![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#3721 closed defect (can't reproduce)
Crash computing aromatic rings
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Analysis | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.2.dev202009150003 (2020-09-15 00:03:23 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [19004]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.0 (1.2.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [19004]
User ID: 501
Date/Time: 2020-09-16 10:10:23.742 -0400
OS Version: Mac OS X 10.15.6 (19G2021)
Report Version: 12
Anonymous UUID: 713F4457-17A2-DD1C-CFE1-223BE7A310F0
Sleep/Wake UUID: 1AE865EB-45D4-406A-993D-32AE4785597C
Time Awake Since Boot: 850000 seconds
Time Since Wake: 260000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000058
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x58:
-->
__TEXT 0000000103529000-000000010352a000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6f69b33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6f757e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6f5b293e raise + 26
3 libsystem_platform.dylib 0x00007fff6f74c5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libmolc.dylib 0x000000011ace9e69 ring_aromatic + 57
6 _ctypes.cpython-37m-darwin.so 0x0000000104eb5e17 ffi_call_unix64 + 79
7 _ctypes.cpython-37m-darwin.so 0x0000000104eb66a5 ffi_call + 901
8 _ctypes.cpython-37m-darwin.so 0x0000000104eb0f62 _ctypes_callproc + 882
9 _ctypes.cpython-37m-darwin.so 0x0000000104eaa6dc PyCFuncPtr_call + 1196
10 org.python.python 0x00000001035536df _PyObject_FastCallKeywords + 575
11 org.python.python 0x0000000103628bcd call_function + 765
12 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
13 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
15 org.python.python 0x000000010355bca0 property_descr_get + 160
16 org.python.python 0x0000000103590ebb _PyObject_GenericGetAttrWithDict + 171
17 org.python.python 0x0000000103623bee _PyEval_EvalFrameDefault + 19358
18 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
19 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
20 org.python.python 0x0000000103628bd4 call_function + 772
21 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
22 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
23 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
24 org.python.python 0x0000000103625a3a _PyEval_EvalFrameDefault + 27114
25 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
26 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
27 org.python.python 0x0000000103628bd4 call_function + 772
28 org.python.python 0x000000010361f5c4 _PyEval_EvalFrameDefault + 1396
29 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
30 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
31 org.python.python 0x0000000103628bd4 call_function + 772
32 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
33 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
34 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
35 org.python.python 0x0000000103625a3a _PyEval_EvalFrameDefault + 27114
36 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
37 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
38 org.python.python 0x0000000103628bd4 call_function + 772
39 org.python.python 0x000000010361f5c4 _PyEval_EvalFrameDefault + 1396
40 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
41 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
42 org.python.python 0x0000000103625a3a _PyEval_EvalFrameDefault + 27114
43 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
44 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
45 org.python.python 0x0000000103628bd4 call_function + 772
46 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
47 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
48 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
49 org.python.python 0x0000000103628bd4 call_function + 772
50 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
51 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
52 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
53 org.python.python 0x0000000103628bd4 call_function + 772
54 org.python.python 0x000000010361f5c4 _PyEval_EvalFrameDefault + 1396
55 org.python.python 0x0000000103553d61 function_code_fastcall + 177
56 org.python.python 0x0000000103628bd4 call_function + 772
57 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
58 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
59 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
60 org.python.python 0x0000000103628bd4 call_function + 772
61 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
62 org.python.python 0x0000000103553d61 function_code_fastcall + 177
63 org.python.python 0x0000000103628bd4 call_function + 772
64 org.python.python 0x0000000103625817 _PyEval_EvalFrameDefault + 26567
65 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
66 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
67 org.python.python 0x0000000103625a3a _PyEval_EvalFrameDefault + 27114
68 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
69 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
70 org.python.python 0x0000000103554873 _PyObject_Call_Prepend + 131
71 org.python.python 0x00000001035539d8 PyObject_Call + 136
72 org.python.python 0x0000000103625a3a _PyEval_EvalFrameDefault + 27114
73 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
74 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
75 org.python.python 0x0000000103628bd4 call_function + 772
76 org.python.python 0x000000010361f5c4 _PyEval_EvalFrameDefault + 1396
77 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
78 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
79 QtCore.so 0x000000010f374f17 PyQtSlot::call(_object*, _object*) const + 39
80 QtCore.so 0x000000010f374e26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
81 QtCore.so 0x000000010f375925 PyQtSlotProxy::unislot(void**) + 85
82 QtCore.so 0x000000010f37589a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
83 QtCore 0x000000010d2ac13d QMetaObject::activate(QObject*, int, int, void**) + 1773
84 QtWidgets 0x000000010c586075 QAction::activate(QAction::ActionEvent) + 309
85 QtWidgets.so 0x000000010c038eae sipQToolButton::nextCheckState() + 94
86 QtWidgets 0x000000010c679c73 0x10c57f000 + 1027187
87 QtWidgets 0x000000010c67adff QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
88 QtWidgets 0x000000010c7722cf QToolButton::mouseReleaseEvent(QMouseEvent*) + 15
89 QtWidgets.so 0x000000010c037f98 sipQToolButton::mouseReleaseEvent(QMouseEvent*) + 120
90 QtWidgets 0x000000010c5cb3bd QWidget::event(QEvent*) + 445
91 QtWidgets 0x000000010c77285f QToolButton::event(QEvent*) + 319
92 QtWidgets.so 0x000000010c0388b0 sipQToolButton::event(QEvent*) + 192
93 QtWidgets 0x000000010c58f67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
94 QtWidgets 0x000000010c5924d8 QApplication::notify(QObject*, QEvent*) + 7336
95 QtWidgets.so 0x000000010c14f3ca sipQApplication::notify(QObject*, QEvent*) + 234
96 QtCore 0x000000010d27b324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
97 QtWidgets 0x000000010c58ffa0 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
98 QtWidgets 0x000000010c5ea90e 0x10c57f000 + 440590
99 QtWidgets 0x000000010c5e95c9 0x10c57f000 + 435657
100 QtWidgets 0x000000010c58f67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
101 QtWidgets 0x000000010c590a82 QApplication::notify(QObject*, QEvent*) + 594
102 QtWidgets.so 0x000000010c14f3ca sipQApplication::notify(QObject*, QEvent*) + 234
103 QtCore 0x000000010d27b324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
104 QtGui 0x000000010cb64779 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3961
105 QtGui 0x000000010cb4b46b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
106 libqcocoa.dylib 0x0000000117091900 0x11705b000 + 223488
107 libqcocoa.dylib 0x0000000117092068 0x11705b000 + 225384
108 com.apple.CoreFoundation 0x00007fff354e8d52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
109 com.apple.CoreFoundation 0x00007fff354e8cf1 __CFRunLoopDoSource0 + 103
110 com.apple.CoreFoundation 0x00007fff354e8b0b __CFRunLoopDoSources0 + 209
111 com.apple.CoreFoundation 0x00007fff354e783a __CFRunLoopRun + 927
112 com.apple.CoreFoundation 0x00007fff354e6e3e CFRunLoopRunSpecific + 462
113 com.apple.HIToolbox 0x00007fff34113abd RunCurrentEventLoopInMode + 292
114 com.apple.HIToolbox 0x00007fff341136f4 ReceiveNextEventCommon + 359
115 com.apple.HIToolbox 0x00007fff34113579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
116 com.apple.AppKit 0x00007fff32759039 _DPSNextEvent + 883
117 com.apple.AppKit 0x00007fff32757880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
118 com.apple.AppKit 0x00007fff3274958e -[NSApplication run] + 658
119 libqcocoa.dylib 0x0000000117090de3 0x11705b000 + 220643
120 QtCore 0x000000010d27693f QEventLoop::exec(QFlags) + 431
121 QtCore 0x000000010d27b932 QCoreApplication::exec() + 130
122 QtWidgets.so 0x000000010c23e7d2 meth_QApplication_exec_(_object*, _object*) + 82
123 org.python.python 0x0000000103554382 _PyMethodDef_RawFastCallKeywords + 226
124 org.python.python 0x00000001035538b9 _PyCFunction_FastCallKeywords + 41
125 org.python.python 0x0000000103628b60 call_function + 656
126 org.python.python 0x0000000103625817 _PyEval_EvalFrameDefault + 26567
127 org.python.python 0x0000000103553d61 function_code_fastcall + 177
128 org.python.python 0x0000000103628bd4 call_function + 772
129 org.python.python 0x0000000103625817 _PyEval_EvalFrameDefault + 26567
130 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
131 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
132 org.python.python 0x0000000103628bd4 call_function + 772
133 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
134 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
135 org.python.python 0x000000010361efb0 PyEval_EvalCode + 48
136 org.python.python 0x000000010361c547 builtin_exec + 583
137 org.python.python 0x000000010355452d _PyMethodDef_RawFastCallKeywords + 653
138 org.python.python 0x00000001035538b9 _PyCFunction_FastCallKeywords + 41
139 org.python.python 0x0000000103628b60 call_function + 656
140 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
141 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
142 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
143 org.python.python 0x0000000103628bd4 call_function + 772
144 org.python.python 0x00000001036258ae _PyEval_EvalFrameDefault + 26718
145 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
146 org.python.python 0x0000000103553377 _PyFunction_FastCallDict + 455
147 org.python.python 0x0000000103683af3 pymain_run_module + 147
148 org.python.python 0x0000000103682bdc pymain_main + 5900
149 org.python.python 0x00000001036814c3 Py_Main + 51
150 edu.ucsf.cgl.ChimeraX 0x0000000103529dc8 main + 120
151 libdyld.dylib 0x00007fff6f553cc9 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff354e8ef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff354e79c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff354e6e3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff328fa954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111bf605d 0x10faa0000 + 34955357
5 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff6f699766 kevent + 10
1 QtWebEngineCore 0x0000000111f039a9 0x10faa0000 + 38156713
2 QtWebEngineCore 0x0000000111f00cbd 0x10faa0000 + 38145213
3 QtWebEngineCore 0x0000000111cb7cdc 0x10faa0000 + 35749084
4 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
5 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
6 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 4:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff6f699766 kevent + 10
1 QtWebEngineCore 0x0000000111f039a9 0x10faa0000 + 38156713
2 QtWebEngineCore 0x0000000111f00cbd 0x10faa0000 + 38145213
3 QtWebEngineCore 0x0000000111cb7cc4 0x10faa0000 + 35749060
4 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
5 QtWebEngineCore 0x0000000111c60a74 0x10faa0000 + 35392116
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 5:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a2c4 0x10faa0000 + 35365572
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 6:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a2c4 0x10faa0000 + 35365572
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 7:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a2c4 0x10faa0000 + 35365572
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 8:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a234 0x10faa0000 + 35365428
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 9:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a234 0x10faa0000 + 35365428
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 10:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6f699766 kevent + 10
1 QtWebEngineCore 0x0000000111f039a9 0x10faa0000 + 38156713
2 QtWebEngineCore 0x0000000111f00cbd 0x10faa0000 + 38145213
3 QtWebEngineCore 0x0000000111cb7cc4 0x10faa0000 + 35749060
4 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
5 QtWebEngineCore 0x000000011158dfe4 0x10faa0000 + 28237796
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 11:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111c59d1a 0x10faa0000 + 35364122
5 QtWebEngineCore 0x0000000111c5a3bf 0x10faa0000 + 35365823
6 QtWebEngineCore 0x0000000111c5a264 0x10faa0000 + 35365476
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 12:: CompositorTileWorker1/73475
0 libsystem_kernel.dylib 0x00007fff6f697882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6f758425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000111caffa8 0x10faa0000 + 35717032
3 QtWebEngineCore 0x0000000112c364c8 0x10faa0000 + 51995848
4 QtWebEngineCore 0x0000000111c70694 0x10faa0000 + 35456660
5 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
6 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111bf605d 0x10faa0000 + 34955357
5 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111bf605d 0x10faa0000 + 34955357
5 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 15:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111bf6052 0x10faa0000 + 34955346
4 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
5 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
6 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 16:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6f699766 kevent + 10
1 QtWebEngineCore 0x0000000111f039a9 0x10faa0000 + 38156713
2 QtWebEngineCore 0x0000000111f00cbd 0x10faa0000 + 38145213
3 QtWebEngineCore 0x0000000111cb7cdc 0x10faa0000 + 35749084
4 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
5 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
6 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 17:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111c59d1a 0x10faa0000 + 35364122
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a324 0x10faa0000 + 35365668
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c4222f 0x10faa0000 + 35267119
4 QtWebEngineCore 0x0000000111bf605d 0x10faa0000 + 34955357
5 QtWebEngineCore 0x0000000111c1f085 0x10faa0000 + 35123333
6 QtWebEngineCore 0x0000000111c719bc 0x10faa0000 + 35461564
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 19:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6f694dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6f695170 mach_msg + 60
2 QtWebEngineCore 0x0000000111c4232d 0x10faa0000 + 35267373
3 QtWebEngineCore 0x0000000111c42421 0x10faa0000 + 35267617
4 QtWebEngineCore 0x0000000111c59d28 0x10faa0000 + 35364136
5 QtWebEngineCore 0x0000000111c5a65b 0x10faa0000 + 35366491
6 QtWebEngineCore 0x0000000111c5a2c4 0x10faa0000 + 35365572
7 QtWebEngineCore 0x0000000111cb1717 0x10faa0000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff6f697882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6f758425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010549bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6f753b68 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6f753b68 start_wqthread + 0
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6f753b68 start_wqthread + 0
Thread 24:
0 libsystem_kernel.dylib 0x00007fff6f697882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6f758425 _pthread_cond_wait + 698
2 org.python.python 0x000000010366d0af PyThread_acquire_lock_timed + 351
3 org.python.python 0x00000001036b89df acquire_timed + 111
4 org.python.python 0x00000001036b875c lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010355456a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x000000010355a571 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000103628bfe call_function + 814
8 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000103628bd4 call_function + 772
12 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000103629a2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000103553879 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000103628bd4 call_function + 772
16 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000103553d61 function_code_fastcall + 177
18 org.python.python 0x0000000103628bd4 call_function + 772
19 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000103553d61 function_code_fastcall + 177
21 org.python.python 0x0000000103628bd4 call_function + 772
22 org.python.python 0x00000001036257fa _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000103553d61 function_code_fastcall + 177
24 org.python.python 0x0000000103554873 _PyObject_Call_Prepend + 131
25 org.python.python 0x00000001035539d8 PyObject_Call + 136
26 org.python.python 0x00000001036b9287 t_bootstrap + 71
27 org.python.python 0x000000010366cd19 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff6f758109 _pthread_start + 148
29 libsystem_pthread.dylib 0x00007fff6f753b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010512adc0 rcx: 0x00007fa407577a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fa407577a80 rsp: 0x00007fa407577a58
r8: 0x00007fa407577f48 r9: 0x8b8863c9877e24e0 r10: 0x000000010512adc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6f69b33a rfl: 0x0000000000000246 cr2: 0x000000010378efa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6d673000 - 0x7fff6d674fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff6d675000 - 0x7fff6d68dff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff6d6a5000 - 0x7fff6d74cff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff6d74d000 - 0x7fff6d9afff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff6dd1c000 - 0x7fff6dd4bfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6de7b000 - 0x7fff6e2f7ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff6e2f8000 - 0x7fff6e30ffff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff6e398000 - 0x7fff6e3cbfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff6e3de000 - 0x7fff6e3e2fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff6e3e5000 - 0x7fff6e41bff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff6e45b000 - 0x7fff6e469ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6e49f000 - 0x7fff6e4b7fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff6e4b9000 - 0x7fff6e4fdff7 libsandbox.1.dylib (1217.141.1) /usr/lib/libsandbox.1.dylib
0x7fff6e511000 - 0x7fff6e512ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6e513000 - 0x7fff6e6fdff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff6e8f3000 - 0x7fff6e94dff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff6e94e000 - 0x7fff6e951ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff6e952000 - 0x7fff6e95fff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff6e965000 - 0x7fff6ea47ff7 libxml2.2.dylib (33.4) /usr/lib/libxml2.2.dylib
0x7fff6ea4b000 - 0x7fff6ea73fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff6ea74000 - 0x7fff6ea86ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6f335000 - 0x7fff6f33aff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6f33b000 - 0x7fff6f346fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6f347000 - 0x7fff6f34efff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6f34f000 - 0x7fff6f358ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6f359000 - 0x7fff6f3ebfdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff6f4f8000 - 0x7fff6f538ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6f539000 - 0x7fff6f56ffff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff6f570000 - 0x7fff6f570ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6f571000 - 0x7fff6f57dff3 libkxld.dylib (6153.141.1) /usr/lib/system/libkxld.dylib
0x7fff6f57e000 - 0x7fff6f57eff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff6f57f000 - 0x7fff6f584ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6f585000 - 0x7fff6f587ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6f588000 - 0x7fff6f589ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6f58a000 - 0x7fff6f5a1ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6f5a2000 - 0x7fff6f5a2ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6f5a3000 - 0x7fff6f62afff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6f62b000 - 0x7fff6f62effb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6f62f000 - 0x7fff6f632fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6f633000 - 0x7fff6f63bfff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6f63c000 - 0x7fff6f643fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6f644000 - 0x7fff6f645ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6f646000 - 0x7fff6f693ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6f694000 - 0x7fff6f6c0ff7 libsystem_kernel.dylib (6153.141.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff6f6c1000 - 0x7fff6f708fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6f709000 - 0x7fff6f730fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6f731000 - 0x7fff6f73effb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6f73f000 - 0x7fff6f748ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6f749000 - 0x7fff6f751fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6f752000 - 0x7fff6f75cfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6f75d000 - 0x7fff6f761ff3 libsystem_sandbox.dylib (1217.141.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6f762000 - 0x7fff6f764fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6f765000 - 0x7fff6f76cffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6f76d000 - 0x7fff6f783ff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff6f785000 - 0x7fff6f78aff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6f78b000 - 0x7fff6f7c0ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 656412
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=897.7M resident=0K(0%) swapped_out_or_unallocated=897.7M(100%)
Writable regions: Total=924.1M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=924.1M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 496K 3
CG image 80K 12
CoreAnimation 2220K 70
CoreGraphics 8K 1
CoreImage 24K 5
CoreUI image data 1112K 19
Foundation 24K 2
Image IO 40K 6
Kernel Alloc Once 8K 1
MALLOC 264.0M 330
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 96K 24
Stack 159.7M 25
Stack Guard 56.0M 1
VM_ALLOCATE 110.4M 313
__DATA 49.4M 527
__DATA_CONST 40K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 412.5M 138
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 485.2M 496
__UNICODE 564K 1
mapped file 136.1M 57
shared memory 652K 18
=========== ======= =======
TOTAL 2.1G 2082
TOTAL, minus reserved VM space 1.7G 2082
System Profile:
Network Service: PC via Ethernet 2, Ethernet, en0
Network Service: Wi-Fi, AirPort, en1
Thunderbolt Bus: Mac mini, Apple Inc., 26.1
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E434C544D4C41522D4E5444
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80AD, 0x483943434E4E4E434C544D4C41522D4E5444
USB Device: USB 3.0 Bus
USB Device: BUP Slim BK
USB Device: Logitech Webcam C930e
USB Device: IR Receiver
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
USB Device: USB Keyboard
USB Device: USB-PS/2 Optical Mouse
Serial ATA Device: Samsung SSD 850 EVO 1TB, 1 TB
Model: Macmini7,1, BootROM 249.0.0.0.0, 2 processors, Dual-Core Intel Core i5, 2.6 GHz, 16 GB, SMC 2.24f32
Graphics: kHW_IntelIrisItem, Intel Iris, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x13B), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1615.1)
Bluetooth: Version 7.0.6f7, 3 services, 18 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.dev202009150003 (2020-09-15)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/Bruce/Desktop/ADAM17/* Docking simulations by Bruce/6M17
> homodimer-SARS dock ADAM17/6M17__homodimer_BDE_SARS.pdb" format pdb
No such file/path: /Users/Bruce/Desktop/ADAM17/* Docking simulations by
Bruce/6M17 homodimer-SARS dock ADAM17/6M17__homodimer_BDE_SARS.pdb
OpenGL version: 4.1 INTEL-14.7.8
OpenGL renderer: Intel Iris OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: Mac mini
Model Identifier: Macmini7,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 249.0.0.0.0
SMC Version (system): 2.24f32
Software:
System Software Overview:
System Version: macOS 10.15.6 (19G2021)
Kernel Version: Darwin 19.6.0
Time since boot: 10 days 17:30
Graphics/Displays:
Intel Iris:
Chipset Model: Intel Iris
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a2e
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
DELL U3014:
Resolution: 2560 x 1600
UI Looks like: 2560 x 1600 @ 60 Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: J3Y9N63G634L
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.8.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.dev202009150003
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0.1
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Structure Analysis |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash computing aromatic rings |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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