Timeline



Sep 23, 2020:

3:18 PM Ticket #3750 (Bundle builder: DataDir from extra package not copied) closed by pett
fixed: Hi Tony, I have committed a fix. None of the bundles we have use the …
1:49 PM Ticket #3751 (Hang(?) drawing volume) closed by Tom Goddard
can't reproduce: Wow Chimera 0.7! Trying to show a very large 7503 volume and full …
12:11 PM Ticket #3752 (ISOLDE validation: not enough values to unpack) created by kartik.manne@…
[…]
10:36 AM Ticket #3751 (Hang(?) drawing volume) created by chimerax-bug-report@…
[…]
8:32 AM Ticket #3728 (Gratuitous re-registration of commands) closed by pett
can't reproduce: I guess I'm closing it as "can't reproduce", especially since we have …

Sep 22, 2020:

11:48 PM Ticket #3750 (Bundle builder: DataDir from extra package not copied) created by tony.schaefer@…
[…]
10:41 PM Ticket #3749 (ChimeraX compile fails on macOS 11.0 Big Sur) created by Tom Goddard
Building ChimeraX on macOS Big Sur beta 6 fails compiling Python. It …
10:02 PM Ticket #3630 (Remove binary prereqs from ChimeraX git repository) closed by Tom Goddard
fixed: The ChimeraX source code was migrated to github on September 14 with …
6:37 PM Ticket #3745 (Can't find split-off atomic lib on Linux) closed by pett
duplicate
6:15 PM Ticket #3748 (Can't find split-off atomic lib on Linux) created by goddard@…
[…]
5:11 PM ChangeLog edited by pett
(diff)
5:04 PM Ticket #3647 (Read Amber format) closed by pett
fixed: Tomorrow's daily build will read Amber netCDF coordinate files (.nc …
4:41 PM Ticket #3747 (Register shift: m > k must hold) created by csandate@…
[…]

Sep 21, 2020:

11:57 PM Ticket #3746 (ChimeraX fails to start on macOS 11 beta 6) created by Tom Goddard
ChimeraX fails to start on macOS 11 beta 6 (20A5364e). Here is the …
5:12 PM Ticket #3745 (Can't find split-off atomic lib on Linux) created by chimerax-bug-report@…
[…]
2:27 PM Ticket #3354 (Test update of bundles with binary (e.g. C++) components) closed by pett
fixed: Okay, split pdb into pdb_lib and pdb. That's all of them.
5:05 AM Ticket #3744 (Cannot enter '@' in registration dialog) created by r.p.cox@…
[…]

Sep 20, 2020:

6:54 AM Ticket #3743 (ISOLDE crash on startup (divide by zero; structure-prediction program ...) created by jrf296@…
[…]

Sep 19, 2020:

5:59 AM Ticket #3742 (Problem rewriting settings file) created by weberm@…
[…] 2ai5.pdb

Sep 18, 2020:

5:37 PM Ticket #3741 (devel install fails with new wheel version 0.35.1 module.) created by Tom Goddard
With PyPi wheel module version 0.35.1 bundle_builder fails apparently …
5:16 PM Ticket #3740 (Ghost head and hands of person who left 3-person VR meeting) created by goddard@…
[…]
5:14 PM Ticket #3739 (Stuck VR hand controller during 3 person meeting) created by goddard@…
[…]
5:12 PM Ticket #3738 (Tape-measure mouse mode not syncing) created by goddard@…
[…]
5:10 PM Ticket #3737 ("Move selected models" mouse mode does not issue command) created by goddard@…
[…]
12:36 PM Ticket #3736 (vr meeting: source code string cannot contain null bytes) created by goddard@…
[…]
11:56 AM Ticket #3735 (vr meeting: float division by zero) created by goddard@…
[…]
10:08 AM Ticket #3732 (Ribbon pick: index is out of bounds for axis) closed by Tom Goddard
duplicate: Duplicate. Fixed months ago.
5:48 AM Ticket #3734 (Have 'usage' report default value) created by Tristan Croll
[…]
2:12 AM Ticket #3733 (Building with Conda-Forge?) created by Tristan Croll
I received the following email from John Chodera yesterday: …
12:18 AM Ticket #3732 (Ribbon pick: index is out of bounds for axis) created by chimerax-bug-report@…
[…]

Sep 17, 2020:

4:35 PM Ticket #3725 (config/settings errors if multiple ChimeraXs starting up at once) closed by pett
fixed: Embedded the PID into the temp file name used by "safe saving" which …
2:34 PM Ticket #3731 (residue_graph: edges should be a n x 2 array of unsigned ints) created by sitins07@…
[…]
2:20 PM Ticket #3730 (Account for symmetry in RMSD calculation) created by Elaine Meng
Such as in the rmsd command, but possibly also in other commands that …
2:18 PM Ticket #1896 (RFE: measure rmsd command) closed by pett
fixed: Implemented basic rmsd command that does not account for symmetry. …
12:09 PM Ticket #3729 (flip peptide bond: Simulation must be running) created by chimerax-bug-report@…
[…]
10:50 AM Ticket #3727 (Swapaa mouse mode using deleted residue) closed by Tom Goddard
fixed: Fixed. This is a weird rare case. Leucine 707 of 6m17 is a HETATM …
9:55 AM WikiStart edited by Tom Goddard
(diff)
9:54 AM WikiStart edited by Tom Goddard
(diff)
4:14 AM Ticket #3728 (Gratuitous re-registration of commands) created by Tristan Croll
[…]

Sep 16, 2020:

8:22 PM Ticket #3727 (Swapaa mouse mode using deleted residue) created by chimerax-bug-report@…
[…]
8:13 PM LinuxBuildSetup edited by Tom Goddard
(diff)
7:37 PM WindowsDevReq edited by Tom Goddard
(diff)
7:25 PM WindowsDevReq edited by Tom Goddard
(diff)
4:14 PM Ticket #3726 (Graphics hardware encountered an error) closed by Tom Goddard
duplicate: Same crash, same reporter, #3720.
3:31 PM Ticket #3726 (Graphics hardware encountered an error) created by chimerax-bug-report@…
[…]
10:33 AM Ticket #3725 (config/settings errors if multiple ChimeraXs starting up at once) created by Tristan Croll
[…]
9:40 AM Ticket #3720 (Graphics hardware crash) closed by Tom Goddard
can't reproduce: Searching online for gpusKillClientExt turns up no end of these kinds …
9:32 AM Ticket #3724 (Write failure raises OSError instead of IOError) created by chimerax-bug-report@…
[…]
8:54 AM Ticket #3722 (Crash computing aromatic rings) closed by pett
can't reproduce
8:52 AM Ticket #3721 (Crash computing aromatic rings) closed by pett
can't reproduce
7:21 AM Ticket #3723 (Cannot rewrite settings file: "being used by another process") created by chimerax-bug-report@…
[…]
7:21 AM Ticket #3722 (Crash computing aromatic rings) created by chimerax-bug-report@…
[…]
7:12 AM Ticket #3721 (Crash computing aromatic rings) created by chimerax-bug-report@…
[…]

Sep 15, 2020:

6:53 PM Ticket #3720 (Graphics hardware crash) created by chimerax-bug-report@…
[…]
5:57 PM Ticket #3697 (Replace non-standard Windows numpy and scipy packages with PyPi ones) closed by Tom Goddard
fixed: Done. With PyPi numpy and scipy ChimeraX took 16.6 second to compute …
3:34 PM Ticket #3719 (Nucleotides: asking for distance from None) created by siyuchen2021@…
[…]
11:02 AM Ticket #3715 (CIF: Missing column 'label_asym_id') closed by Greg Couch
not a bug: Sorry, ChimeraX only loads mmCIF files, not small molecule CIF files. …
9:02 AM Ticket #3718 (Corrupted settings file?) created by chimerax-bug-report@…
[…]
8:23 AM Ticket #3714 (swapBuffers crash) closed by pett
can't reproduce
4:55 AM Ticket #3717 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by chimerax-bug-report@…
[…]
1:46 AM Ticket #3716 (Error within error message) created by Tristan Croll
[…]
1:19 AM Ticket #3715 (CIF: Missing column 'label_asym_id') created by ubaumann@…
[…] Angew 04-20.cif

Sep 14, 2020:

8:27 PM Ticket #3714 (swapBuffers crash) created by chimerax-bug-report@…
[…]
5:06 PM Ticket #3129 (Model panel confirm close) closed by pett
fixed: If 'Close' would close multiple top-level models without them being …
3:05 PM Ticket #3713 (Crash with multiple displays) closed by Tom Goddard
nonchimerax: ChimeraX crashed in Apple's Metal graphics library and the crash …
1:22 PM Ticket #3713 (Crash with multiple displays) created by csandate@…
[…]
9:19 AM Ticket #3711 (Crash in Clipper) closed by Tristan Croll
can't reproduce: Not much to go on there, without access to the offending data... I'm …
6:58 AM Ticket #3712 (Clipper map roaming overflow in computing bounds) created by chimerax-bug-report@…
[…]
3:20 AM Ticket #3711 (Crash in Clipper) created by chimerax-bug-report@…
[…]

Sep 13, 2020:

2:43 AM Ticket #3710 (Problem installing ISOLDE into 1.0) created by yonca.ural-blimke@…
[…]

Sep 12, 2020:

6:44 PM Ticket #3702 (make build-from-scratch fails) closed by Greg Couch
fixed: Add -f.

Sep 11, 2020:

4:11 PM Ticket #3441 (somewhat unusual chain editing causes crash) closed by pett
fixed: When chain C got merged into chain A, the chain C object got "demoted" …
10:34 AM Ticket #3704 (ISOLDE/Atomic version conflict) closed by pett
not a bug: I think it's better to make the dependency on 1.6 instead of 1.6.0 …
9:16 AM Ticket #3707 (Crash rendering QtQuick scene graph from timer) closed by pett
can't reproduce
9:02 AM Ticket #3706 (Error opening PDBQT) closed by pett
fixed: Hi Andrew, Thanks for reporting this problem. It is fixed in the …
8:59 AM Ticket #3709 (Disabled ISOLDE menu) created by Tristan Croll
[…]
7:42 AM Ticket #3708 (EMDB initial contour level) created by Tristan Croll
[…]
7:14 AM Ticket #3707 (Crash rendering QtQuick scene graph from timer) created by chimerax-bug-report@…
[…]

Sep 10, 2020:

8:32 PM Ticket #3706 (Error opening PDBQT) created by andrew.guy@…
[…] new1_1.pdbqt
7:04 PM Ticket #3705 (Bundle builder opaque error message) created by chimerax-bug-report@…
[…]
4:28 PM Ticket #3694 (Crash adding then deleting residue) closed by pett
fixed: For the specific case of a residue being added into the …
2:54 PM Ticket #3703 ("toolshed install" documentation error) closed by Elaine Meng
fixed: fixed in develop branch
2:52 PM Ticket #3704 (ISOLDE/Atomic version conflict) created by pett
[…]
2:45 PM Ticket #3703 ("toolshed install" documentation error) created by pett
The syntax summary for "toolshed install" in its help page shows …
12:22 PM Ticket #3702 (make build-from-scratch fails) created by pett
cd /Users/pett/src/chimerax/build/sync && rm */*.whl rm: */*.whl: No …
10:40 AM Milestone 1.1 completed
== Update mechanism (critical) == * "Flatten" RBVI bundles

Sep 9, 2020:

6:08 PM Ticket #3701 (SortedDIct.iloc deprecated) closed by pett
fixed
4:23 PM Ticket #3701 (SortedDIct.iloc deprecated) created by goddard@…
[…]
4:02 PM Ticket #3700 (Tape measure: 'Structure' object has no attribute 'session') closed by Tom Goddard
duplicate: Duplicate of #3457, fixed a few months ago.
3:25 PM Ticket #3688 (Segger obsolete import) closed by Tom Goddard
fixed: Fixed. Segger tar balls on plato mistakenly contained wheel files and …
12:56 PM Ticket #3700 (Tape measure: 'Structure' object has no attribute 'session') created by chimerax-bug-report@…
[…]
10:59 AM ChangeLog edited by Elaine Meng
(diff)
5:46 AM Ticket #3699 (Starting simulation: clEnqueueNDRangeKernel (-4)) created by stefan.schmelz@…
[…]
4:18 AM Ticket #3698 (Libraries not found when generating bundle documentation) created by Tristan Croll
[…]

Sep 8, 2020:

7:16 PM Ticket #3697 (Replace non-standard Windows numpy and scipy packages with PyPi ones) created by Tom Goddard
For unclear reasons we are using custom compiled numpy and scipy …
4:19 PM Ticket #3695 (Notes with markers) closed by Tom Goddard
fixed: Fixed in daily build and 1.1 release candidate. Markers with notes …
3:14 PM Ticket #3652 (Main graphics goes gray) closed by Tom Goddard
nonchimerax: Ok. Good. But the Nvidia graphics will give better performance than …
11:07 AM Ticket #3692 (Crash during popup window) closed by Tom Goddard
can't reproduce: User has 3 screens. Possibly a Qt bug related to the popup (atom …
10:58 AM Ticket #3691 (Map pixel-size precision) closed by Tom Goddard
nonchimerax: It is using the full precision pixel size that you set, it only …
9:43 AM Ticket #3696 (ISOLDE color-picker problem) created by rjr27@…
[…]
9:02 AM Ticket #3693 (Crash popping up atom spec or tooltip) closed by pett
can't reproduce
4:47 AM Ticket #3695 (Notes with markers) created by r.frank@…
[…]
1:45 AM Ticket #3694 (Crash adding then deleting residue) created by Tristan Croll
[…]

Sep 6, 2020:

7:18 PM Ticket #3693 (Crash popping up atom spec or tooltip) created by chimerax-bug-report@…
[…]
5:35 PM Ticket #3692 (Crash during popup window) created by chimerax-bug-report@…
[…]
1:10 AM Ticket #3691 (Map pixel-size precision) created by sitins07@…
[…]

Sep 4, 2020:

6:54 PM Ticket #3362 (Run command from VR wand button press) closed by Tom Goddard
fixed: vr button command can assign any command to any VR controller button. …
6:51 PM Ticket #2602 (View command includes vr room camera) closed by Tom Goddard
fixed: Fixed. Made vr room camera not contribute to scene bounds and …
6:48 PM Ticket #2833 (VR room camera depth cue is wrong) closed by Tom Goddard
fixed: Fixed. VR room camera was being included in scene bounds. Made it …
6:33 PM Ticket #2835 (View all misbehaves in VR) closed by Tom Goddard
fixed: Fixed. Problem was that the gui panels were included in the bounds …
6:30 PM Ticket #2810 (Make device realsense enable vr room camera) closed by Tom Goddard
fixed: Made realsense command start vr room camera Feb 10, 2020.
5:54 PM Ticket #2811 (Volume image black backing face for augmented reality videos) closed by Tom Goddard
fixed: Added as volume command option backingColor (can be a color or "none") …
5:35 PM Ticket #2170 (Better VR button assignments for Oculus hand controllers) closed by Tom Goddard
fixed: Fixed on July 5, 2019. Allowed hand controllers to have default …
5:31 PM Ticket #1580 (Make VR grip button move models) closed by Tom Goddard
fixed: Oculus grip button became move models on July 5, 2019.
5:27 PM Ticket #1573 (Turn off depth cueing for VR meeting head and hands) closed by Tom Goddard
fixed: Fixed. Disabled depth cue on VR face model. This was long overdue, …
5:12 PM Ticket #1137 (Add popup menu display in VR gui panel) closed by Tom Goddard
fixed: This was added Sept 23, 2019.
3:53 PM Ticket #3242 (ctrl-click selects all atoms with same name in a residue) closed by pett
fixed: Now uses the much uglier @@serial_number=N specifier when necessary.
2:38 PM Ticket #3690 (ChimeraX hangs at startup, white window, two displays, Windows 10) created by goddard@…
[…]
11:58 AM Ticket #3585 (AddH: unusual positioning) closed by pett
not a bug: For /L5:1907, one proton is positioned to H-bond with /L5:1885@O2' and …
11:32 AM Ticket #3689 (Another Segger obsolete import) closed by Tom Goddard
duplicate: Same as #3688. Bug in ChimeraX nightly build system on Linux is …
2:09 AM Ticket #3689 (Another Segger obsolete import) created by Tristan Croll
[…]
1:47 AM Ticket #3688 (Segger obsolete import) created by Tristan Croll
[…]

Sep 3, 2020:

6:37 PM Ticket #3687 (Find a way for VR meeting to handle firewalls) created by Tom Goddard
For two people at different universities to have a VR meeting one …
3:34 PM Ticket #3686 (Non-obvious menu) closed by Tom Goddard
fixed: Fixed in 1.2. I removed the white menubar background from the Segment …
3:03 PM Ticket #3685 (geometry/graphics memory leak) closed by Tom Goddard
fixed: Believed fixed, but up to you to test since I don't have a test case …
11:04 AM Ticket #3665 (Toolshed updates: Connection refused) closed by Greg Couch
fixed: Revised to always to do updates asynchronously.
8:31 AM Ticket #3686 (Non-obvious menu) created by Tristan Croll
[…]
2:29 AM Ticket #3685 (geometry/graphics memory leak) created by Tristan Croll
[…]
2:09 AM Ticket #3684 (mmCIF memory leak) created by Tristan Croll
[…]

Sep 2, 2020:

7:24 PM Ticket #3675 (Only lower left quadrant of graphics shown, external display) closed by Tom Goddard
fixed: Fixed in nightly build, not in 1.1 release candidate. Won't fix in …
5:07 PM Ticket #3683 (Startup hangs on Windows when initial size spans two screens) created by goddard@…
[…]
3:48 PM Ticket #3682 (Crash when screen removed) created by rsarsam@…
[…]
2:17 PM ChangeLog edited by pett
(diff)
9:19 AM Ticket #3671 (Crash during geometry change) closed by pett
can't reproduce: Thanks for the report and feedback though! --Eric

Sep 1, 2020:

8:05 PM Ticket #3678 (surface cap coloring by zone not saved in session) closed by Tom Goddard
fixed: Fixed in 1.2, not in 1.1 (too risky).. Saved cap models in sessions. …
6:58 PM Ticket #3680 (Clip plane adjustment: Cut fraction is out of range) closed by Tom Goddard
fixed: Fixed. Using sharp edges option with colorzone sometimes caused …
5:59 PM Ticket #3681 (Molecule Display toolbar icons in different orders, sometimes ...) created by Elaine Meng
See attached screenshots showing the Molecule Display tool with …
5:47 PM Ticket #3677 (per-model clipping status not saved in session) closed by Tom Goddard
fixed: Fixed in 1.2. The allow_clipping attribute was not saved in sessions. …
5:05 PM Ticket #2723 (Lazy managers) closed by pett
fixed: A manager with the attribute autostart="false" is lazy.
4:31 PM Ticket #3680 (Clip plane adjustment: Cut fraction is out of range) created by Elaine Meng
[…] bfactorclip.cxc
2:17 PM Ticket #3679 (Unit testing framework?) created by Tristan Croll
API changes in the update to ChimeraX 1.1 have broken both Clipper and …
1:34 PM Ticket #3672 (Deleting residue involved in sequence alignment: list indices must be ...) closed by pett
fixed: Thanks for the report. Fixed in both develop and release branches.
1:33 PM Ticket #3678 (surface cap coloring by zone not saved in session) created by Elaine Meng
Same cxc setup file, png file of how it looked when I saved the …
1:29 PM Ticket #3677 (per-model clipping status not saved in session) created by Elaine Meng
The attached session was saved with atomic model clipping off, surface …
12:55 PM Ticket #3676 (Out-of-date mmCIF templates) created by Tristan Croll
[…]
11:40 AM Ticket #3673 (Need additional trigger-blocking control) closed by pett
fixed: As per your suggestion, added manual_block/release() calls, on both …
11:17 AM Ticket #3675 (Only lower left quadrant of graphics shown, external display) created by pmmcnutt@…
[…] chimerax bug.pptx
10:05 AM Ticket #3674 (Create a video about how to create a bundle) created by Tom Goddard
Would be nice to have a 3 minute video showing all the steps to create …
7:04 AM Ticket #3673 (Need additional trigger-blocking control) created by Tristan Croll
[…]
5:44 AM Ticket #3672 (Deleting residue involved in sequence alignment: list indices must be ...) created by Tristan Croll
[…]

Aug 31, 2020:

8:38 PM Ticket #3671 (Crash during geometry change) created by lynnettj@…
[…]
1:37 PM Ticket #3670 (chimerax 1.0 installation) created by Muyuan.Chen@…
[…]
1:20 PM Ticket #3271 (Line-ending issues for resaved PDB files) closed by pett
fixed: The endings are now uniformly just newline. Fix available in next …
11:23 AM Ticket #3669 (Crash during display change) closed by Tom Goddard
can't reproduce
11:11 AM Ticket #2289 (Suppress log scrolling if log link clicked) closed by pett
fixed: Fixed on develop and release branches.
8:52 AM Ticket #3668 (Problem restoring session) closed by pett
duplicate: Hi Ben, Thanks for reporting this problem. It was fixed on October …
6:14 AM Ticket #3669 (Crash during display change) created by chimerax-bug-report@…
[…]

Aug 30, 2020:

11:57 PM Ticket #3661 (Make ChimeraX start faster, takes 5 seconds) closed by Greg Couch
fixed: Found the culprit. Revised code that dealt with the available bundle …
11:44 PM Ticket #3662 (Re-install not reinstalling) closed by Greg Couch
fixed: Should be fixed :-). Add code to rebuild installed bundle cache if …
11:15 PM Ticket #3666 (Installed bundle not used until restart) closed by Greg Couch
fixed: Needed to create the "user" site-packages/chimerax namespace directory …
6:02 PM Ticket #3668 (Problem restoring session) created by ben.gully@…
[…]

Aug 29, 2020:

2:29 AM Ticket #3664 (Drag select ignoring 'pickable' attribute) closed by Tristan Croll
fixed: Yep - explicitly adding pickable=False to each drawing did the trick.

Aug 28, 2020:

2:07 PM Ticket #3663 (Typo in graphics/drawing.py) closed by Tom Goddard
fixed: Fixed in 1.1 release branch and in develop. Apparently no code was …
1:19 PM Ticket #3667 (non-terminal O3' should not get protonated) created by pett
e.g. /R;127 in 1eyg
9:17 AM Ticket #3666 (Installed bundle not used until restart) created by pett
After installing the BlastProtein bundle from the toolshed (and never …
8:57 AM Ticket #3665 (Toolshed updates: Connection refused) created by pett
[…]
8:28 AM Ticket #3664 (Drag select ignoring 'pickable' attribute) created by Tristan Croll
[…]
8:22 AM Ticket #3663 (Typo in graphics/drawing.py) created by Tristan Croll
[…]
5:00 AM Ticket #3662 (Re-install not reinstalling) created by Tristan Croll
[…]
1:57 AM Ticket #3659 (Failure to correct ligand when no CCD template available) closed by Tristan Croll
fixed: The first traceback here: `AttributeError: 'PositionRestraintMgr' …

Aug 27, 2020:

10:54 PM Ticket #3660 (bundle install failure) closed by Greg Couch
fixed: Available BundleInfo instance needed to be converted to …
5:53 PM Ticket #3661 (Make ChimeraX start faster, takes 5 seconds) created by goddard@…
[…]
3:32 PM Ticket #3660 (bundle install failure) created by pett
[…]
12:30 PM Ticket #3659 (Failure to correct ligand when no CCD template available) created by assaf_alon@…
[…]
10:40 AM Ticket #3173 (BLAST PDB web services being removed November 2020) closed by pett
fixed: Updated Blast Protein to use GraphQL, so all information is retrieved …
9:10 AM Ticket #3658 (Crash opening 128 volumes) created by zhonge@…
[…]

Aug 26, 2020:

4:35 PM ChangeLog edited by Greg Couch
(diff)
3:33 PM NeteSOW edited by Elaine Meng
(diff)
12:17 PM Ticket #2289 (Suppress log scrolling if log link clicked) reopened by Elaine Meng
The problem of scrolling to the bottom of the Log from clicking …
9:51 AM Ticket #3657 (Crash showing tooltip) closed by pett
can't reproduce
9:49 AM Ticket #3655 (Crash while showing window) closed by pett
can't reproduce

Aug 25, 2020:

6:09 PM Ticket #3657 (Crash showing tooltip) created by chimerax-bug-report@…
[…]
5:46 PM Ticket #3656 (Make OBJ reader handle ".mtl" material files using colors and textures) created by Tom Goddard
Would be interesting to be able to open OBJ files with textures on …
5:04 PM Ticket #3655 (Crash while showing window) created by chimerax-bug-report@…
[…]
1:18 PM Ticket #3654 (Mis-named hydrogens) closed by pett
fixed: Fixed. Pushed to both develop and release branches.
11:58 AM Ticket #3651 (Two, two commands in one) closed by pett
fixed: Okay, pushed fixes to both develop and release.
9:56 AM Ticket #3654 (Mis-named hydrogens) created by Elaine Meng
[…]
4:34 AM Ticket #3653 (HETATM vs. ATOM) created by Tristan Croll
[…]
2:02 AM Ticket #3652 (Main graphics goes gray) created by alexyc991@…
[…] bug.PNG

Aug 24, 2020:

6:02 PM Ticket #3651 (Two, two commands in one) created by goddard@…
[…]
4:50 PM Ticket #3218 (Duplicate residues created in Chain) closed by pett
fixed: F86 can be polymeric, but its phosphorus is named P1, so loosened …
3:49 PM Ticket #3650 (degenerate structure) closed by pett
nonchimerax: Hi Valentyn, As per the log message "Structure has degenerate atomic …
3:22 PM Ticket #3650 (degenerate structure) created by sitins07@…
[…]
2:28 PM Ticket #3649 (radio button non-existent) closed by pett
duplicate
2:20 PM Ticket #3646 (Attempt to option-group check button which is None) closed by pett
can't reproduce: Seems impossible looking hard at the code. Would need an actual …
2:11 PM Ticket #3649 (radio button non-existent) created by Elaine Meng
[…]
2:10 PM Ticket #3648 (radio button non-existent) created by Elaine Meng
[…]
1:55 PM Ticket #3647 (Read Amber format) created by J.R.Lewandowsk@…
as per summary
1:26 PM Ticket #3646 (Attempt to option-group check button which is None) created by Elaine Meng
[…]
10:40 AM Ticket #3642 (Bad IDATM typing) closed by pett
not a bug: The residue was named 'A' (e.g. adenosine in RNA) when it shouldn't …
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