.19926,-8.9411,-0.50426,-0.64876,0.56994,22.538,#7,-0.67155,-0.11804,-0.7315,34.319,0.5417,-0.75179,-0.376,1.0984,-0.50555,-0.64875,0.5688,49.983,#2,1,0,0,-147.63,0,1,0,-175.06,0,0,1,-178.18 > view matrix models > #3,0.032526,-0.67509,-0.73702,27.411,0.86166,-0.35472,0.36294,-16.032,-0.50645,-0.64686,0.57016,-59.44,#4,0.17063,0.57515,0.80005,1.1219,-0.84733,0.50007,-0.17879,-7.1404,-0.50292,-0.6474,0.57267,-31.954,#5,-0.3621,-0.44472,-0.81921,28.767,0.78555,-0.61869,-0.011364,-9.8098,-0.50178,-0.64765,0.57338,-4.4647,#6,0.5308,0.28774,0.79716,1.2697,-0.68116,0.7045,0.19926,-13.56,-0.50426,-0.64876,0.56994,23.054,#7,-0.67155,-0.11804,-0.7315,27.14,0.5417,-0.75179,-0.376,-3.5207,-0.50555,-0.64875,0.5688,50.499,#2,1,0,0,-154.81,0,1,0,-179.68,0,0,1,-177.66 > select subtract #2 14815 atoms, 15095 bonds, 1885 residues, 5 models selected > select subtract #3 11852 atoms, 12076 bonds, 1508 residues, 4 models selected > select subtract #4 8889 atoms, 9057 bonds, 1131 residues, 3 models selected > select subtract #5 5926 atoms, 6038 bonds, 754 residues, 2 models selected > select subtract #6 2963 atoms, 3019 bonds, 377 residues, 1 model selected > select subtract #7 Nothing selected > save /Users/corinahadjicharalambous/F_actin_Uact_overlay.cxs includeMaps > true > save /Users/corinahadjicharalambous/F_actin_Uact_overlay.jpg width 1111 > height 1108 supersample 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.4.17 OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: 6-Core Intel Core i5 Processor Speed: 3.7 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Memory: 16 GB System Firmware Version: 1554.100.64.0.0 SMC Version (system): 2.46f12 Software: System Software Overview: System Version: macOS 11.3 (20E232) Kernel Version: Darwin 20.4.0 Time since boot: 2:52 Graphics/Displays: Radeon Pro 580X: Chipset Model: Radeon Pro 580X Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D0008A-042 VBIOS Version: 113-D0008A1X-009 EFI Driver Version: 01.B1.042 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal U2777B: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 30.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: Thunderbolt/DisplayPort Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.1.0 Babel: 2.11.0 backcall: 0.2.0 blockdiag: 3.0.0 build: 0.8.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2022.6 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 requests: 2.28.1 scipy: 1.9.0 setuptools: 65.1.1 setuptools-scm: 7.0.5 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 typing-extensions: 4.4.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 zipp: 3.11.0
Change History (2)
comment:1 by , 3 years ago
Component: | Unassigned → Input/Output |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Crash in event loop possibly saving large image |
comment:2 by , 3 years ago
Resolution: | → can't reproduce |
---|---|
Status: | assigned → closed |
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I'd guess it is an Apple Intel graphics driver crash. The image being saved is not very large (1111 by 1108 with supersample 3). C++ stack trace has no symbols.