![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Mar 25, 2021:
- 10:29 PM 2021-3-25 edited by
- (diff)
- 8:47 PM Ticket #4412 (segmentation color command: 'numpy.float64' object cannot be ...) closed by
- fixed: Fixed. User gave a floating-point value map as the segmentation …
- 8:22 PM Ticket #4420 (Want per-model silhouette edges) created by
- On Mar 25, 2021, at 10:09 PM, Andre LB Ambrosio wrote: Dear all, I …
- 7:02 PM Ticket #4419 (Add a command to make user defined color palettes) created by
- Begin forwarded message: From: Abhilash Padvannil Subject: …
- 6:18 PM Ticket #4408 (Color key: unsupported locale setting) closed by
- fixed
- 5:58 PM Ticket #4409 (Session restore clearing log impairs debugging) closed by
- fixed: Now the log is not cleared if the session restore is unsuccessful. …
- 5:29 PM Ticket #4410 (Color key: 'FontOption' object has no attribute '_callback') closed by
- fixed: Needed to prevent the initial creation of the option's menu from also …
- 5:17 PM Ticket #4411 (Build Structure tool issuing command with incorrect keyword) closed by
- fixed: Hi Tony, thanks for letting me know! Fixed now. --Eric
- 4:49 PM Ticket #3909 (Large structure 5y6p opens unexpectedly slowly, 27 seconds) closed by
- fixed: I have to say, this was a nightmare to track down. I thought …
- 3:23 PM NeteSOW edited by
- (diff)
- 2:08 PM NeteSOW edited by
- (diff)
- 2:07 PM NeteSOW edited by
- (diff)
- 1:38 PM NeteSOW edited by
- (diff)
- 1:19 PM NeteSOW edited by
- (diff)
- 1:05 PM NeteSOW edited by
- (diff)
- 9:29 AM Ticket #4418 (Shell sluggish) created by
- […]
- 9:06 AM Ticket #4417 (Bundle Builder findable OpenMM headers) created by
- […]
- 9:04 AM Ticket #4416 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Hi Yuhang, Thanks for reporting this problem. We believe this issue …
- 9:02 AM Ticket #4415 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate: Hi Saw, Thanks for reporting this problem. We believe this issue has …
- 9:00 AM Ticket #4414 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
- 8:53 AM Ticket #4416 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 8:51 AM Ticket #4415 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 8:50 AM Ticket #4414 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 8:36 AM Dev2021-3-18 edited by
- (diff)
- 5:32 AM Ticket #4413 (Make --force-reinstall the default when building from source) created by
- […]
- 3:22 AM Ticket #4412 (segmentation color command: 'numpy.float64' object cannot be ...) created by
- […]
Mar 24, 2021:
- 11:23 PM Ticket #4411 (Build Structure tool issuing command with incorrect keyword) created by
- […]
- 7:54 PM Ticket #4410 (Color key: 'FontOption' object has no attribute '_callback') created by
- […]
- 7:50 PM Ticket #4407 (Error restarting VR: openvr CompositorError_TextureUsesUnsupportedFormat) closed by
- fixed: Fixed. Each VR session restore was registering an extra new frame …
- 6:42 PM Ticket #4409 (Session restore clearing log impairs debugging) created by
- […]
- 6:29 PM Ticket #4408 (Color key: unsupported locale setting) created by
- […]
- 6:26 PM Ticket #4405 (self._positions is None) closed by
- fixed: This bug was fixed 6 months ago after the ChimeraX 1.1 release. It …
- 6:11 PM Ticket #4407 (Error restarting VR: openvr CompositorError_TextureUsesUnsupportedFormat) created by
- […]
- 6:05 PM Ticket #4406 (Restoring new session in older ChimeraX: _pickle.UnpicklingError: ...) created by
- […]
- 4:58 PM Ticket #4401 (Surface: cannot convert float NaN to integer) closed by
- can't reproduce: A molecular surfaces was being computed for a molecule with atom …
- 4:48 PM Ticket #4404 (Startup command line file arg hangs on Mac) closed by
- fixed: Fixed. It is scary to see event processing outside the normal event …
- 3:36 PM Ticket #4403 (Coulombic: KeyError: 'OXT') closed by
- fixed
- 3:35 PM Ticket #4402 (Toolshed using internal UI API) closed by
- duplicate: Hi Annylory, Thanks for reporting this problem. The updates …
- 3:10 PM Ticket #4405 (self._positions is None) created by
- […]
- 2:53 PM Ticket #4404 (Startup command line file arg hangs on Mac) created by
- Starting ChimeraX like so on a Mac hangs: …
- 1:40 PM Ticket #4403 (Coulombic: KeyError: 'OXT') created by
- […]
- 1:16 PM ChangeLog edited by
- (diff)
- 1:10 PM Ticket #4399 (Terminal FME/AME protonated incorrectly) closed by
- fixed: Fixed in tomorrow's build.
- 12:23 PM Ticket #4402 (Toolshed using internal UI API) created by
- […]
- 11:44 AM Ticket #4400 (Session trying to directly save alignment header) closed by
- can't reproduce: Unfortunately, using your session and then running through all the …
- 10:54 AM 2021-3-25 created by
- 10:52 AM DeveloperMeetings edited by
- (diff)
- 10:30 AM Ticket #4401 (Surface: cannot convert float NaN to integer) created by
- […]
- 8:05 AM Ticket #4398 (Crash removing dock widget from main window) closed by
- can't reproduce
- 7:52 AM Ticket #4400 (Session trying to directly save alignment header) created by
- […]
- 4:53 AM Ticket #4399 (Terminal FME/AME protonated incorrectly) created by
- […]
Mar 23, 2021:
- 6:30 PM Ticket #3556 (A problem starting chimerax on Centos7) closed by
- fixed: My apologies for not closing this sooner. Thank you for confirming …
- 6:27 PM Ticket #4292 (Problem restoring session: invalid load key) closed by
- duplicate: This appears to be the same bug as #4393. The session file was …
- 6:24 PM Ticket #4393 (Problem restoring session: invalid load key) closed by
- not a bug: Confirmed that it restores in the Windows daily build too. I believe …
- 5:36 PM Ticket #4395 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by
- worksforme: Without an email address, it is impossible to find out what really …
- 5:31 PM Ticket #3886 (HELIX/SHEET records need to support Hybrid-36 chain IDs) closed by
- fixed: Available in tomorrow's build.
- 2:59 PM Ticket #4398 (Crash removing dock widget from main window) created by
- […]
- 2:56 PM Ticket #4397 (Error in toolshed error message) closed by
- duplicate
- 2:54 PM Ticket #4396 (Setting temp file missing) closed by
- duplicate
- 9:03 AM Ticket #4397 (Error in toolshed error message) created by
- […]
- 8:40 AM Ticket #4396 (Setting temp file missing) created by
- […]
Mar 22, 2021:
- 5:47 PM Ticket #4171 (delete alt locs) closed by
- fixed: Implemented Atom.delete_alt_loc() which does very little consistency …
- 4:20 PM Ticket #4395 (libGLU.so.1: cannot open shared object file: No such file or directory) created by
- […]
- 4:03 PM Ticket #4391 (view matrix: 'tuple' object has no attribute 'matrix') closed by
- fixed: Fix available in next daily build
- 10:36 AM Ticket #4394 (Double free?) created by
- […]
- 9:46 AM Ticket #4392 (Toolshed using internal UI API) closed by
- duplicate
- 9:28 AM Ticket #4393 (Problem restoring session: invalid load key) created by
- […]
- 9:19 AM Ticket #4388 (Setting temp file missing) closed by
- fixed
- 8:19 AM Ticket #4392 (Toolshed using internal UI API) created by
- […]
- 6:09 AM Ticket #4391 (view matrix: 'tuple' object has no attribute 'matrix') created by
- […]
- 3:56 AM Ticket #4390 (ISOLDE: update selected residue info: wrapped C/C++ object of type ...) created by
- […]
Mar 20, 2021:
- 7:20 PM Ticket #4380 (Query about system-wide ISOLDE installation) reopened by
- For users, if you install the bundles before they first run ChimeraX, …
- 6:42 PM Ticket #4380 (Query about system-wide ISOLDE installation) closed by
- not a bug: On Linux and macOS, if you make the ChimeraX application files owned …
- 10:51 AM Ticket #4389 (Double free?) created by
- […]
Mar 19, 2021:
- 1:59 PM Ticket #4388 (Setting temp file missing) created by
- […]
- 9:09 AM Ticket #4387 (Make dssp info programmatically available) created by
- I'm looking for the sheets, the strands in the sheets, the residues in …
- 9:04 AM Ticket #4386 (Transparent JPEG error) closed by
- duplicate
- 8:57 AM Ticket #4384 (Unknown crash) closed by
- can't reproduce: Can't say the stack trace is a big help on this one.
Mar 18, 2021:
- 11:58 PM Ticket #4386 (Transparent JPEG error) created by
- […]
- 6:15 PM Ticket #4385 (Unit Cell gui does not start TypeError: object of type 'int' has no len()) closed by
- fixed: Fixed. Change to crystal module to return empty Places() instance …
- 6:08 PM Ticket #4385 (Unit Cell gui does not start TypeError: object of type 'int' has no len()) created by
- […]
- 5:44 PM Dev2021-3-18 edited by
- (diff)
- 5:42 PM Dev2021-3-18 edited by
- (diff)
- 5:33 PM 2021-3-18 edited by
- (diff)
- 5:33 PM 2021-3-18 edited by
- (diff)
- 5:31 PM 2021-3-18 edited by
- (diff)
- 5:30 PM 2021-3-18 edited by
- (diff)
- 4:51 PM Ticket #4366 (ChimeraX image of developer team) closed by
- fixed: Okay, we have done away with the splash screen entirely and moved the …
- 4:10 PM Ticket #4384 (Unknown crash) created by
- […]
- 4:03 PM Ticket #4382 (Graphics crash, macOS 11.2.3, Radeon Pro 580 external gpu, report 1) closed by
- nonchimerax: It is sad how common these Apple graphics driver crashes are. It is …
- 10:58 AM 2021-3-18 edited by
- (diff)
- 9:54 AM Ticket #4383 (Toolshed error in "already installed" error message) closed by
- duplicate: Hi Long, Thanks for reporting this problem. StringDB is already …
- 9:49 AM Ticket #4383 (Toolshed error in "already installed" error message) created by
- […]
- 9:31 AM Ticket #4381 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') closed by
- duplicate
- 8:17 AM Ticket #4382 (Graphics crash, macOS 11.2.3, Radeon Pro 580 external gpu, report 1) created by
- […]
- 3:45 AM Ticket #4381 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') created by
- […]
- 2:56 AM Ticket #4380 (Query about system-wide ISOLDE installation) created by
- Query from Andrew Rabagliati at the University of Cape Town: Tristan, …
Mar 17, 2021:
- 6:40 PM Ticket #4379 (Measurements of ChimeraX startup-time) created by
- […]
- 4:05 PM Ticket #4378 (Color key showing too many digits in numeric labels) closed by
- fixed: Okay, show_key() defaults to 3 digits of precision, but will show less …
- 3:36 PM Dev2021-3-18 created by
- 3:33 PM 2021-3-18 created by
- 3:31 PM DeveloperMeetings edited by
- (diff)
- 3:25 PM Ticket #4362 (Segger: thrD is None) closed by
- fixed: Fixed. Made Segger give a warning saying map must have a surface …
- 12:05 PM ChangeLog edited by
- (diff)
- 11:01 AM Ticket #4378 (Color key showing too many digits in numeric labels) created by
- […] colorkey.png
- 10:30 AM Ticket #4373 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) closed by
- nonchimerax
- 10:27 AM Ticket #4371 (Graphics crash, macOS 10.15.3, Geforce GTX 580M) closed by
- nonchimerax: ChimeraX was using 30 Gb. As usual Apple graphics driver crashes when …
- 10:01 AM Ticket #4377 (Coulombic failure due to unexpected hydrogen name) closed by
- duplicate
- 9:57 AM Ticket #4376 (Toolshed using internal UI API) closed by
- duplicate
- 9:54 AM Ticket #4375 (Crash adding hydrogens) closed by
- duplicate: Fixed with AddH 2.1.3
- 9:45 AM Ticket #4374 (Qt crash at exit) closed by
- can't reproduce: Did not happen for me when I tried the same thing.
- 9:19 AM Ticket #4372 (Some chains in sticks) closed by
- not a bug: Those chains are short enough compared to the protein that they are …
- 9:11 AM Ticket #4369 (Toolshed using internal UI API) closed by
- duplicate: Hi Adonis, Thanks for reporting this problem. This error actually …
- 8:50 AM Ticket #4377 (Coulombic failure due to unexpected hydrogen name) created by
- […]
- 8:44 AM Ticket #4376 (Toolshed using internal UI API) created by
- […]
- 7:16 AM Ticket #4375 (Crash adding hydrogens) created by
- […]
Mar 16, 2021:
- 7:51 PM Ticket #4374 (Qt crash at exit) created by
- […]
- 5:57 PM Ticket #4373 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) created by
- […]
- 4:30 PM ChangeLog edited by
- (diff)
- 3:52 PM Ticket #4372 (Some chains in sticks) created by
- […] 1de9_refine_2.pdb
- 2:42 PM Ticket #4358 (mmCIF selectedOnly very slow) closed by
- fixed: Put the other speed changes in. Please evaluate the improvements. It …
- 2:39 PM Ticket #3372 (Writing mmCIF file takes 35 minutes) closed by
- fixed: Implemented scanning for non-standard inter-residue bonds in C++ so …
- 2:17 PM Ticket #4371 (Graphics crash, macOS 10.15.3, Geforce GTX 580M) created by
- […]
- 2:01 PM Ticket #4370 (coordset slider increment) created by
- The up/down buttons on the coordset slider increment by one, even when …
- 1:57 PM Ticket #4369 (Toolshed using internal UI API) created by
- […]
- 10:08 AM Ticket #4368 (Blast results problem) closed by
- duplicate: Hi Tiglath, As Elaine mentioned on the chimera-users list, this …
Mar 15, 2021:
- 11:07 PM Ticket #4368 (Blast results problem) created by
- […] A0A2Y9KAE0.fasta
- 6:58 PM Ticket #4365 (Graphics crash, macOS 11.1, Intel Iris Plus, report 5) closed by
- nonchimerax: Apple opengl driver crash.
- 6:57 PM Ticket #4363 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Appears that glDrawBuffer(GL_NONE) returns a GL_INVALID_OPERATION when …
- 11:59 AM Ticket #4367 (Startup message "Could not find virtual screen for QCocoaScreen") created by
- […]
- 10:27 AM Ticket #4366 (ChimeraX image of developer team) created by
- […]
Mar 13, 2021:
- 6:57 PM Ticket #4365 (Graphics crash, macOS 11.1, Intel Iris Plus, report 5) created by
- […]
- 10:16 AM Ticket #4364 (CA-only ribbon showing missing-structure backbone pseudobonds) created by
- […]
Mar 13, 2021:
Mar 12, 2021:
- 3:53 PM Ticket #4362 (Segger: thrD is None) created by
- […]
- 12:29 PM NeteSOW edited by
- (diff)
- 12:23 PM Ticket #4359 (Surface caps: Array argument has non-numeric values) closed by
- duplicate: Fixed a year and a half ago. #2279 Would be nice improvement to bug …
- 12:20 PM Ticket #4357 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 1) closed by
- nonchimerax: Apple graphics driver crash. Ticket #4350 discusses idea for limiting …
- 11:51 AM NeteSOW edited by
- (diff)
- 11:23 AM NeteSOW edited by
- (diff)
- 9:29 AM Ticket #4361 (Crash in new_bond during AddH) closed by
- can't reproduce: Though fascinating, the stack trace alone isn't really of much help in …
- 9:26 AM Ticket #4360 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) closed by
- duplicate
Mar 11, 2021:
- 11:44 PM Ticket #4361 (Crash in new_bond during AddH) created by
- […]
- 6:59 PM Ticket #4360 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
- 1:39 PM 2021-3-11 edited by
- (diff)
- 1:39 PM 2021-3-11 edited by
- (diff)
- 1:36 PM 2021-3-11 edited by
- (diff)
- 1:35 PM 2021-3-11 edited by
- (diff)
- 1:34 PM 2021-3-11 edited by
- (diff)
- 1:32 PM 2021-3-11 edited by
- (diff)
- 12:28 PM Dev2021-3-4 edited by
- (diff)
- 8:37 AM Ticket #4356 (Disk quota exceeded saving command history) closed by
- nonchimerax: We're probably not yet to the point that we want to do something …
- 8:33 AM Ticket #4355 (defattr via 'open') closed by
- not a bug: Hi JD! You aren't doing anything wrong per se, but the ability to …
- 7:36 AM Ticket #4359 (Surface caps: Array argument has non-numeric values) created by
- […]
- 3:34 AM Ticket #4358 (mmCIF selectedOnly very slow) created by
- […]
- 3:02 AM Ticket #4357 (Graphics crash, macOS 10.15.7, Radeon Pro 580X, report 1) created by
- […]
- 2:00 AM Ticket #4356 (Disk quota exceeded saving command history) created by
- […]
- 1:17 AM Ticket #4355 (defattr via 'open') created by
- […]
Mar 10, 2021:
- 6:09 PM 2021-3-11 edited by
- (diff)
- 6:06 PM 2021-3-11 edited by
- (diff)
- 6:06 PM 2021-3-11 edited by
- (diff)
- 6:05 PM 2021-3-11 edited by
- (diff)
- 6:05 PM 2021-3-11 edited by
- (diff)
- 6:04 PM 2021-3-11 edited by
- (diff)
- 6:04 PM ChangeLog edited by
- (diff)
- 2:30 PM 2021-3-11 created by
- 2:29 PM DeveloperMeetings edited by
- (diff)
- 2:28 PM Ticket #4339 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) closed by
- nonchimerax: Did some testing of macOS OpenGL driver crashes using large surfaces …
- 11:56 AM Ticket #4346 (3D labels: could not broadcast input array from shape) closed by
- fixed: Duplicate. Fixed in daily build many months ago. User tried to show …
- 11:27 AM Ticket #4348 (conference uses notoriously insecure pickle) closed by
- fixed: Git removed conference. It is not used, never worked, superceded by …
- 10:03 AM Ticket #4347 (blastprotein uses notoriously insecure pickle in session data) closed by
- fixed: Okay. Done.
- 9:59 AM Ticket #4354 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') closed by
- fixed: Known bug, fixed in my local version. I guess it's time I put out …
- 9:42 AM Ticket #4353 (Modeller job fault / server error) closed by
- duplicate: Hi Demian, Thanks for reporting this problem. The Modeller web …
- 4:59 AM Ticket #4354 (ISOLDE: merge_fragment() got an unexpected keyword argument 'update_style') created by
- […]
- 4:41 AM Ticket #4353 (Modeller job fault / server error) created by
- […]
Mar 9, 2021:
- 8:06 PM Ticket #4352 (Mac Intel graphics driver crash with 300 million triangle surface) closed by
- nonchimerax
- 8:00 PM Ticket #4351 (OpenGL out of memory, four large surfaces, macOS, Intel graphics) closed by
- nonchimerax
- 7:59 PM Ticket #4352 (Mac Intel graphics driver crash with 300 million triangle surface) created by
- […]
- 7:53 PM Ticket #4351 (OpenGL out of memory, four large surfaces, macOS, Intel graphics) created by
- […]
- 7:12 PM Ticket #4350 (Apple graphics driver crash, large surface) created by
- […]
- 6:58 PM Ticket #4336 (Listing desktop to save image: Operation not permitted) closed by
- duplicate: Already have a user friendly error message being generated. This …
- 6:33 PM Ticket #4349 (Startup error not reported) created by
- […]
- 5:48 PM ChangeLog edited by
- (diff)
- 5:45 PM ChangeLog edited by
- (diff)
- 5:24 PM Ticket #4348 (conference uses notoriously insecure pickle) created by
- pickle create objects directly during deserialization and is known to …
- 5:20 PM Ticket #4347 (blastprotein uses notoriously insecure pickle in session data) created by
- Sessions should only contain primitive data. pickle create objects …
- 4:38 PM Ticket #4346 (3D labels: could not broadcast input array from shape) created by
- […]
- 4:34 PM Ticket #3983 (Update Tool: No matching distribution found for ChimeraX-RMF==0.9) closed by
- fixed: Bundle wheel names, which encode the versions of Python and which …
- 4:06 PM Ticket #4345 (Markers placed in wrong position on map if marker set moved) closed by
- fixed: Fixed. The marker placement mouse modes were not correctly handling …
- 3:33 PM Ticket #4345 (Markers placed in wrong position on map if marker set moved) created by
- […]
- 12:46 PM Ticket #4344 (Window-size preference not honored) closed by
- fixed: During the switch from PyQt5 to PySide2, T.G. added a short-circuiting …
- 12:13 PM Ticket #4344 (Window-size preference not honored) created by
- […]
- 11:41 AM Ticket #4335 (Opening PDB via rest remotecontrol reports mystery error in JSON output) closed by
- fixed: The JSON part of the 'open' code hadn't been revised to account for …
- 11:17 AM Ticket #4340 (Matchmaker: 'NoneType' object has no attribute 'atomspec') closed by
- fixed: No structures with chains were open. Added more error checking.
- 9:35 AM Ticket #4343 (PDB writing: issue error/warning for long chain IDs) created by
- […]
- 9:31 AM Ticket #4342 (mmCIF format-compliance issues) created by
- […] 6xra_rebuilt_glycan_chains_reassigned.cif
- 8:31 AM Ticket #4341 (Confusion with 'OK') closed by
- not a bug: Hi Luca, That's basically how 'OK' works: it's Apply + close window. …
- 8:21 AM Ticket #4337 (Toolshed using internal UI API) closed by
- duplicate
- 4:13 AM Ticket #4341 (Confusion with 'OK') created by
- […]
- 12:13 AM Ticket #4340 (Matchmaker: 'NoneType' object has no attribute 'atomspec') created by
- […]
Mar 8, 2021:
- 4:54 PM Ticket #4339 (Graphics crash, macOS 10.15.7, Intel Iris Plus 645) created by
- […]
- 3:34 PM Ticket #4338 (crystalcontacts traceback on 1g74 schematic) closed by
- fixed: Fixed. Crystal symmetries changed the identity symmetry to have small …
- 2:33 PM Ticket #4338 (crystalcontacts traceback on 1g74 schematic) created by
- […]
- 1:33 PM Ticket #4337 (Toolshed using internal UI API) created by
- […]
- 1:24 PM Ticket #4336 (Listing desktop to save image: Operation not permitted) created by
- […]
- 1:09 PM ChangeLog edited by
- (diff)
- 11:27 AM Ticket #4333 (Toolshed install: AttributeError: 'str' object has no attribute 'name') closed by
- duplicate
- 11:26 AM Ticket #4332 (Toolshed using internal UI API) closed by
- duplicate
- 10:51 AM Ticket #4330 (mmCIF _struct_sheet output not accepted by REFMAC) closed by
- nonchimerax: My bad. Looks like this is not a ChimeraX problem after all (the mmCIF …
- 10:38 AM Ticket #4334 (Windows crash in show_open_file_dialog()) closed by
- nonchimerax: User appears to be using Chinese language Windows 10 (Build 18363), Qt …
- 10:32 AM Ticket #4331 (OSError: Unable to open file '...model10_from_Chimera.pdb' for writing) closed by
- not a bug: User error.
- 10:08 AM Ticket #4335 (Opening PDB via rest remotecontrol reports mystery error in JSON output) created by
- […]
- 3:48 AM Ticket #4334 (Windows crash in show_open_file_dialog()) created by
- […]
Mar 6, 2021:
- 9:46 PM Ticket #4333 (Toolshed install: AttributeError: 'str' object has no attribute 'name') created by
- […]
- 9:45 PM Ticket #4332 (Toolshed using internal UI API) created by
- […]
- 11:52 AM Ticket #4331 (OSError: Unable to open file '...model10_from_Chimera.pdb' for writing) created by
- […]
Mar 5, 2021:
- 9:25 PM Ticket #4231 (Colorbrewer palettes not using correct default number of colors) closed by
- fixed: The fix for #4208 appears to fix this too. {{{key pastel1 :12 : :24 : …
- 9:17 PM Ticket #4208 (Color arg no longer handled correctly) closed by
- fixed: Fixed by reverting Tom's optimization to not use sorted dictionaries. …
- 1:09 PM Ticket #4330 (mmCIF _struct_sheet output not accepted by REFMAC) created by
- […]
- 12:13 PM Ticket #4325 (Problems with MMTF bondAtomList) closed by
- fixed: I've updated ChimeraX to use the latest mmtf-cpp source code and made …
- 10:22 AM Ticket #4329 (Crash with trashed stack) created by
- […]
- 9:20 AM Ticket #4327 (Crash during some kind of mouse event) closed by
- can't reproduce
Mar 4, 2021:
- 6:05 PM ChangeLog edited by
- (diff)
- 4:32 PM 2021-3-4 edited by
- (diff)
- 4:30 PM 2021-3-4 edited by
- (diff)
- 4:29 PM 2021-3-4 edited by
- (diff)
- 3:19 PM Dev2021-3-4 edited by
- (diff)
- 3:17 PM Dev2021-3-4 edited by
- (diff)
- 3:12 PM Dev2021-3-4 edited by
- (diff)
- 2:01 PM Ticket #4328 (ISOLDE: 'OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by
- […]
- 1:02 PM Dev2021-3-4 edited by
- (diff)
- 12:38 PM Ticket #4327 (Crash during some kind of mouse event) created by
- […]
- 11:35 AM Ticket #4279 (Session restore: invalid load key) closed by
- duplicate: Probably same bug as #4393.
- 11:18 AM Ticket #4326 (Crash during garbage collection) created by
- […]
- 11:00 AM Ticket #4325 (Problems with MMTF bondAtomList) created by
- […] sal.mmtf
- 10:57 AM Ticket #4321 (Crash importing core.fetch) closed by
- can't reproduce: Well, maybe, but those other garbage collection crashes "felt" like …
- 10:17 AM Ticket #4324 (Crash initializing OpenGL (dual display)) closed by
- can't reproduce
- 10:02 AM Ticket #4324 (Crash initializing OpenGL (dual display)) created by
- […]
- 9:40 AM Ticket #4323 (AddH crash) closed by
- duplicate: Fixed in AddH 2.1.3, available on the toolshed.
- 8:19 AM Ticket #4323 (AddH crash) created by
- […]
- 7:14 AM Ticket #4322 (Matchmaker change matrix: wrapped C/C++ object of type QPushButton has ...) created by
- […]
Mar 3, 2021:
- 9:15 PM Ticket #4321 (Crash importing core.fetch) created by
- […]
- 3:47 PM Ticket #4320 (Rainbow structures makes surface transparent black) closed by
- fixed: Fixed. Surfaces were being colored with 0-1 float rgba instead of …
- 3:42 PM Ticket #4320 (Rainbow structures makes surface transparent black) created by
- […]
- 2:04 PM Ticket #4319 (Out of memory rendering volume texture) closed by
- duplicate: Duplicate of #4316
- 2:01 PM Ticket #4318 (Toolshed using internal UI API) closed by
- duplicate: Hi Sofea, Thanks for reporting this error. The packages you were …
- 1:43 PM Ticket #4317 (Problem saving PNG image) closed by
- not a bug: Hi Pooja, The format name is now 'png' rather than 'PNG'. Also, if …
- 11:55 AM Ticket #4319 (Out of memory rendering volume texture) created by
- […]
- 10:48 AM Ticket #4318 (Toolshed using internal UI API) created by
- […]
- 10:23 AM Ticket #4316 (Out of memory rendering volume texture) closed by
- nonchimerax: Graphics reports out of memory trying to allocate an OpenGL 3D texture …
- 10:11 AM Ticket #4314 (Permission denied trying to generate crash report) closed by
- nonchimerax: Same user reported this error before #2960 #2959 For unknown reasons …
- 9:41 AM Ticket #4317 (Problem saving PNG image) created by
- […]
- 9:24 AM Ticket #4315 (Coulombic failure due to unexpected hydrogen name) closed by
- not a bug: Hi Gus, In order for coulombic to add hydrogens and assign accurate …
- 8:23 AM Ticket #4313 (Crash in garbage collection during new-object allocation) closed by
- can't reproduce
- 7:49 AM Ticket #4316 (Out of memory rendering volume texture) created by
- […]
- 7:17 AM Ticket #4315 (Coulombic failure due to unexpected hydrogen name) created by
- […]
- 4:43 AM Ticket #4314 (Permission denied trying to generate crash report) created by
- […]
- 3:56 AM Ticket #4313 (Crash in garbage collection during new-object allocation) created by
- […]
Mar 2, 2021:
- 3:10 PM Ticket #4311 (creating molmap after starting Measure Volume and Area causes traceback) closed by
- fixed: Fixed. Measure volume and area raised an error for surfaces that have …
- 3:02 PM Ticket #4310 (showing Hide Dust tool (or others) with hidden map model gives traceback) closed by
- fixed: Fixed. I made an improvement to ModelMenu yesterday for the Measure …
- 1:18 PM Ticket #4312 (Toolshed error in "already installed" error message) closed by
- duplicate: Hi Cody, Thanks for reporting this problem. Looking at your log, it …
- 1:10 PM Ticket #4312 (Toolshed error in "already installed" error message) created by
- […]
- 12:40 PM Ticket #4311 (creating molmap after starting Measure Volume and Area causes traceback) created by
- […]
- 12:28 PM Ticket #4310 (showing Hide Dust tool (or others) with hidden map model gives traceback) created by
- […]
- 12:07 PM Ticket #4309 (ISOLDE: backrub failure) created by
- […]
- 10:40 AM 2021-3-4 edited by
- (diff)
- 10:40 AM 2021-3-4 created by
- 10:38 AM DeveloperMeetings edited by
- (diff)
- 9:31 AM Ticket #4308 (QtWebEngine crash) closed by
- can't reproduce: Thanks for responding. I assume that "color helix yellow" doesn't …
- 6:50 AM Ticket #4308 (QtWebEngine crash) created by
- […]
Mar 1, 2021:
- 6:17 PM Ticket #4307 (Volume viewer style change from mesh to plane logs invalid command) closed by
- fixed: Fixed. Logging command incorrectly handled mesh shown to not shown.
- 6:11 PM Ticket #4307 (Volume viewer style change from mesh to plane logs invalid command) created by
- […]
- 4:27 PM Ticket #4306 (Add graphical user interfaces for volumes, surfaces, higher-order structure) created by
- There are many Chimera graphical user interfaces that should probably …
- 3:21 PM Ticket #4305 (ISOLDE residue validation: cannot unpack non-iterable ...) created by
- […]
- 2:52 PM Ticket #4304 (Error in toolshed error message) closed by
- duplicate: Hi Sarah, You have the Molecular Dynamics Viewer successfully …
- 2:44 PM Ticket #4304 (Error in toolshed error message) created by
- […]
- 2:16 PM Ticket #4298 (Graphics crash, macOS 11.3, Intel Iris 550) closed by
- can't reproduce: Apple graphics driver bug.
- 2:08 PM Ticket #4302 (Color key: unsupported locale setting) closed by
- fixed: If US locale unavailable, cross our fingers and use the local one
- 1:38 PM Ticket #4303 (Coulombic failure due to unexpected hydrogen name) closed by
- duplicate: Hi James, The implicit hydrogen addition to the structure is …
- 1:25 PM Ticket #4301 (coulombic failure due to unexpected hydrogen name) closed by
- duplicate: Hi Ido, The Coulombic included in ChimeraX 1.1 requires that hydrogen …
- 12:02 PM Ticket #4299 (Crash: Calling windowShouldClose: on the delegate for the QNSPanel) closed by
- can't reproduce
- 1:42 AM Ticket #4303 (Coulombic failure due to unexpected hydrogen name) created by
- […]
Feb 28, 2021:
- 9:45 PM Ticket #4302 (Color key: unsupported locale setting) created by
- […]
- 8:02 AM Ticket #4301 (coulombic failure due to unexpected hydrogen name) created by
- […]
Feb 26, 2021:
- 11:37 PM Ticket #4297 ((pseudo)bonds in X3D output do not connect to ribbon) closed by
- fixed: Was able to reproduce this with 1gcn, a helix, and the command "hbond …
- 8:28 PM Ticket #4300 (multiple possible sequence matches) created by
- […] DNA.pdb
- 4:07 PM Ticket #4299 (Crash: Calling windowShouldClose: on the delegate for the QNSPanel) created by
- […]
- 1:54 PM ChangeLog edited by
- (diff)
- 11:35 AM Ticket #4298 (Graphics crash, macOS 11.3, Intel Iris 550) created by
- […]
- 11:17 AM Ticket #4297 ((pseudo)bonds in X3D output do not connect to ribbon) created by
- […] strut_x3d_bug.cxs
- 8:47 AM Ticket #4295 (AddH crash) closed by
- duplicate: Hi Gus, Thanks for reporting this problem. It is fixed in the 2.1.3 …
- 8:43 AM Ticket #4294 (Addh crash) closed by
- duplicate: Fixed with AddH 2.1.3
- 8:35 AM Ticket #4296 (Maestro pose viewer file: KeyError: 'i_m_residue_number') created by
- […]
- 5:34 AM Ticket #4295 (AddH crash) created by
- […]
- 5:32 AM Ticket #4294 (Addh crash) created by
- […]
Feb 25, 2021:
- 7:42 PM Ticket #4293 (Asks for Desktop access at first startup on macOS even though Desktop ...) closed by
- nonchimerax: I think asking for Desktop permission when it isn't actually needed …
- 6:56 PM Ticket #4293 (Asks for Desktop access at first startup on macOS even though Desktop ...) created by
- […]
- 3:09 PM Dev2021-3-4 edited by
- (diff)
- 3:02 PM 2021-2-25 edited by
- (diff)
- 2:55 PM NeteSOW edited by
- (diff)
- 2:30 PM NeteSOW edited by
- (diff)
- 1:27 PM NeteSOW edited by
- (diff)
- 1:34 AM Ticket #4292 (Problem restoring session: invalid load key) created by
- […]
Feb 24, 2021:
- 8:25 PM Ticket #4290 (Various session save/restore errors) closed by
- duplicate: First error is session not restoring caused by a bad session file …
- 6:09 PM ChangeLog edited by
- (diff)
- 8:47 AM Ticket #4291 (AddH crash) closed by
- duplicate: Fixed in AddH 2.1.3, available off the toolshed.
- 8:38 AM Ticket #4289 (Dual display crash) closed by
- duplicate: Qt 5.12
- 7:32 AM Ticket #4291 (AddH crash) created by
- […] …
- 7:24 AM Ticket #4290 (Various session save/restore errors) created by
- […]
Feb 23, 2021:
- 4:13 PM Ticket #4289 (Dual display crash) created by
- […]
- 3:57 PM 2021-2-25 created by
- 3:51 PM DeveloperMeetings edited by
- (diff)
- 2:27 PM Ticket #4288 (ISOLDE tugging: unsupported operand type(s) for -: 'NoneType' and ...) closed by
- fixed
- 10:57 AM Ticket #4287 (Graphics crash, macOS 10.15.7, Radeon Pro 580X) closed by
- nonchimerax: The Apple graphics driver crashed, from the crash dump "Graphics …
- 9:46 AM Ticket #4288 (ISOLDE tugging: unsupported operand type(s) for -: 'NoneType' and ...) created by
- […]
- 9:35 AM Ticket #4285 (Dual display crash) closed by
- duplicate: Qt 5.12
- 9:22 AM Ticket #4287 (Graphics crash, macOS 10.15.7, Radeon Pro 580X) created by
- […]
- 1:53 AM Ticket #4286 (Problem saving clashes settings) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
