Timeline



Apr 1, 2024:

11:46 PM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) created by goddard@…
[…]
11:33 PM Ticket #14866 (Crash using open dialog) created by chimerax-bug-report@…
[…]
8:21 PM Ticket #14815 (volume splitbyzone problems) closed by Tom Goddard
limitation: I see "volume splitbyzone #1" crashed, probably because it ran out of …
7:15 PM Ticket #14865 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
6:40 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by pett
fixed: Now that Chain/StructureSeq doesn't demote itself to Sequence, there …
6:16 PM Ticket #14864 (RFE: dedicated Z-translation mouse mode) created by Elaine Meng
It is too difficult for some of us to use multiple modifier keys …
5:39 PM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by Tom Goddard
duplicate: Duplicate of #14787
5:32 PM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by Tom Goddard
nonchimerax: ChimeraX crashed in the Apple AMD graphics driver. Unfortunately the …
5:20 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) closed by Tom Goddard
duplicate: Duplicate of #14863
4:54 PM Ticket #14863 (fitmap search variable fitting results) created by deng.luo@…
Roden Luo reports that fitmap search sometimes produces variable …
4:47 PM Dev2024-4-1 created by Tom Goddard
4:33 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:19 PM Ticket #14862 (KeyError: "No known data format 'mtz'") created by chimerax-bug-report@…
[…]
1:50 PM Ticket #14861 (Crash changing display configuration) closed by pett
can't reproduce
1:00 PM Ticket #14763 (glClear: invalid value) closed by Tom Goddard
nonchimerax: I agree with Eric that this looks like a graphics driver problem and …
12:29 PM Ticket #14861 (Crash changing display configuration) created by chimerax-bug-report@…
[…]
12:02 PM Ticket #14743 (Unreliable Z translation in mouse mode) closed by Tom Goddard
not a bug: The ctrl key must be pressed after the trackpad click on the Mac to …
11:14 AM Ticket #14860 (Crash giving window focus from mouse) closed by pett
can't reproduce
11:02 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) closed by pett
can't reproduce: Hi Tim, Thanks for reporting this problem. The information you was …
10:48 AM Ticket #14860 (Crash giving window focus from mouse) created by chimerax-bug-report@…
[…]
10:46 AM Ticket #14857 (Crash in python_instances_of_class) closed by pett
duplicate
10:45 AM Ticket #14856 (Crash using open/save dialog) closed by pett
can't reproduce
10:39 AM Ticket #14854 (Crash in garbage collection) closed by pett
duplicate
10:34 AM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
duplicate: 1.3
10:32 AM Ticket #14851 (Crash in garbage collection) closed by pett
duplicate
10:16 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
10:14 AM Ticket #14846 (Crash in event loop) closed by pett
can't reproduce
1:57 AM Ticket #14859 (Crash handling color swatch favorite) created by 979472689@…
[…]
12:47 AM Ticket #14858 (Crash getting secondary structure IDs after deleting residues) created by tmckeith@…
[…]

Mar 31, 2024:

2:35 PM Ticket #14857 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
12:27 PM Ticket #14856 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
7:03 AM Ticket #14855 (Error fetching CCD) created by lee.yang@…
[…] SCR-20240331-kxzi.png
5:05 AM Ticket #14854 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 29, 2024:

6:14 PM Ticket #14853 (No template for residue type) created by chimerax-bug-report@…
[…]
5:56 PM Ticket #14852 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
2:11 PM Ticket #14851 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:31 AM Ticket #14850 (perframe / clip front problem) created by jacquero@…
[…]
6:30 AM Ticket #14849 (ViewDockX issue) created by 294598870@…
[…] problem.png
4:48 AM Ticket #14848 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by rf2366@…
[…]
12:49 AM Ticket #14847 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]

Mar 28, 2024:

11:41 PM Ticket #14846 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:02 PM Ticket #10051 (Add PDB-REDO to fetch by id to get x-ray maps) closed by pett
fixed: Fetching the PDB-REDO MTZ maps as well will be tomorrow's daily build. …
5:27 PM Ticket #14845 (bundle metadata incorrect) closed by pett
limitation: Ah. Well, I am loathe to convert bundle_info.xml to pyproject.toml in …
5:08 PM Ticket #14845 (bundle metadata incorrect) created by pett
In mmcif/bundle_info.xml I want to define two fetchers For PDB-REDO, …
4:26 PM Ticket #14844 (Crash in python_instances_of_class) closed by pett
duplicate
4:09 PM Ticket #10175 (Toggling rapid access stops plane viewer redrawing) closed by Zach Pearson
fixed: Closing as we now use Qt 6.6.2 and I no longer observe the behavior.
2:05 PM NIAID2024 edited by Elaine Meng
(diff)
2:00 PM NIAID2024 edited by Elaine Meng
(diff)
12:13 PM NIAID2024 edited by Elaine Meng
(diff)
12:05 PM NIAID2024 edited by Elaine Meng
(diff)
11:20 AM Ticket #14844 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
10:33 AM Ticket #14800 (python_instances_of_class: 'Chain' object has no attribute '_c_pointer_ref') closed by pett
duplicate: This is another variant of the python_instances_of_class problem.
10:20 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Amit, Thanks for reporting this problem. This is a bug in the Qt …
10:17 AM Ticket #14842 (Crash destroying tool) closed by pett
can't reproduce
10:12 AM Ticket #14840 (Crash in create_profile) closed by pett
can't reproduce: 1.3
10:00 AM Ticket #14839 (Crash in garbage collection) closed by pett
duplicate
8:38 AM Ticket #14843 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by amit.amit@…
[…]
4:30 AM Ticket #14842 (Crash destroying tool) created by chimerax-bug-report@…
[…]
3:30 AM Ticket #14841 (Qt6WebEngineCore) created by dengjc21@…
[…]
2:14 AM Ticket #14840 (Crash in create_profile) created by chimerax-bug-report@…
[…]

Mar 27, 2024:

5:53 PM Ticket #14839 (Crash in garbage collection) created by shakeel.s@…
[…]
2:08 PM Ticket #14833 (Unknown problem) closed by pett
not a bug: Hi Kama, It is a bug that that message is displayed, but it's a …
11:12 AM Ticket #14838 (savepos) closed by pett
not a bug: Hi Kamil, "savepos" is a Chimera command, not a ChimeraX command. …
9:32 AM Ticket #14838 (savepos) created by kamil.sekulski@…
[…]
9:16 AM Ticket #14837 (Unknown crash) closed by pett
can't reproduce
9:07 AM Ticket #14835 (Crash in garbage collection) closed by pett
duplicate
9:05 AM Ticket #14834 (Access violation in python_instances_of_class) closed by pett
duplicate: Adding Tristan to ticket we already have open for this.
9:00 AM Ticket #14832 (Access violation in python_instances_of_class) closed by pett
duplicate
8:58 AM Ticket #14831 (Crash changing display configuration) closed by pett
can't reproduce
8:55 AM Ticket #14830 (Restoring new session in old ChimeraX) closed by pett
limitation: Hi Hanako, Session files are "forwards compatible" -- new versions of …
7:55 AM Ticket #14837 (Unknown crash) created by chimerax-bug-report@…
[…]
6:20 AM Ticket #14836 (Residue addition problem) created by Tristan Croll
[…]
5:07 AM Ticket #14835 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #14834 (Access violation in python_instances_of_class) created by Tristan Croll
[…]
12:47 AM Ticket #14833 (Unknown problem) created by kamadak@…
[…]

Mar 26, 2024:

10:43 PM Ticket #14832 (Access violation in python_instances_of_class) created by chimerax-bug-report@…
[…]
8:42 PM Ticket #14831 (Crash changing display configuration) created by chimerax-bug-report@…
[…]
6:21 PM Ticket #14830 (Restoring new session in old ChimeraX) created by isdhnk@…
[…]
6:07 PM Ticket #14823 (Crash in python_instances_of_class while saving session) closed by pett
duplicate: Using #14783 as principal ticket for this problem.
6:06 PM Ticket #14790 (Crash in python_instances_of_class) closed by pett
duplicate: Using #14783 as principal ticket for this crash. Adding reporter to …
6:02 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) reopened by pett
4:44 PM Ticket #14829 (Problem opening pdb file) closed by pett
not a bug: Hi George, The first five columns of each line in your file are a …
4:37 PM Ticket #14827 (Crash in garbage collection) closed by pett
duplicate
4:28 PM Ticket #14829 (Problem opening pdb file) created by gtzotzos@…
[…] [[Image(...)]]
2:02 PM Ticket #14804 (Bad IDATM type assignment) closed by pett
fixed: Fix: …
12:15 PM Ticket #14828 (ISOLDE: ResidueStepper holding reference to closed structure) created by chimerax-bug-report@…
[…]
11:31 AM Ticket #14827 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:31 AM Ticket #14826 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
9:18 AM Ticket #14825 (Crash as display config changed) closed by pett
can't reproduce
9:08 AM Ticket #14821 (Qt setting frame origin y to NaN) closed by pett
can't reproduce
8:22 AM Ticket #14825 (Crash as display config changed) created by chimerax-bug-report@…
[…]
6:22 AM Ticket #14824 (altloc submodel problems) created by Tristan Croll
[…]
5:47 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) closed by Tristan Croll
fixed: OK, fixed for now (uploaded new Clipper/ISOLDE builds, requiring …
1:40 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) closed by Greg Couch
fixed: Fixed. The switch to using the styling heuristic in the readcif …
12:24 AM Ticket #14823 (Crash in python_instances_of_class while saving session) created by chimerax-bug-report@…
[…]

Mar 25, 2024:

7:47 PM Ticket #14822 (glClearColor: out of memory) created by chimerax-bug-report@…
[…]
5:04 PM Ticket #14821 (Qt setting frame origin y to NaN) created by chimerax-bug-report@…
[…]
3:05 PM Ticket #14817 (Keyboard interrupt reading trajectory) closed by pett
not a bug: Hi Fernando, I'm guessing you used control-C because the …
2:57 PM Ticket #14814 (Crash in event loop) closed by pett
can't reproduce
2:44 PM Ticket #14813 (Antechamber failure) closed by pett
can't reproduce: Hi Maya, Thanks for reporting this problem. I could not reproduce …
2:22 PM Ticket #14812 (Crash in event loop) closed by pett
can't reproduce
2:05 PM Ticket #14809 (Charge failure) closed by pett
duplicate
9:40 AM Ticket #14820 (glBindBuffer: invalid operation) created by rhenriques08@…
[…]
9:09 AM Ticket #14819 (ARM ChimeraX has Intel Cython lib) created by Tristan Croll
[…]
7:15 AM Ticket #14818 (ChimeraX 1.8 Ubuntu 22.04 missing dependency) created by Tristan Croll
[…]
6:25 AM NIAID2024 edited by Elaine Meng
(diff)
1:51 AM Ticket #14817 (Keyboard interrupt reading trajectory) created by f.bruno@…
[…]

Mar 24, 2024:

8:02 PM Ticket #14816 (Framebuffer incomplete) created by chimerax-bug-report@…
[…]
6:52 PM Ticket #14815 (volume splitbyzone problems) created by rawalswasti@…
[…]
6:36 PM Ticket #14814 (Crash in event loop) created by rawalswasti@…
[…]
6:17 PM NIAID2024 created by Scooter Morris
6:05 PM Ticket #14813 (Antechamber failure) created by mayacheung@…
[…] compound9_ligand.mol
2:46 PM Ticket #14812 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:01 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
11:37 AM Ticket #14810 (Infinite recursion reading REDO mmCIF) created by francisco.murphy@…
[…]
5:58 AM Ticket #14809 (Charge failure) created by chimerax-bug-report@…
[…]

Mar 22, 2024:

3:22 PM Ticket #14808 (Crash drawing scene) created by chimerax-bug-report@…
[…]
1:34 PM Ticket #14807 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
11:34 AM Ticket #14806 (Crash in garbage collection) closed by pett
duplicate: Hi Yuhao, Thanks for reporting this problem. We believe it is fixed …
10:44 AM Ticket #14802 (hbonds: wrong number of acc_phi_psi() positional arguments) closed by pett
can't reproduce
10:33 AM Ticket #14801 (Graphics driver crash / Compositor returned null texture) closed by pett
can't reproduce
10:02 AM Ticket #14799 (Crash in Clipper: int divide by zero) closed by pett
can't reproduce: Very old version
9:54 AM Ticket #14798 (hbonds: More than 2 coplanar positions specified) closed by pett
can't reproduce: Probable bad structure
9:49 AM Ticket #14806 (Crash in garbage collection) created by tomyuhao@…
[…]
9:40 AM Ticket #14797 (~ attribute test) closed by pett
not a bug: Hi Ollie, In implementing the "Select" tab in the Render By Attribute …
8:58 AM Ticket #14805 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
[…]
6:58 AM Ticket #14804 (Bad IDATM type assignment) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #14803 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by d1ban@…
[…]
6:13 AM Ticket #14802 (hbonds: wrong number of acc_phi_psi() positional arguments) created by chimerax-bug-report@…
[…]
6:04 AM Ticket #14801 (Graphics driver crash / Compositor returned null texture) created by chimerax-bug-report@…
[…]
2:34 AM Ticket #14800 (python_instances_of_class: 'Chain' object has no attribute '_c_pointer_ref') created by chimerax-bug-report@…
[…]

Mar 21, 2024:

9:40 PM Ticket #14799 (Crash in Clipper: int divide by zero) created by chimerax-bug-report@…
[…]
5:15 PM Ticket #14798 (hbonds: More than 2 coplanar positions specified) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #14797 (~ attribute test) created by olibclarke@…
[…]
1:21 PM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) closed by pett
can't reproduce: Probably need to use some Windows-specific codec, but without an …
12:51 PM ChangeLog edited by Elaine Meng
(diff)
12:16 PM 2024-3-21 edited by Zach Pearson
(diff)
12:00 PM 2024-3-21 edited by Zach Pearson
(diff)
11:53 AM 2024-3-21 edited by Zach Pearson
(diff)
11:35 AM 2024-3-21 created by Zach Pearson
11:03 AM DeveloperMeetings edited by Zach Pearson
(diff)
10:53 AM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by Greg Couch
can't reproduce: remote display?
10:49 AM Ticket #14793 (QKeyEvent in drag/drop code) closed by pett
can't reproduce: Hi Vincent, Thanks for reporting this problem. This seems to be a …
10:34 AM Ticket #14792 (Crash in garbage collection) closed by pett
duplicate
10:33 AM Ticket #14791 (Crash in garbage collection) closed by pett
duplicate
3:07 AM Ticket #14796 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by lp212@…
[…]
2:16 AM Ticket #14795 (Read PDB: 'utf-8' codec can't decode byte) created by chimerax-bug-report@…
[…]

Mar 20, 2024:

9:10 PM Ticket #14794 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
8:58 PM Ticket #14793 (QKeyEvent in drag/drop code) created by chimerax-bug-report@…
[…]
6:06 PM Ticket #14792 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
5:51 PM Ticket #14791 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
5:46 PM Ticket #14776 (AlphaFold query sequence problem) closed by Tom Goddard
fixed: Fixed in the daily build. More details in ticket #14777.
5:45 PM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) closed by Tom Goddard
fixed: Fixed in the daily build. More details in ticket #14777.
1:25 PM Ticket #14790 (Crash in python_instances_of_class) created by Ching-Fang.Chang@…
[…]
9:02 AM Ticket #14788 (Crash in garbage collection) closed by pett
duplicate
8:59 AM Ticket #14786 (Crash showing widget) closed by pett
can't reproduce
8:57 AM Ticket #14785 (SyntaxError opening map) closed by pett
duplicate
8:41 AM Ticket #14789 (Unknown crash) created by benjamin.myers@…
[…]
7:16 AM Ticket #14788 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
4:52 AM Ticket #14787 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by lp212@…
[…]
12:56 AM Ticket #14786 (Crash showing widget) created by chimerax-bug-report@…
[…]

Mar 19, 2024:

6:18 PM Ticket #14778 (scipy built for MacOS 12) closed by Tom Goddard
limitation: Unfortunately the Mac ARM scipy PyPi distribution requires macOS 12 or …
2:27 PM Ticket #14785 (SyntaxError opening map) created by chimerax-bug-report@…
[…]
1:19 PM Ticket #14783 (Crash in python_instances_of_class while computing morph) closed by pett
can't reproduce
12:10 PM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by Greg Couch
not a bug: If a user installs the .tar.gz version, then they are responsible for …
11:24 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) closed by pett
duplicate
11:20 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:33 AM Ticket #14784 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #14783 (Crash in python_instances_of_class while computing morph) created by chimerax-bug-report@…
[…]
5:32 AM Ticket #14782 (MolecularDynamicsViewer: list index out of range) created by chimerax-bug-report@…
[…]
1:58 AM Ticket #14781 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #14780 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
1:20 AM Ticket #14779 (libGLU.so.1: cannot open shared object file: No such file or directory) created by chimerax-bug-report@…
[…]
12:32 AM Ticket #14778 (scipy built for MacOS 12) created by m.patzschke@…
[…]

Mar 18, 2024:

2:55 PM Ticket #10357 (Phenix water placement: name 'args' is not defined) closed by pett
fixed: Fixed in daily build
12:51 PM Ticket #10363 ('build peptide' convenience options) closed by pett
fixed: After discussion, not implementing strand/helix

Mar 17, 2024:

2:48 AM Ticket #14777 (Alphafold prediction: invalid character in the sequence) created by Tom Goddard
ChimeraX Alphafold prediction stopped working I believe on March 14, …

Mar 15, 2024:

12:12 PM Ticket #14776 (AlphaFold query sequence problem) created by diabellstar2500@…
[…]
10:48 AM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) closed by pett
duplicate: Duplicate of #14770
8:07 AM Ticket #14775 (AlphaFold not running (Invalid character in the sequence)) created by MCINNES@…
[…] [[Image(...)]]
2:32 AM Ticket #14774 (Nucleotide undo after deletion throws traceback) created by chimerax-bug-report@…
[…]
2:06 AM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) created by chimerax-bug-report@…
[…]

Mar 14, 2024:

7:20 PM Ticket #14765 (Missing dynamic libraries) closed by Greg Couch
wontfix: Those libraries are in …
7:12 PM Ticket #14772 (Bundle ChimeraX-NMRSTAR has no module) created by rsalinas@…
[…]
6:31 PM Ticket #14771 (AlphaFold2 colab notebook error) closed by Tom Goddard
not a bug: Your sequence ends in Q which is not a 1 letter code for the 20 …
6:13 PM Ticket #14767 (toolshed install: Non-existent wheel file) closed by pett
not a bug: User must be following some recipe where they are supposed to replace …
6:08 PM Ticket #14764 (Crash in garbage collection) closed by pett
duplicate
6:05 PM Ticket #14771 (AlphaFold2 colab notebook error) created by bregman3@…
[…]
6:02 PM Ticket #14770 (Fitmap global search: shift/rotation initializations not always random) created by deng.luo@…
Details in https://github.com/RBVI/ChimeraX/issues/40 Reported by …
5:45 PM Ticket #14769 (transparency command doesn't work on nucleotide representations) created by Elaine Meng
Unlike the color command, the transparency command has no "target f" …
5:04 PM Ticket #14768 (Fitmap global search: shift/rotation initializations not always random) created by deng.luo@…
[…] ChimeraX error while submitting feedback.png
4:15 PM Ticket #14767 (toolshed install: Non-existent wheel file) created by chimerax-bug-report@…
[…]

Mar 13, 2024:

10:12 PM Ticket #14766 (ChimeraX bug report submission) closed by Zach Pearson
invalid: I did not actually mean to submit this bug report.
10:11 PM Ticket #14766 (ChimeraX bug report submission) created by Zach Pearson
[…]
9:55 PM Ticket #14765 (Missing dynamic libraries) created by markus.meier@…
[…]
3:19 PM Ticket #14764 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:43 AM Ticket #14756 (Help Viewer: No module named 'pyqt') closed by Greg Couch
fixed: Fixed. Uses qtpy shim for qtpy.sip.
9:32 AM Ticket #14742 (Add Hydrogens: Singular matrix) closed by pett
not a bug: Hi Xylia, Thanks for supplying the structure. What is it supposed to …
8:59 AM Ticket #14762 (Unknown crash) closed by pett
can't reproduce
8:58 AM Ticket #14760 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:57 AM Ticket #14759 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:55 AM Ticket #14758 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
8:54 AM Ticket #14757 (Help Viewer: No module named 'pyqt') closed by pett
duplicate
7:02 AM Ticket #14763 (glClear: invalid value) created by rhenriques08@…
[…]
6:11 AM Ticket #14762 (Unknown crash) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #14761 (Crash opening mmCIF file) created by jan.binovsky@…
[…]

Mar 12, 2024:

11:59 PM Ticket #14760 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14759 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14758 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14757 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
11:59 PM Ticket #14756 (Help Viewer: No module named 'pyqt') created by chimerax-bug-report@…
[…]
8:46 PM Ticket #14755 (tug after session restore: openmm.OpenMMException: Particle coordinate ...) created by maja.divjak@…
[…]
7:41 PM Ticket #14754 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by hgbrown@…
[…]
5:41 PM Ticket #14753 (Crash in garbage collection) closed by pett
duplicate
5:40 PM Ticket #14752 (Crash in registration dialog) closed by pett
can't reproduce
5:23 PM Ticket #9942 (Implement ribbon worms) closed by pett
fixed: "Worms" tab in Render By Attribute tool as of tomorrow's build.
3:14 PM Ticket #14753 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:03 PM Ticket #14752 (Crash in registration dialog) created by chimerax-bug-report@…
[…]
12:29 PM ChangeLog edited by Elaine Meng
(diff)
11:21 AM Ticket #14751 (Crash handling text input) closed by pett
can't reproduce
11:20 AM Ticket #14750 (Bad/non-SDF file) closed by pett
not a bug
9:55 AM Ticket #14747 (sqm failure) closed by pett
can't reproduce: sqm was not rerun because "No convergence in SCF" was not in the …
9:40 AM Ticket #14746 (How "name" works) closed by pett
not a bug: Hi Oli, The basic form of the "name" command remembers the spec you …
9:29 AM Ticket #14745 (Crash in Open→File dialog) closed by pett
can't reproduce
8:55 AM Ticket #14751 (Crash handling text input) created by chimerax-bug-report@…
[…]
7:02 AM Ticket #14750 (Bad/non-SDF file) created by chimerax-bug-report@…
[…]
6:18 AM Ticket #14749 (Clipper: not compatible with ChimeraX 1.8) created by wolfram.seifert@…
[…]
4:02 AM Ticket #14748 (ISOLDE: There is no registered Platform called "OpenCL") created by chimerax-bug-report@…
[…]

Mar 11, 2024:

5:55 PM Ticket #14747 (sqm failure) created by chimerax-bug-report@…
[…]
4:45 PM Ticket #14746 (How "name" works) created by olibclarke@…
[…]
3:32 PM Ticket #14745 (Crash in Open→File dialog) created by chimerax-bug-report@…
[…]
11:52 AM Ticket #14744 (Crash in garbage collection) closed by pett
duplicate
11:37 AM Ticket #14741 (Crash in python_instances_of_class) closed by pett
can't reproduce: User was clicking a check button when this happened, but not much to …
11:23 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:21 AM Ticket #14738 (Crash in garbage collection) closed by pett
duplicate: Hi Jan, Thanks for reporting this problem. We believe it is fixed in …
11:16 AM Ticket #14737 (Dead model in session.selection) closed by pett
duplicate: Should be fixed by the same fix as #10047
11:11 AM Ticket #14736 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
11:07 AM Ticket #14735 (Crash in garbage collection) closed by pett
duplicate
11:04 AM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
10:46 AM Ticket #14744 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
10:36 AM Ticket #14730 (Crash using Open dialog) closed by pett
can't reproduce
9:19 AM Ticket #14743 (Unreliable Z translation in mouse mode) created by olibclarke@…
[…]
7:30 AM Ticket #14742 (Add Hydrogens: Singular matrix) created by petersx1@…
[…]
4:12 AM Ticket #14741 (Crash in python_instances_of_class) created by chimerax-bug-report@…
[…]
3:11 AM Ticket #14740 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
3:02 AM Ticket #14739 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:42 AM Ticket #14738 (Crash in garbage collection) created by jan.binovsky@…
[…]

Mar 9, 2024:

10:01 PM Ticket #14737 (Dead model in session.selection) created by chimerax-bug-report@…
[…]
9:10 PM Ticket #14736 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:42 PM Ticket #14735 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
12:56 PM Ticket #14734 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]

Mar 9, 2024:

3:14 AM Ticket #14733 (Session restore: blast protein: KeyError: '_protein_chain') created by chimerax-bug-report@…
[…]

Mar 8, 2024:

6:41 PM Ticket #14732 (volume command fastEncloseVolume does not give right level when ...) closed by Tom Goddard
fixed: Fixed. Made both fastEncloseVolume and encloseVolume set the surface …
6:30 PM Ticket #14732 (volume command fastEncloseVolume does not give right level when ...) created by goddard@…
[…]
6:10 PM ChangeLog edited by Elaine Meng
(diff)
4:39 PM Ticket #14731 (cannot load libXau) created by chimerax-bug-report@…
[…]
12:59 PM Ticket #14730 (Crash using Open dialog) created by chimerax-bug-report@…
[…]
12:46 PM Ticket #14721 (ISOLDE: error registering 'isolde' command) closed by Tom Goddard
nonchimerax: I agree it is a numpy bug. Looks like it was probably introduced into …
12:32 PM Ticket #14729 (map_series: model is None) created by chimerax-bug-report@…
[…]
12:14 PM Ticket #14728 (Cannot open cxc files from terminal with daily release) created by Mary.Clay@…
[…]
10:28 AM Ticket #14701 (Fix atomic_lib compiler warnings) closed by pett
fixed: Changed code and added compiler flags to eliminate the warnings.
8:52 AM Ticket #14727 (Crash in garbage collection) closed by pett
duplicate
8:48 AM Ticket #14726 (Crash running file-save dialog) closed by pett
can't reproduce
8:44 AM Ticket #14725 (BlastProtein: wrapped C/C++ object of type QProgressBar has been deleted) closed by pett
can't reproduce
7:14 AM Ticket #14727 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 7, 2024:

8:03 PM Ticket #14726 (Crash running file-save dialog) created by chimerax-bug-report@…
[…]
2:35 PM 2024-3-7 edited by Zach Pearson
(diff)
2:08 PM Ticket #14725 (BlastProtein: wrapped C/C++ object of type QProgressBar has been deleted) created by chimerax-bug-report@…
[…]
1:31 PM Ticket #14724 (Crash in event loop) closed by pett
can't reproduce
1:23 PM Ticket #14722 (Graphics kernel error) closed by pett
can't reproduce: Hi Alexander, Thanks for reporting this error. It is a problem in …
1:14 PM Ticket #14724 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:54 AM Ticket #14723 (Problem with MSF alignment file) created by sanjana.vasanth@…
[…]
12:34 AM Ticket #14722 (Graphics kernel error) created by arotsch@…
[…]

Mar 6, 2024:

5:17 PM Ticket #14721 (ISOLDE: error registering 'isolde' command) created by torquato@…
[…]
4:46 PM Ticket #14719 (Crash in garbage collection) closed by pett
duplicate
4:45 PM Ticket #14718 (Crash in QOpenGLContext::makeCurrent) closed by pett
can't reproduce: Hi Andrew, Thanks for reporting this problem. The crash was in the …
3:49 PM Ticket #14720 (ISOLDE: failure registering 'isolde' command) created by torquato@…
[…]
2:26 PM Ticket #14719 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #14718 (Crash in QOpenGLContext::makeCurrent) created by amacbride@…
[…]
1:23 PM Ticket #14717 (AlphaFold error plot does not suggest PAE file) closed by Tom Goddard
fixed: Fixed. The PAE error plot code was setting the structure menu and did …
1:12 PM Ticket #14717 (AlphaFold error plot does not suggest PAE file) created by goddard@…
[…]
12:01 PM Ticket #14716 (Crash in garbage collection) closed by pett
duplicate
12:00 PM Ticket #14715 (Crash in garbage collection) closed by pett
can't reproduce
11:28 AM Ticket #14716 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #14715 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
9:57 AM Ticket #14714 (Cannot write to configuration directory) created by chimerax-bug-report@…
[…]
9:49 AM Ticket #14709 (Dock Prep/AddH using dead AtomicStructureListWidget) closed by pett
can't reproduce: Don't see how the AddH tool could still be around yet it's …
9:28 AM Ticket #14712 (Crash in garbage collection) closed by pett
duplicate
9:24 AM Ticket #14710 (Qt platform plugin could not be initialized) closed by pett
duplicate: duplicate/predecessor to #14711
9:09 AM Ticket #14708 (Crash in event loop after AlphaFold prediction) closed by pett
can't reproduce
5:57 AM Ticket #14713 (DSSP output in ChimeraX) created by r.joosten@…
[…]
5:10 AM Ticket #14712 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Mar 5, 2024:

10:31 PM Ticket #14711 (Qt platform plugin could not be initialized) created by 1053094178@…
[…] [[Image(...)]]
10:21 PM Ticket #14710 (Qt platform plugin could not be initialized) created by 1053094178@…
[…]
4:47 PM Ticket #14709 (Dock Prep/AddH using dead AtomicStructureListWidget) created by chimerax-bug-report@…
[…]
3:34 PM Ticket #14708 (Crash in event loop after AlphaFold prediction) created by chimerax-bug-report@…
[…]
2:12 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) reopened by Tom Goddard
ChimeraX 1.7.1 on Intel Mac is supposed to work with macOS 10.14 …
1:54 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) closed by pett
not a bug: Hi Martin, The last version of ChimeraX that worked with MacOS 10.14 …
1:16 PM Ticket #14707 (ChimeraX 1.7.1 worked one time but will not start a second time) created by martin.horvath@…
[…] Mid-2014 Mac Mojave.png
12:16 PM Ticket #14704 (Picking code: Singular matrix) closed by Tom Goddard
can't reproduce: User was trying to select with the mouse and some model has a singular …
12:05 PM Ticket #14705 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:44 AM 2024-3-7 created by Tom Goddard
11:43 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:12 AM Ticket #14706 (Crash in garbage collection) closed by pett
duplicate
9:02 AM Ticket #14703 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
8:59 AM Ticket #14706 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
8:00 AM Ticket #14705 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
5:22 AM Ticket #14704 (Picking code: Singular matrix) created by chimerax-bug-report@…
[…]
2:45 AM Ticket #14703 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Mar 4, 2024:

5:29 PM Dev2024-3-4 edited by Tom Goddard
(diff)
5:27 PM Dev2024-3-4 edited by Tom Goddard
(diff)
5:03 PM Ticket #14702 (Atomic bundle cython code deprecation warning about "IF" statement) closed by pett
fixed: Fix: …
2:34 PM Ticket #14696 (Build Structure: adjust bond length: dead bond) closed by pett
fixed
12:00 PM Ticket #14702 (Atomic bundle cython code deprecation warning about "IF" statement) created by Tom Goddard
Our updated Cython is giving a deprecation warning about the IF …
11:57 AM Ticket #14701 (Fix atomic_lib compiler warnings) created by Tom Goddard
I get various compiler warning compiling atomic_lib on Mac ARM (XCode …
11:37 AM Ticket #14700 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:35 AM Ticket #14698 (Crash setting volume level) closed by Tom Goddard
can't reproduce: Could be out of memory. Machine only has 8 GB.
11:32 AM Ticket #14694 (Graphics crash, macOS 11.7.9, Intel Iris Plus Graphics 645) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:28 AM Ticket #14699 (Unknown crash) closed by pett
can't reproduce
11:24 AM Ticket #14697 (Crash handling text input) closed by pett
can't reproduce
11:19 AM Ticket #14695 (Unknown crash) closed by pett
can't reproduce: There's no current thread?!?
11:16 AM Ticket #14693 (Crash in garbage collection) closed by pett
duplicate
11:14 AM Ticket #14692 (python_instances_of_class: Structure object is None) closed by pett
duplicate
11:01 AM Ticket #14691 (Crash in garbage collection) closed by pett
duplicate
10:36 AM Ticket #14700 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
10:23 AM Ticket #14690 (Crash in garbage collection) closed by pett
duplicate: Hi Peter, Thanks for reporting this problem. We believe it is fixed …
10:19 AM Ticket #14689 (Crash in garbage collection) closed by pett
duplicate: Hi Tolga, Thanks for reporting this problem. We believed we have …
6:56 AM Ticket #14699 (Unknown crash) created by chimerax-bug-report@…
[…]

Mar 3, 2024:

11:50 PM Ticket #14698 (Crash setting volume level) created by chimerax-bug-report@…
[…]
7:31 PM Ticket #14697 (Crash handling text input) created by chimerax-bug-report@…
[…]
5:31 PM Ticket #14696 (Build Structure: adjust bond length: dead bond) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #14695 (Unknown crash) created by chimerax-bug-report@…
[…]

Mar 2, 2024:

5:36 AM Ticket #14694 (Graphics crash, macOS 11.7.9, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
[…]
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