Opened 3 years ago

Closed 3 years ago

#8186 closed defect (can't reproduce)

Crash in event loop possibly saving large image

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error

Thread 0x000070001b519000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001a516000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700019513000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700018510000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001750d000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000070001650a000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700015507000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700014504000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x0000700013501000 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Current thread 0x00000001179e1e00 (most recent call first):
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in 
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/private/var/folders/3h/pkz3gnjj7278j6tk_6649bhw0000gp/T/AppTranslocation/BE23916F-B4EB-49C3-9F61-F4D828E8D2D0/d/ChimeraX-1.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


Process:               ChimeraX [52167]
Path:                  /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
Identifier:            edu.ucsf.cgl.ChimeraX
Version:               1.5.0 (1.5.0.0)
Code Type:             X86-64 (Native)
Parent Process:        ??? [1]
Responsible:           ChimeraX [52167]
User ID:               502

Date/Time:             2022-12-14 11:59:39.691 +0100
OS Version:            macOS 11.3 (20E232)
Report Version:        12
Anonymous UUID:        10611757-CD53-5AC6-82E2-2F52DAFCD8C6


Time Awake Since Boot: 1200000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  CrBrowserMain

Exception Type:        EXC_BAD_ACCESS (SIGBUS)
Exception Codes:       KERN_MEMORY_ERROR at 0x0000000129f322b0
Exception Note:        EXC_CORPSE_NOTIFY

VM Regions Near 0x129f322b0:
    shared memory               129f08000-129f18000    [   64K] r--/r-- SM=SHM  
--> mapped file                 129f18000-129fb8000    [  640K] r-x/rwx SM=COW  Object_id=d6257e75
    mapped file                 129fb8000-129fc8000    [   64K] rw-/rwx SM=COW  Object_id=d2d9ca75

Thread 0 Crashed:: CrBrowserMain
0   ???                           	0x00007fff20349946 0 + 140733733706054
1   ???                           	0x00007fff2025cbe5 0 + 140733732735973
2   ???                           	0x00007fff203bdd7d 0 + 140733734182269
3   ChimeraX                      	000000000000000000 0 + 0
4   ???                           	0x00007fff20470cd5 0 + 140733734915285
5   ???                           	0x00007fff20470496 0 + 140733734913174
6   ???                           	0x00007fff2046f75c 0 + 140733734909788
7   ???                           	0x00007fff28691203 0 + 140733871362563
8   ???                           	0x00007fff28690f65 0 + 140733871361893
9   ???                           	0x00007fff28690d03 0 + 140733871361283
10  ???                           	0x00007fff22c6bb32 0 + 140733776837426
11  ???                           	0x00007fff22c6a305 0 + 140733776831237
12  ???                           	0x00007fff22c5c679 0 + 140733776774777
13  ???                           	0x0000000129f310ac 0 + 4998762668
14  ???                           	0x0000000116752326 0 + 4671742758
15  ???                           	0x0000000116749235 0 + 4671705653
16  ???                           	0x0000000116f45d9a 0 + 4680080794
17  ???                           	0x0000000108d9b71d 0 + 4443453213
18  ???                           	0x0000000108d5c5b7 0 + 4443194807
19  ???                           	0x0000000108e34e9c 0 + 4444081820
20  ???                           	0x0000000108e322a2 0 + 4444070562
21  ???                           	0x0000000108d5cd28 0 + 4443196712
22  ???                           	0x0000000108d5ed6a 0 + 4443204970
23  ???                           	0x0000000108e34e0c 0 + 4444081676
24  ???                           	0x0000000108e322a2 0 + 4444070562
25  ???                           	0x0000000108e35b03 0 + 4444084995
26  ???                           	0x0000000108d5ccb1 0 + 4443196593
27  ???                           	0x0000000108e34e0c 0 + 4444081676
28  ???                           	0x0000000108e3234b 0 + 4444070731
29  ???                           	0x0000000108e35b03 0 + 4444084995
30  ???                           	0x0000000108e2bdab 0 + 4444044715
31  ???                           	0x0000000108e28c12 0 + 4444032018
32  ???                           	0x0000000108d9b023 0 + 4443451427
33  ???                           	0x0000000108e34e0c 0 + 4444081676
34  ???                           	0x0000000108e3234b 0 + 4444070731
35  ???                           	0x0000000108e35b03 0 + 4444084995
36  ???                           	0x0000000108d5ccb1 0 + 4443196593
37  ???                           	0x0000000108e34e0c 0 + 4444081676
38  ???                           	0x0000000108e3234b 0 + 4444070731
39  ???                           	0x0000000108e35b03 0 + 4444084995
40  ???                           	0x0000000108d5ccb1 0 + 4443196593
41  ???                           	0x0000000108e9b870 0 + 4444502128
42  ???                           	0x0000000108e9af87 0 + 4444499847
43  ???                           	0x0000000108e9b58f 0 + 4444501391
44  ???                           	0x0000000108e9b49b 0 + 4444501147
45  ???                           	0x0000000108d0ddc8 0 + 4442873288
46  ???                           	0x00007fff20393f3d 0 + 140733734010685

Thread 1:: ThreadPoolServiceThread
0   ???                           	0x00007fff2034c1ea 0 + 140733733716458
1   ???                           	0x0000000122514927 0 + 4870719783
2   ???                           	0x0000000122491a5c 0 + 4870183516
3   ???                           	0x0000000122449998 0 + 4869888408
4   ???                           	0x00000001224b3eb8 0 + 4870323896
5   ???                           	0x000000012249b2ad 0 + 4870222509
6   ???                           	0x00000001224b404a 0 + 4870324298
7   ???                           	0x00000001224db908 0 + 4870486280
8   ???                           	0x00007fff20378954 0 + 140733733898580
9   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 2:: ThreadPoolBackgroundWorker
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224a77bf 0 + 4870272959
4   ???                           	0x00000001224a826c 0 + 4870275692
5   ???                           	0x00000001224a7ddd 0 + 4870274525
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 3:: Chrome_IOThread
0   ???                           	0x00007fff2034c1ea 0 + 140733733716458
1   ???                           	0x0000000122514927 0 + 4870719783
2   ???                           	0x0000000122491a5c 0 + 4870183516
3   ???                           	0x0000000122449998 0 + 4869888408
4   ???                           	0x00000001224b3eb8 0 + 4870323896
5   ???                           	0x00000001213d93a2 0 + 4852650914
6   ???                           	0x00000001224b404a 0 + 4870324298
7   ???                           	0x00000001224db908 0 + 4870486280
8   ???                           	0x00007fff20378954 0 + 140733733898580
9   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 4:: NetworkConfigWatcher
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 5:: ThreadPoolForegroundWorker
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224a77bf 0 + 4870272959
4   ???                           	0x00000001224a826c 0 + 4870275692
5   ???                           	0x00000001224a7e6d 0 + 4870274669
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 6:: CompositorTileWorker1
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x00000001224dad1b 0 + 4870483227
2   ???                           	0x00000001245a892d 0 + 4904880429
3   ???                           	0x00000001224db908 0 + 4870486280
4   ???                           	0x00007fff20378954 0 + 140733733898580
5   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 7:: Chrome_InProcGpuThread
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 8:: Chrome_ChildIOThread
0   ???                           	0x00007fff2034c1ea 0 + 140733733716458
1   ???                           	0x0000000122514927 0 + 4870719783
2   ???                           	0x0000000122491a5c 0 + 4870183516
3   ???                           	0x0000000122449998 0 + 4869888408
4   ???                           	0x00000001224b3eb8 0 + 4870323896
5   ???                           	0x00000001224b404a 0 + 4870324298
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 9:: VizCompositorThread
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 10:: NetworkConfigWatcher
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 11:: NetworkService
0   ???                           	0x00007fff2034c1ea 0 + 140733733716458
1   ???                           	0x0000000122514927 0 + 4870719783
2   ???                           	0x0000000122491a5c 0 + 4870183516
3   ???                           	0x0000000122449998 0 + 4869888408
4   ???                           	0x00000001224b3eb8 0 + 4870323896
5   ???                           	0x00000001224b404a 0 + 4870324298
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 12:: NetworkConfigWatcher
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224a77bf 0 + 4870272959
4   ???                           	0x00000001224a826c 0 + 4870275692
5   ???                           	0x00000001224a7ecd 0 + 4870274765
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 14:: NetworkConfigWatcher
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 15:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 16:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 17:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 18:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 19:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 20:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108e35b03 0 + 4444084995
8   ???                           	0x0000000108d5ccb1 0 + 4443196593
9   ???                           	0x0000000108e32989 0 + 4444072329
10  ???                           	0x0000000108d5cd28 0 + 4443196712
11  ???                           	0x0000000108e34e0c 0 + 4444081676
12  ???                           	0x0000000108e3227e 0 + 4444070526
13  ???                           	0x0000000108d5cd28 0 + 4443196712
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e3227e 0 + 4444070526
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5edb2 0 + 4443205042
18  ???                           	0x0000000108eda046 0 + 4444758086
19  ???                           	0x0000000108e8b2f9 0 + 4444435193
20  ???                           	0x00007fff20378954 0 + 140733733898580
21  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 21:
0   ???                           	0x00007fff203499e2 0 + 140733733706210
1   ???                           	0x0000000108d65306 0 + 4443230982
2   ???                           	0x0000000108e34e0c 0 + 4444081676
3   ???                           	0x0000000108e3227e 0 + 4444070526
4   ???                           	0x0000000108e35b03 0 + 4444084995
5   ???                           	0x0000000108d5ccb1 0 + 4443196593
6   ???                           	0x0000000108e34e0c 0 + 4444081676
7   ???                           	0x0000000108e3227e 0 + 4444070526
8   ???                           	0x0000000108e35b03 0 + 4444084995
9   ???                           	0x0000000108d5ccb1 0 + 4443196593
10  ???                           	0x0000000108e34e0c 0 + 4444081676
11  ???                           	0x0000000108e323e8 0 + 4444070888
12  ???                           	0x0000000108e35b03 0 + 4444084995
13  ???                           	0x0000000108d5ccb1 0 + 4443196593
14  ???                           	0x0000000108e34e0c 0 + 4444081676
15  ???                           	0x0000000108e322a2 0 + 4444070562
16  ???                           	0x0000000108d5cd28 0 + 4443196712
17  ???                           	0x0000000108d5ee59 0 + 4443205209
18  ???                           	0x0000000108e32989 0 + 4444072329
19  ???                           	0x0000000108d5cd28 0 + 4443196712
20  ???                           	0x0000000108e34e0c 0 + 4444081676
21  ???                           	0x0000000108e3227e 0 + 4444070526
22  ???                           	0x0000000108d5cd28 0 + 4443196712
23  ???                           	0x0000000108e34e0c 0 + 4444081676
24  ???                           	0x0000000108e3227e 0 + 4444070526
25  ???                           	0x0000000108d5cd28 0 + 4443196712
26  ???                           	0x0000000108d5edb2 0 + 4443205042
27  ???                           	0x0000000108eda046 0 + 4444758086
28  ???                           	0x0000000108e8b2f9 0 + 4444435193
29  ???                           	0x00007fff20378954 0 + 140733733898580
30  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 22:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108d78c5a 0 + 4443311194
6   ???                           	0x0000000108e31bbe 0 + 4444068798
7   ???                           	0x0000000108d5cd28 0 + 4443196712
8   ???                           	0x0000000108e32989 0 + 4444072329
9   ???                           	0x0000000108d5cd28 0 + 4443196712
10  ???                           	0x0000000108e34e0c 0 + 4444081676
11  ???                           	0x0000000108e3227e 0 + 4444070526
12  ???                           	0x0000000108d5cd28 0 + 4443196712
13  ???                           	0x0000000108e34e0c 0 + 4444081676
14  ???                           	0x0000000108e3227e 0 + 4444070526
15  ???                           	0x0000000108d5cd28 0 + 4443196712
16  ???                           	0x0000000108d5edb2 0 + 4443205042
17  ???                           	0x0000000108eda046 0 + 4444758086
18  ???                           	0x0000000108e8b2f9 0 + 4444435193
19  ???                           	0x00007fff20378954 0 + 140733733898580
20  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 23:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000108e8b6a6 0 + 4444436134
2   ???                           	0x000000012b32457e 0 + 5019682174
3   ???                           	0x000000012b324126 0 + 5019681062
4   ???                           	0x0000000108d9b0bd 0 + 4443451581
5   ???                           	0x0000000108e34e0c 0 + 4444081676
6   ???                           	0x0000000108e3234b 0 + 4444070731
7   ???                           	0x0000000108d5cd28 0 + 4443196712
8   ???                           	0x0000000108e32989 0 + 4444072329
9   ???                           	0x0000000108d5cd28 0 + 4443196712
10  ???                           	0x0000000108e34e0c 0 + 4444081676
11  ???                           	0x0000000108e3227e 0 + 4444070526
12  ???                           	0x0000000108d5cd28 0 + 4443196712
13  ???                           	0x0000000108e34e0c 0 + 4444081676
14  ???                           	0x0000000108e3227e 0 + 4444070526
15  ???                           	0x0000000108d5cd28 0 + 4443196712
16  ???                           	0x0000000108d5edb2 0 + 4443205042
17  ???                           	0x0000000108eda046 0 + 4444758086
18  ???                           	0x0000000108e8b2f9 0 + 4444435193
19  ???                           	0x00007fff20378954 0 + 140733733898580
20  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 24:: com.apple.NSEventThread
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00007fff20471c6f 0 + 140733734919279
3   ???                           	0x00007fff2047034f 0 + 140733734912847
4   ???                           	0x00007fff2046f75c 0 + 140733734909788
5   ???                           	0x00007fff22df1baa 0 + 140733778434986
6   ???                           	0x00007fff20378954 0 + 140733733898580
7   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 25:: MemoryInfra
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224e2bef 0 + 4870515695
4   ???                           	0x00000001224181c9 0 + 4869685705
5   ???                           	0x0000000122491a5c 0 + 4870183516
6   ???                           	0x0000000122449998 0 + 4869888408
7   ???                           	0x00000001224b3eb8 0 + 4870323896
8   ???                           	0x00000001224b404a 0 + 4870324298
9   ???                           	0x00000001224db908 0 + 4870486280
10  ???                           	0x00007fff20378954 0 + 140733733898580
11  ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 26:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224a77bf 0 + 4870272959
4   ???                           	0x00000001224a7f9a 0 + 4870274970
5   ???                           	0x00000001224a7e0d 0 + 4870274573
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 27:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000109c9c23f 0 + 4459184703
2   ???                           	0x00007fff20378954 0 + 140733733898580
3   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 28:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000109c9c23f 0 + 4459184703
2   ???                           	0x00007fff20378954 0 + 140733733898580
3   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 29:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000109c9c23f 0 + 4459184703
2   ???                           	0x00007fff20378954 0 + 140733733898580
3   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 30:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000109c9c23f 0 + 4459184703
2   ???                           	0x00007fff20378954 0 + 140733733898580
3   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 31:
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x0000000109c9c23f 0 + 4459184703
2   ???                           	0x00007fff20378954 0 + 140733733898580
3   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 32:: QFileInfoGatherer
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x00000001168dd8eb 0 + 4673362155
2   ???                           	0x00000001168dd85e 0 + 4673362014
3   ???                           	0x000000011e231e0d 0 + 4800585229
4   ???                           	0x00000001168d3663 0 + 4673320547
5   ???                           	0x00007fff20378954 0 + 140733733898580
6   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 33:
0   ???                           	0x00007fff20374484 0 + 140733733880964

Thread 34:
0   ???                           	0x00007fff20374484 0 + 140733733880964

Thread 35:
0   ???                           	0x00007fff20374484 0 + 140733733880964

Thread 36:
0   ???                           	0x00007fff20374484 0 + 140733733880964

Thread 37:: ThreadPoolForegroundWorker
0   ???                           	0x00007fff2034332a 0 + 140733733679914
1   ???                           	0x00007fff2034369c 0 + 140733733680796
2   ???                           	0x00000001224e2e26 0 + 4870516262
3   ???                           	0x00000001224a77bf 0 + 4870272959
4   ???                           	0x00000001224a7f9a 0 + 4870274970
5   ???                           	0x00000001224a7e6d 0 + 4870274669
6   ???                           	0x00000001224db908 0 + 4870486280
7   ???                           	0x00007fff20378954 0 + 140733733898580
8   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 38:: QFileInfoGatherer
0   ???                           	0x00007fff20345d4e 0 + 140733733690702
1   ???                           	0x00000001168dd8eb 0 + 4673362155
2   ???                           	0x00000001168dd85e 0 + 4673362014
3   ???                           	0x000000011e231e0d 0 + 4800585229
4   ???                           	0x00000001168d3663 0 + 4673320547
5   ???                           	0x00007fff20378954 0 + 140733733898580
6   ???                           	0x00007fff203744a7 0 + 140733733880999

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x00000001179e1e00  rcx: 0x00007f9df9955a58  rdx: 0x0000000000000000
  rdi: 0x0000000000000103  rsi: 0x000000000000000a  rbp: 0x00007f9df9955a80  rsp: 0x00007f9df9955a58
   r8: 0x00007f9df9955f48   r9: 0xd690c31b5bdb0fd1  r10: 0x00000001179e1e00  r11: 0x0000000000000246
  r12: 0x0000000000000103  r13: 0x0000600002600be0  r14: 0x000000000000000a  r15: 0x0000000000000016
  rip: 0x00007fff20349946  rfl: 0x0000000000000246  cr2: 0x00007f9df9ec90e0
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133

Thread 0 instruction stream not available.

Thread 0 last branch register state not available.


Binary Images:
                 0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.5.app/Contents/MacOS/ChimeraX
       0x11790a000 -        0x1179a5fff  dyld (851.27)  /usr/lib/dyld

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=852K resident=0K(0%) swapped_out_or_unallocated=852K(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate framework               512K        4 
Activity Tracing                   256K        1 
CG backing stores                  9.8M       12 
CG image                          1540K       48 
CoreAnimation                     2316K      108 
CoreGraphics                        16K        3 
CoreServices                       624K        2 
CoreUI image data                 5140K       43 
Foundation                          40K        2 
Kernel Alloc Once                 1316K        4 
MALLOC                             1.1G     1246 
MALLOC guard page                   32K        8 
MALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)
MALLOC_NANO (reserved)           384.0M        1         reserved VM address space (unallocated)
Mach message                        16K        3 
OpenGL GLSL                        384K        4 
STACK GUARD                        152K       38 
Stack                            294.3M       39 
Stack Guard                       56.0M        1 
VM_ALLOCATE                      259.9M      256 
VM_ALLOCATE (reserved)            32.0M        2         reserved VM address space (unallocated)
__DATA                             224K        2 
__DATA_CONST                        32K        1 
__LINKEDIT                         240K        2 
__TEXT                             624K        1 
dylib                             3692K       18 
dylib (reserved)                   916K      115         reserved VM address space (unallocated)
mapped file                      640.5M      498 
shared memory                     4520K       35 
===========                     =======  ======= 
TOTAL                              2.8G     2498 
TOTAL, minus reserved VM space     2.4G     2498 

===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb

Chain information for
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1  
---  
Chain | Description  
A | No description available  
  

> show cartoons

> hide #1 models

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb

F_actin_7bt7.pdb title:  
F-actin-adp complex structure [more info...]  
  
Chain information for F_actin_7bt7.pdb #2  
---  
Chain | Description | UniProt  
A B C D E | α-actin-1 | ACTS_CHICK  
  
Non-standard residues in F_actin_7bt7.pdb #2  
---  
ADP — adenosine-5'-diphosphate  
MG — magnesium ion  
  

> show #!2 atoms

> style #!2 sphere

Changed 14530 atom styles  

> style #!2 ball

Changed 14530 atom styles  

> style #!2 stick

Changed 14530 atom styles  

> ui tool show "Selection Inspector"

> rainbow #!2

> color #!2 bypolymer

> rainbow #!2

> color #!2 byhetero

> show #!2 surfaces

> hide #!2 surfaces

> hide #!2 cartoons

> show #!2 cartoons

> lighting full

> lighting soft

> lighting simple

> view clip false

> style #!2 stick

Changed 14530 atom styles  

> style #!2 stick

Changed 14530 atom styles  

> style #!2 sphere

Changed 14530 atom styles  

> style #!2 sphere

Changed 14530 atom styles  

> style #!2 ball

Changed 14530 atom styles  

> show #!2 cartoons

> hide #!2 cartoons

> hide #!2 atoms

> style #!2 sphere

Changed 14530 atom styles  

> show #!2 cartoons

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3  
---  
Chain | Description  
A | No description available  
  

> view #3 clip false

> show #3 target m

> show #!2 target m

> mmaker #2 to #3 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with
F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)  
  
Drag select of 5 residues  

> select add #2

14554 atoms, 14845 bonds, 9 pseudobonds, 1863 residues, 4 models selected  

> select add #3

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected  

> select subtract #2

2963 atoms, 3019 bonds, 377 residues, 6 models selected  

> ui mousemode right "translate selected models"

> view matrix models #3,1,0,0,-36.428,0,1,0,-36.184,0,0,1,64.784

> mmaker #2 to #3 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3) with
F_actin_7bt7.pdb, chain A (#2), sequence alignment score = 721.7  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)  
  

> ui mousemode right "translate selected models"

> hide #!2 models

> show #!2 models

> select subtract #3

Nothing selected  

> hide #!2 models

> select add #2

14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected  

> show #!2 models

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.032526,0.86166,-0.50645,-96.449,-0.67509,-0.35472,-0.64686,253.62,-0.73702,0.36294,0.57016,-6.7561

> ui tool show Matchmaker

> matchmaker #1,3 to #2/D pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb,
chain A (#1), sequence alignment score = 1208.2  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/D  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
RMSD between 345 pruned atom pairs is 0.760 angstroms; (across all 369 pairs:
1.349)  
  
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 704.8  
Alignment identifier is 4  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4  
Hiding conservation header for alignment 4  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4  
RMSD between 211 pruned atom pairs is 1.129 angstroms; (across all 346 pairs:
3.651)  
  

> select subtract #2

5 models selected  

> select add #3

2963 atoms, 3019 bonds, 377 residues, 1 model selected  

> select add #2

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected  

> ui mousemode right "translate selected models"

> select subtract #2

2963 atoms, 3019 bonds, 377 residues, 6 models selected  

> ui tool show Matchmaker

> show #1 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> hide #1 models

> show #3 models

> matchmaker #1,3 to #2/E pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb,
chain A (#1), sequence alignment score = 1141  
Alignment identifier is 5  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5  
Hiding conservation header for alignment 5  
Chains used in RMSD evaluation for alignment 5:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/E  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5  
RMSD between 348 pruned atom pairs is 0.782 angstroms; (across all 369 pairs:
1.301)  
  
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 695.2  
Alignment identifier is 6  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 6  
Hiding conservation header for alignment 6  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6  
RMSD between 220 pruned atom pairs is 1.119 angstroms; (across all 348 pairs:
3.650)  
  

> select subtract #3

Nothing selected  

> select add #2

14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected  

> select add #3

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 8 models selected  

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4  
---  
Chain | Description  
A | No description available  
  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5  
---  
Chain | Description  
A | No description available  
  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6  
---  
Chain | Description  
A | No description available  
  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7  
---  
Chain | Description  
A | No description available  
  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A  

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/collab/Uact_20221213_669d6.result/Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb

Chain information for Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8  
---  
Chain | Description  
A | No description available  
  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb chain A to
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A with 0 mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  

> ui tool show Matchmaker

> matchmaker #3 to #2/A pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain A (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 721.7  
Alignment identifier is 7  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 7  
Hiding conservation header for alignment 7  
Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 7  
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)  
  

> ui tool show Matchmaker

> matchmaker #4 to #2/B pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain B (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence
alignment score = 713.3  
Alignment identifier is 8  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 8  
Hiding conservation header for alignment 8  
Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 8  
RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs:
2.901)  
  

> ui tool show Matchmaker

> matchmaker #5 to #2/C pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain C (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence
alignment score = 741.7  
Alignment identifier is 9  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 9  
Hiding conservation header for alignment 9  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 9  
RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs:
2.643)  
  

> ui tool show Matchmaker

> matchmaker #6 to #2/D pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence
alignment score = 708.7  
Alignment identifier is 10  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 10  
Hiding conservation header for alignment 10  
Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 10  
RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs:
2.631)  
  

> hide #4 models

> show #4 models

> select subtract #2

2963 atoms, 3019 bonds, 377 residues, 6 models selected  

> select subtract #3

Nothing selected  

> color #2 white

> color #3 #e10000ff

> color #3 #e11800ff

> color #4 #d0ec0aff

> color #5 #2aef17ff

> color #6 #03cbdbff

> color #7 #0019edff

> color #8 #fa00d7ff

> select add #7

2963 atoms, 3019 bonds, 377 residues, 1 model selected  

> select add #2

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected  

> hide #7 models

> hide #8 models

> show #7 models

> select subtract #2

2963 atoms, 3019 bonds, 377 residues, 6 models selected  

> close #2

Chains used in RMSD evaluation for alignment 1:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Chains used in RMSD evaluation for alignment 2:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Chains used in RMSD evaluation for alignment 4:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Chains used in RMSD evaluation for alignment 6:
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  

> hide #7 models

> open
> /Users/corinahadjicharalambous/Desktop/alphafold_structures/20221213_Uactin/F_actin_7bt7.pdb

F_actin_7bt7.pdb title:  
F-actin-adp complex structure [more info...]  
  
Chain information for F_actin_7bt7.pdb #2  
---  
Chain | Description | UniProt  
A B C D E | α-actin-1 | ACTS_CHICK  
  
Non-standard residues in F_actin_7bt7.pdb #2  
---  
ADP — adenosine-5'-diphosphate  
MG — magnesium ion  
  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches  
Chains used in RMSD evaluation for alignment 3:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/B  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0
mismatches  
Chains used in RMSD evaluation for alignment 5:
bonito_35_1000_NEWcontig_1_3321_LOKIACTIN_0a311_unrelaxed_rank_1_model_1.pdb
#1/A, F_actin_7bt7.pdb #2/B  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain E with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain E with 0
mismatches  
Chains used in RMSD evaluation for alignment 6: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #8/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain A with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain A with 0
mismatches  
Chains used in RMSD evaluation for alignment 7: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain B with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain B with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain B with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain B with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain B with 0
mismatches  
Chains used in RMSD evaluation for alignment 8: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain C with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain C with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain C with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain C with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain C with 0
mismatches  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Associated F_actin_7bt7.pdb chain A to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain B to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain C to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain D to F_actin_7bt7.pdb, chain D with 0
mismatches  
Associated F_actin_7bt7.pdb chain E to F_actin_7bt7.pdb, chain D with 0
mismatches  
Chains used in RMSD evaluation for alignment 10: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> select add #2

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected  

> select #2/A-E:367-374 #6/A:367-377

413 atoms, 418 bonds, 51 residues, 2 models selected  

> select #2/A-E:338-374 #6/A:339-377

1769 atoms, 1811 bonds, 224 residues, 2 models selected  

> select add #6

4423 atoms, 4514 bonds, 562 residues, 2 models selected  

> select add #2

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected  

> select subtract #6

14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected  

> ui mousemode right "move picked models"

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,-124,0,1,0,-173.9,0,0,1,-141.37

> hide sel atoms

> show sel cartoons

Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  

> view matrix models #2,1,0,0,-90.945,0,1,0,-131.85,0,0,1,-137.05

> color #2 #e5ece8ff

> color #2 #f1f9f4ff

> color #2 #f7fffaff

> color #2 #f7fffa00

> color #2 #f7fffaff

> select subtract #2

Nothing selected  

> hide #6 models

> show #6 models

> show #7 models

> select add #8

2963 atoms, 3019 bonds, 377 residues, 1 model selected  

> hide #7 models

> show #7 models

> close #8

> select add #2

14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected  

> ui tool show Matchmaker

> matchmaker #3 to #2/A pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain A (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#3), sequence
alignment score = 721.7  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: F_actin_7bt7.pdb #2/A,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #3/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 219 pruned atom pairs is 1.160 angstroms; (across all 345 pairs:
3.864)  
  

> ui tool show Matchmaker

> matchmaker #4 to #2/B pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain B (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#4), sequence
alignment score = 713.3  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: F_actin_7bt7.pdb #2/B,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #4/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
RMSD between 218 pruned atom pairs is 1.158 angstroms; (across all 342 pairs:
2.901)  
  

> ui tool show Matchmaker

> matchmaker #5 to #2/C pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain C (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#5), sequence
alignment score = 741.7  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
RMSD between 216 pruned atom pairs is 1.152 angstroms; (across all 346 pairs:
2.643)  
  
Chains used in RMSD evaluation for alignment 9: F_actin_7bt7.pdb #2/C,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #5/A  

> ui tool show Matchmaker

> matchmaker #6 to #2/D pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain D (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#6), sequence
alignment score = 708.7  
Alignment identifier is 4  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4  
Hiding conservation header for alignment 4  
Chains used in RMSD evaluation for alignment 4: F_actin_7bt7.pdb #2/D,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #6/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4  
RMSD between 214 pruned atom pairs is 1.131 angstroms; (across all 346 pairs:
2.631)  
  

> ui tool show Matchmaker

> matchmaker #7 to #2/E pairing bs showAlignment true

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker F_actin_7bt7.pdb, chain E (#2) with
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb, chain A (#7), sequence
alignment score = 696.3  
Alignment identifier is 5  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 5  
Hiding conservation header for alignment 5  
Chains used in RMSD evaluation for alignment 5: F_actin_7bt7.pdb #2/E,
Uact_20221213_669d6_unrelaxed_rank_1_model_3.pdb #7/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5  
RMSD between 222 pruned atom pairs is 1.120 angstroms; (across all 340 pairs:
2.989)  
  

> select subtract #2

Nothing selected  

> select add #2

14530 atoms, 14845 bonds, 9 pseudobonds, 1860 residues, 2 models selected  

> select add #7

17493 atoms, 17864 bonds, 9 pseudobonds, 2237 residues, 3 models selected  

> select add #6

20456 atoms, 20883 bonds, 9 pseudobonds, 2614 residues, 4 models selected  

> select add #5

23419 atoms, 23902 bonds, 9 pseudobonds, 2991 residues, 5 models selected  

> select add #4

26382 atoms, 26921 bonds, 9 pseudobonds, 3368 residues, 6 models selected  

> select add #3

29345 atoms, 29940 bonds, 9 pseudobonds, 3745 residues, 7 models selected  

> view matrix models
> #3,0.032526,-0.67509,-0.73702,15.775,0.86166,-0.35472,0.36294,-23.461,-0.50645,-0.64686,0.57016,-58.218,#4,0.17063,0.57515,0.80005,-10.514,-0.84733,0.50007,-0.17879,-14.57,-0.50292,-0.6474,0.57267,-30.732,#5,-0.3621,-0.44472,-0.81921,17.131,0.78555,-0.61869,-0.011364,-17.239,-0.50178,-0.64765,0.57338,-3.2428,#6,0.5308,0.28774,0.79716,-10.366,-0.68116,0.7045,0.19926,-20.99,-0.50426,-0.64876,0.56994,24.276,#7,-0.67155,-0.11804,-0.7315,15.504,0.5417,-0.75179,-0.376,-10.95,-0.50555,-0.64875,0.5688,51.721,#2,1,0,0,-166.44,0,1,0,-187.11,0,0,1,-176.44

> view matrix models
> #3,0.032526,-0.67509,-0.73702,34.59,0.86166,-0.35472,0.36294,-11.413,-0.50645,-0.64686,0.57016,-59.956,#4,0.17063,0.57515,0.80005,8.3008,-0.84733,0.50007,-0.17879,-2.5213,-0.50292,-0.6474,0.57267,-32.47,#5,-0.3621,-0.44472,-0.81921,35.946,0.78555,-0.61869,-0.011364,-5.1907,-0.50178,-0.64765,0.57338,-4.9807,#6,0.5308,0.28774,0.79716,8.4487,-0.68116,0.7045,0.19926,-8.9411,-0.50426,-0.64876,0.56994,22.538,#7,-0.67155,-0.11804,-0.7315,34.319,0.5417,-0.75179,-0.376,1.0984,-0.50555,-0.64875,0.5688,49.983,#2,1,0,0,-147.63,0,1,0,-175.06,0,0,1,-178.18

> view matrix models
> #3,0.032526,-0.67509,-0.73702,27.411,0.86166,-0.35472,0.36294,-16.032,-0.50645,-0.64686,0.57016,-59.44,#4,0.17063,0.57515,0.80005,1.1219,-0.84733,0.50007,-0.17879,-7.1404,-0.50292,-0.6474,0.57267,-31.954,#5,-0.3621,-0.44472,-0.81921,28.767,0.78555,-0.61869,-0.011364,-9.8098,-0.50178,-0.64765,0.57338,-4.4647,#6,0.5308,0.28774,0.79716,1.2697,-0.68116,0.7045,0.19926,-13.56,-0.50426,-0.64876,0.56994,23.054,#7,-0.67155,-0.11804,-0.7315,27.14,0.5417,-0.75179,-0.376,-3.5207,-0.50555,-0.64875,0.5688,50.499,#2,1,0,0,-154.81,0,1,0,-179.68,0,0,1,-177.66

> select subtract #2

14815 atoms, 15095 bonds, 1885 residues, 5 models selected  

> select subtract #3

11852 atoms, 12076 bonds, 1508 residues, 4 models selected  

> select subtract #4

8889 atoms, 9057 bonds, 1131 residues, 3 models selected  

> select subtract #5

5926 atoms, 6038 bonds, 754 residues, 2 models selected  

> select subtract #6

2963 atoms, 3019 bonds, 377 residues, 1 model selected  

> select subtract #7

Nothing selected  

> save /Users/corinahadjicharalambous/F_actin_Uact_overlay.cxs includeMaps
> true

> save /Users/corinahadjicharalambous/F_actin_Uact_overlay.jpg width 1111
> height 1108 supersample 3


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-4.4.17
OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac19,1
      Processor Name: 6-Core Intel Core i5
      Processor Speed: 3.7 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Memory: 16 GB
      System Firmware Version: 1554.100.64.0.0
      SMC Version (system): 2.46f12

Software:

    System Software Overview:

      System Version: macOS 11.3 (20E232)
      Kernel Version: Darwin 20.4.0
      Time since boot: 2:52

Graphics/Displays:

    Radeon Pro 580X:

      Chipset Model: Radeon Pro 580X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 8 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67df
      Revision ID: 0x00c0
      ROM Revision: 113-D0008A-042
      VBIOS Version: 113-D0008A1X-009
      EFI Driver Version: 01.B1.042
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        iMac:
          Display Type: Built-In Retina LCD
          Resolution: 5120 x 2880 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        U2777B:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 30.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Component: UnassignedInput/Output
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionCrash in event loop possibly saving large image

comment:2 by Tom Goddard, 3 years ago

Resolution: can't reproduce
Status: assignedclosed

I'd guess it is an Apple Intel graphics driver crash. The image being saved is not very large (1111 by 1108 with supersample 3). C++ stack trace has no symbols.

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